Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 88971034
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88971034 PREDICTED: hypothetical LOC653712 [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165594 PREDICTED: hypothetical LOC653712 [Homo sapiens] 254 1e-68
gi|88971034 PREDICTED: hypothetical LOC653712 [Homo sapiens] 254 1e-68
gi|41146563 PREDICTED: hypothetical protein LOC653712 [Homo sapi... 253 2e-68
gi|16554625 WD repeat domain 10 isoform 4 [Homo sapiens] 183 2e-47
gi|16554621 WD repeat domain 10 isoform 1 [Homo sapiens] 183 2e-47
gi|16554619 WD repeat domain 10 isoform 3 [Homo sapiens] 183 2e-47
gi|16554623 WD repeat domain 10 isoform 2 [Homo sapiens] 183 2e-47
gi|42558270 HEAT repeat containing 4 [Homo sapiens] 30 0.43
gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens] 28 1.3
gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens] 28 1.3
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 28 1.6
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 28 1.6
gi|24497487 urate anion exchanger 1 isoform b [Homo sapiens] 28 2.2
gi|24497485 urate anion exchanger 1 isoform a [Homo sapiens] 28 2.2
gi|189217915 syntaxin binding protein 5 (tomosyn) isoform b [Hom... 27 2.8
gi|189217897 syntaxin binding protein 5 (tomosyn) isoform a [Hom... 27 2.8
gi|64084766 fidgetin [Homo sapiens] 26 6.3
gi|169174331 PREDICTED: hypothetical protein [Homo sapiens] 26 8.2
gi|169172659 PREDICTED: hypothetical protein [Homo sapiens] 26 8.2
gi|169172837 PREDICTED: hypothetical protein [Homo sapiens] 26 8.2
gi|148727255 microtubule associated serine/threonine kinase fami... 26 8.2
>gi|169165594 PREDICTED: hypothetical LOC653712 [Homo sapiens]
Length = 121
Score = 254 bits (649), Expect = 1e-68
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS
Sbjct: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
Query: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVFISALEVPQVTGSTCPLSALARPVRPGKPGPWLV 120
IFPVHWQKLQGFVVGYNGSKIFCLHVFISALEVPQVTGSTCPLSALARPVRPGKPGPWLV
Sbjct: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVFISALEVPQVTGSTCPLSALARPVRPGKPGPWLV 120
Query: 121 L 121
L
Sbjct: 121 L 121
>gi|88971034 PREDICTED: hypothetical LOC653712 [Homo sapiens]
Length = 121
Score = 254 bits (649), Expect = 1e-68
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS
Sbjct: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
Query: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVFISALEVPQVTGSTCPLSALARPVRPGKPGPWLV 120
IFPVHWQKLQGFVVGYNGSKIFCLHVFISALEVPQVTGSTCPLSALARPVRPGKPGPWLV
Sbjct: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVFISALEVPQVTGSTCPLSALARPVRPGKPGPWLV 120
Query: 121 L 121
L
Sbjct: 121 L 121
>gi|41146563 PREDICTED: hypothetical protein LOC653712 [Homo
sapiens]
Length = 121
Score = 253 bits (646), Expect = 2e-68
Identities = 120/121 (99%), Positives = 121/121 (100%)
Query: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS
Sbjct: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
Query: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVFISALEVPQVTGSTCPLSALARPVRPGKPGPWLV 120
IFPVHWQKLQGFVVGYNGSKIFCLHVFISA+EVPQVTGSTCPLSALARPVRPGKPGPWLV
Sbjct: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVFISAVEVPQVTGSTCPLSALARPVRPGKPGPWLV 120
Query: 121 L 121
L
Sbjct: 121 L 121
>gi|16554625 WD repeat domain 10 isoform 4 [Homo sapiens]
Length = 1131
Score = 183 bits (465), Expect = 2e-47
Identities = 91/96 (94%), Positives = 92/96 (95%), Gaps = 1/96 (1%)
Query: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGG LNIKAS
Sbjct: 411 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKAS 470
Query: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVF-ISALEVPQ 95
FPVH QKLQGFVVGYNGSKIFCLHVF ISA+EVPQ
Sbjct: 471 TFPVHRQKLQGFVVGYNGSKIFCLHVFSISAVEVPQ 506
>gi|16554621 WD repeat domain 10 isoform 1 [Homo sapiens]
Length = 1292
Score = 183 bits (465), Expect = 2e-47
Identities = 91/96 (94%), Positives = 92/96 (95%), Gaps = 1/96 (1%)
Query: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGG LNIKAS
Sbjct: 573 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKAS 632
Query: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVF-ISALEVPQ 95
FPVH QKLQGFVVGYNGSKIFCLHVF ISA+EVPQ
Sbjct: 633 TFPVHRQKLQGFVVGYNGSKIFCLHVFSISAVEVPQ 668
>gi|16554619 WD repeat domain 10 isoform 3 [Homo sapiens]
Length = 1182
Score = 183 bits (465), Expect = 2e-47
Identities = 91/96 (94%), Positives = 92/96 (95%), Gaps = 1/96 (1%)
Query: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGG LNIKAS
Sbjct: 463 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKAS 522
