Guide to the Human Genome
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Name: LOC653097 Sequence: fasta or formatted (92aa) NCBI GI: 89030918
Description:

PREDICTED: similar to hCG1988827

Not currently referenced in the text

Other entries for this name:
alt mRNA {92aa} PREDICTED: similar to hCG1988827
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          5           2
 C cysteine            4.3          4           1
 D aspartate           6.5          6           2
 E glutamate           4.3          4           2
 F phenylalanine       3.3          3           1
 G glycine             9.8          9           1
 H histidine           3.3          3           1
 I isoleucine          6.5          6           1
 K lysine              2.2          2           1
 L leucine             8.7          8           2
 M methionine          3.3          3           1
 N asparagine          3.3          3           1
 P proline             2.2          2           1
 Q glutamine           1.1          1           1
 R arginine            3.3          3           1
 S serine             19.6         18           2
 T threonine           6.5          6           1
 V valine              3.3          3           1
 W tryptophan          1.1          1           1
 Y tyrosine            2.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1988827 
LOC653097             1.000   PREDICTED: similar to hCG1988827 
LOC100134103          0.378   PREDICTED: similar to Na+/H+ exchanger domain conta...
NHEDC1                0.372   Na+/H+ exchanger domain containing 1 isoform 2 [Hom...
NHEDC1                0.372   Na+/H+ exchanger domain containing 1 isoform 1 [Homo...
NHEDC2                0.268   Na+/H+ exchanger domain containing 2 
DIAPH2                0.043   diaphanous 2 isoform 12C 
DIAPH2                0.043   diaphanous 2 isoform 156 
GRIN3A                0.024   glutamate receptor, ionotropic, N-methyl-D-aspartat...
DIAPH3                0.024   diaphanous homolog 3 isoform b 
DIAPH3                0.024   diaphanous homolog 3 isoform a 
LOC100292716          0.012   PREDICTED: similar to pseudoautosomal GTP-binding p...
ADAM8                 0.006   ADAM metallopeptidase domain 8 precursor 
IL17RD                0.006   interleukin 17 receptor D 
TNFRSF14              0.006   tumor necrosis factor receptor superfamily, member 1...
AOC2                  0.006   amine oxidase, copper containing 2 isoform a 
AOC2                  0.006   amine oxidase, copper containing 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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