Search of human proteins with 89030918

Search of human proteins with 89030918

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89030918 PREDICTED: similar to hCG1988827 [Homo sapiens]
         (92 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169194736 PREDICTED: similar to hCG1988827 [Homo sapiens]          189   4e-49
gi|89030918 PREDICTED: similar to hCG1988827 [Homo sapiens]           189   4e-49
gi|169194717 PREDICTED: similar to Na+/H+ exchanger domain conta...    87   4e-18
gi|154937338 Na+/H+ exchanger domain containing 1 isoform 2 [Hom...    86   5e-18
gi|66793392 Na+/H+ exchanger domain containing 1 isoform 1 [Homo...    86   5e-18
gi|47271479 Na+/H+ exchanger domain containing 2 [Homo sapiens]        69   6e-13
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]                     32   0.14 
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]                     32   0.14 
gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartat...    29   0.72 
gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens]              29   0.72 
gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens]             29   0.72 
gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding p...    27   2.7  
gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens]    26   6.1  
gi|166063983 interleukin 17 receptor D [Homo sapiens]                  26   6.1  
gi|23200041 tumor necrosis factor receptor superfamily, member 1...    26   7.9  
gi|60498982 amine oxidase, copper containing 2 isoform a [Homo s...    26   7.9  
gi|60498984 amine oxidase, copper containing 2 isoform b [Homo s...    26   7.9  

>gi|169194736 PREDICTED: similar to hCG1988827 [Homo sapiens]
          Length = 92

 Score =  189 bits (480), Expect = 4e-49
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTP 60
          MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTP
Sbjct: 1  MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTP 60

Query: 61 LGTICEGCDDSSIFSHLDHSSKWSSTYGHSGA 92
          LGTICEGCDDSSIFSHLDHSSKWSSTYGHSGA
Sbjct: 61 LGTICEGCDDSSIFSHLDHSSKWSSTYGHSGA 92


>gi|89030918 PREDICTED: similar to hCG1988827 [Homo sapiens]
          Length = 92

 Score =  189 bits (480), Expect = 4e-49
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTP 60
          MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTP
Sbjct: 1  MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTP 60

Query: 61 LGTICEGCDDSSIFSHLDHSSKWSSTYGHSGA 92
          LGTICEGCDDSSIFSHLDHSSKWSSTYGHSGA
Sbjct: 61 LGTICEGCDDSSIFSHLDHSSKWSSTYGHSGA 92


>gi|169194717 PREDICTED: similar to Na+/H+ exchanger domain
           containing 1 [Homo sapiens]
          Length = 271

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 43/44 (97%), Positives = 43/44 (97%)

Query: 1   MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSG 44
           MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVF SG
Sbjct: 155 MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFFSG 198


>gi|154937338 Na+/H+ exchanger domain containing 1 isoform 2 [Homo
           sapiens]
          Length = 475

 Score = 86.3 bits (212), Expect = 5e-18
 Identities = 43/44 (97%), Positives = 43/44 (97%)

Query: 1   MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSG 44
           MVLQENGYGVEE IPTLLMAASSMDDILAITGFNTCLSIVFSSG
Sbjct: 234 MVLQENGYGVEEGIPTLLMAASSMDDILAITGFNTCLSIVFSSG 277


>gi|66793392 Na+/H+ exchanger domain containing 1 isoform 1 [Homo
           sapiens]
          Length = 515

 Score = 86.3 bits (212), Expect = 5e-18
 Identities = 43/44 (97%), Positives = 43/44 (97%)

Query: 1   MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSG 44
           MVLQENGYGVEE IPTLLMAASSMDDILAITGFNTCLSIVFSSG
Sbjct: 234 MVLQENGYGVEEGIPTLLMAASSMDDILAITGFNTCLSIVFSSG 277


>gi|47271479 Na+/H+ exchanger domain containing 2 [Homo sapiens]
          Length = 537

 Score = 69.3 bits (168), Expect = 6e-13
 Identities = 32/44 (72%), Positives = 37/44 (84%)

Query: 1   MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSG 44
           ++LQ  GYGVE+ +PTLLMAA S DDILAITGFNTCL I FS+G
Sbjct: 254 LLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIAFSTG 297


>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
          Length = 1096

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 15  PTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTPLGTICEGCDDSS 72
           P+++    + +++     FN  L +V   G   +SGSRN++SL   +  +C+  D  S
Sbjct: 812 PSIIAVTLACEELKKSESFNRLLELVLLVGNYMNSGSRNAQSLGFKINFLCKIRDTKS 869