Query: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVF-ISALEVPQ 95
FPVH QKLQGFVVGYNGSKIFCLHVF ISA+EVPQ
Sbjct: 523 TFPVHRQKLQGFVVGYNGSKIFCLHVFSISAVEVPQ 558
>gi|16554623 WD repeat domain 10 isoform 2 [Homo sapiens]
Length = 1241
Score = 183 bits (465), Expect = 2e-47
Identities = 91/96 (94%), Positives = 92/96 (95%), Gaps = 1/96 (1%)
Query: 1 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGNLNIKAS 60
MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGG LNIKAS
Sbjct: 522 MSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKAS 581
Query: 61 IFPVHWQKLQGFVVGYNGSKIFCLHVF-ISALEVPQ 95
FPVH QKLQGFVVGYNGSKIFCLHVF ISA+EVPQ
Sbjct: 582 TFPVHRQKLQGFVVGYNGSKIFCLHVFSISAVEVPQ 617
>gi|42558270 HEAT repeat containing 4 [Homo sapiens]
Length = 979
Score = 30.0 bits (66), Expect = 0.43
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 87 FISALEVPQVTGSTCPLSALARPVRPGKPGPWL 119
F + +P+ C A+ +PV+P P PWL
Sbjct: 880 FQDEMVLPRRPSEVCDTEAVIKPVKPRAPNPWL 912
>gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens]
Length = 457
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 66 WQKLQGFVVGYNGSKIFCLHV----FISALEVPQVTGSTCPLSALARPVRPGKPG 116
W+ L GFV+ + S C+HV + L + V P+RP PG
Sbjct: 390 WEAL-GFVIAFGYSMFLCVHVKLYILLGVLSLTMVAYGLVECVESKNPIRPHAPG 443
>gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens]
Length = 415
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 66 WQKLQGFVVGYNGSKIFCLHV----FISALEVPQVTGSTCPLSALARPVRPGKPG 116
W+ L GFV+ + S C+HV + L + V P+RP PG
Sbjct: 348 WEAL-GFVIAFGYSMFLCVHVKLYILLGVLSLTMVAYGLVECVESKNPIRPHAPG 401
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 94 PQVTGSTCPLSALARPVRPGKPGP 117
P VTG P L +P PG+PGP
Sbjct: 274 PGVTGFPGPQGPLGKPGAPGEPGP 297
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 94 PQVTGSTCPLSALARPVRPGKPGP 117
P VTG P L +P PG+PGP
Sbjct: 274 PGVTGFPGPQGPLGKPGAPGEPGP 297
>gi|24497487 urate anion exchanger 1 isoform b [Homo sapiens]
Length = 332
Score = 27.7 bits (60), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 78 GSKIFCLHVFISALEVPQVTGSTCPLSALAR 108
GS IF L +FI +++P G+ LS L R
Sbjct: 154 GSNIFLLQMFIGVVDIPAKMGALLLLSHLGR 184
>gi|24497485 urate anion exchanger 1 isoform a [Homo sapiens]
Length = 553
Score = 27.7 bits (60), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 78 GSKIFCLHVFISALEVPQVTGSTCPLSALAR 108
GS IF L +FI +++P G+ LS L R
Sbjct: 375 GSNIFLLQMFIGVVDIPAKMGALLLLSHLGR 405
>gi|189217915 syntaxin binding protein 5 (tomosyn) isoform b [Homo
sapiens]
Length = 1151
Score = 27.3 bits (59), Expect = 2.8
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 7 KLAVVDENDTCLVYDIDTKELLFQ---EPNANSVAWNTQCEDMLCFSGGGNLNI 57
KL + E+ T +++D+ +K+ ++ + +SVAW+ + + +C G L I
Sbjct: 210 KLLIGFESGTVVLWDLKSKKADYRYTYDEAIHSVAWHHEGKQFICSHSDGTLTI 263
>gi|189217897 syntaxin binding protein 5 (tomosyn) isoform a [Homo
sapiens]
Length = 1115
Score = 27.3 bits (59), Expect = 2.8
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 7 KLAVVDENDTCLVYDIDTKELLFQ---EPNANSVAWNTQCEDMLCFSGGGNLNI 57
KL + E+ T +++D+ +K+ ++ + +SVAW+ + + +C G L I
Sbjct: 210 KLLIGFESGTVVLWDLKSKKADYRYTYDEAIHSVAWHHEGKQFICSHSDGTLTI 263
>gi|64084766 fidgetin [Homo sapiens]
Length = 759
Score = 26.2 bits (56), Expect = 6.3
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 70 QGFVVGYNGSKIFCLHVFISALEVPQVTGSTCPLSALARPVRPGKPGPWLV 120
Q + GYNGS + + A +P S S L +P P P P LV
Sbjct: 183 QEYAPGYNGSYLHSTYSSQPAPALPSPHPSPLHSSGLLQPPPPPPPPPALV 233
>gi|169174331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 25.8 bits (55), Expect = 8.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 106 LARPVRPGKPGP 117
+ARP+RPGKP P
Sbjct: 13 VARPLRPGKPAP 24
>gi|169172659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 25.8 bits (55), Expect = 8.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 106 LARPVRPGKPGP 117
+ARP+RPGKP P
Sbjct: 13 VARPLRPGKPAP 24
>gi|169172837 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 25.8 bits (55), Expect = 8.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 106 LARPVRPGKPGP 117
+ARP+RPGKP P
Sbjct: 13 VARPLRPGKPAP 24
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 25.8 bits (55), Expect = 8.2
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 94 PQVTGSTCPLSALARPVR---PGKPGP 117
PQ T PL L +PV PG PGP
Sbjct: 2097 PQPTSGGRPLEVLEKPVHLPRPGHPGP 2123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,136,354
Number of Sequences: 37866
Number of extensions: 207651
Number of successful extensions: 546
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 21
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.