>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
          Length = 1101

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 15  PTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTPLGTICEGCDDSS 72
           P+++    + +++     FN  L +V   G   +SGSRN++SL   +  +C+  D  S
Sbjct: 812 PSIIAVTLACEELKKSESFNRLLELVLLVGNYMNSGSRNAQSLGFKINFLCKIRDTKS 869


>gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartate
           3A [Homo sapiens]
          Length = 1115

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 10  VEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRT---PLGTICE 66
           ++   PT++M    M+ I  I    T   ++          S+N + LRT   PLG I  
Sbjct: 318 IKNSTPTVVMFGCDMESIRRIFEITTQFGVMPPELRWVLGDSQNVEELRTEGLPLGLIAH 377

Query: 67  GCDDSSIFSH 76
           G    S+F H
Sbjct: 378 GKTTQSVFEH 387


>gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens]
          Length = 849

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 15  PTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTPLGTICEGCDDSS 72
           P ++  +++ ++I     F+  L +V   G   ++GSRN+++    L ++C+  D  S
Sbjct: 555 PDIMAVSTACEEIKKSKSFSKLLELVLLMGNYMNAGSRNAQTFGFNLSSLCKLKDTKS 612


>gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens]
          Length = 1193

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 15  PTLLMAASSMDDILAITGFNTCLSIVFSSGCARSSGSRNSKSLRTPLGTICEGCDDSS 72
           P ++  +++ ++I     F+  L +V   G   ++GSRN+++    L ++C+  D  S
Sbjct: 818 PDIMAVSTACEEIKKSKSFSKLLELVLLMGNYMNAGSRNAQTFGFNLSSLCKLKDTKS 875


>gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding
          protein-like protein [Homo sapiens]
          Length = 411

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 50 GSRNSKSLRTPLGTICEGCDDSSIFSHLDHSSKWSSTYG 88
          GS NS   R P G+   GC     FS L+ S++  S++G
Sbjct: 2  GSGNSGRARRPRGSSECGCQRQPPFSALEDSNRVGSSWG 40


>gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens]
          Length = 856

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 25  DDILAITGFN-TCLSIVF---SSGCARSSGSRNSKSLRTPLGTICEGCDDSSIFSHLDH 79
           D++  ITG + T  ++ F   S+ C+ SSG+ N    + P+G  C    +      +DH
Sbjct: 286 DNVQLITGVDFTGTTVGFARVSAMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDH 344


>gi|166063983 interleukin 17 receptor D [Homo sapiens]
          Length = 739

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 64  ICEGCDDSSIFSHLDHSSKWSSTY 87
           +C      +I+SHLD  S  SSTY
Sbjct: 320 MCRKKQQENIYSHLDEESSESSTY 343


>gi|23200041 tumor necrosis factor receptor superfamily, member 14
          precursor [Homo sapiens]
          Length = 283

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 48 SSGSRNSKSLRTPLGTICEGCDDSSIFSHLDHSSK 82
          S G R  ++     GT+CE C   +  +HL+  SK
Sbjct: 58 SPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSK 92


>gi|60498982 amine oxidase, copper containing 2 isoform a [Homo
           sapiens]
          Length = 729

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 46  ARSSGSRNSKSLRTPLGTICEGCDDSSIFSHLDHSSKWSSTYGH 89
           A S  SRNS     PL    +G    S+  +L  SS WS T+GH
Sbjct: 293 ASSLRSRNSPGPLPPLQFSPQG-SQYSVQGNLVVSSLWSFTFGH 335


>gi|60498984 amine oxidase, copper containing 2 isoform b [Homo
           sapiens]
          Length = 756

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 46  ARSSGSRNSKSLRTPLGTICEGCDDSSIFSHLDHSSKWSSTYGH 89
           A S  SRNS     PL    +G    S+  +L  SS WS T+GH
Sbjct: 293 ASSLRSRNSPGPLPPLQFSPQG-SQYSVQGNLVVSSLWSFTFGH 335


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.129    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,492,259
Number of Sequences: 37866
Number of extensions: 115283
Number of successful extensions: 302
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 17
length of query: 92
length of database: 18,247,518
effective HSP length: 63
effective length of query: 29
effective length of database: 15,861,960
effective search space: 459996840
effective search space used: 459996840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.