Guide to the Human Genome
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Name: LOC653712 Sequence: fasta or formatted (121aa) NCBI GI: 169165594
Description:

PREDICTED: hypothetical LOC653712

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [121aa] PREDICTED: hypothetical protein LOC653712
alt mRNA [121aa] PREDICTED: hypothetical LOC653712
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6          8           1
 C cysteine            4.1          5           1
 D aspartate           4.1          5           1
 E glutamate           4.1          5           1
 F phenylalanine       5.0          6           1
 G glycine             7.4          9           3
 H histidine           1.7          2           1
 I isoleucine          4.1          5           1
 K lysine              5.8          7           2
 L leucine            10.7         13           2
 M methionine          1.7          2           1
 N asparagine          5.8          7           1
 P proline             6.6          8           1
 Q glutamine           4.1          5           1
 R arginine            2.5          3           1
 S serine              7.4          9           1
 T threonine           4.1          5           1
 V valine              9.9         12           2
 W tryptophan          2.5          3           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical LOC653712 
LOC653712             1.000   PREDICTED: hypothetical LOC653712 
LOC653712             0.996   PREDICTED: hypothetical protein LOC653712 
IFT122                0.690   WD repeat domain 10 isoform 4 
IFT122                0.690   WD repeat domain 10 isoform 1 
IFT122                0.690   WD repeat domain 10 isoform 3 
IFT122                0.690   WD repeat domain 10 isoform 2 
HEATR4                0.022   HEAT repeat containing 4 
UNC93A                0.013   unc-93 homolog A isoform 1 
UNC93A                0.013   unc-93 homolog A isoform 2 
COL8A1                0.013   alpha 1 type VIII collagen precursor 
COL8A1                0.013   alpha 1 type VIII collagen precursor 
SLC22A12              0.013   urate anion exchanger 1 isoform b 
SLC22A12              0.013   urate anion exchanger 1 isoform a 
STXBP5                0.009   syntaxin binding protein 5 (tomosyn) isoform b [Hom...
STXBP5                0.009   syntaxin binding protein 5 (tomosyn) isoform a [Hom...
FIGN                  0.004   fidgetin 
LOC100129596          0.004   PREDICTED: hypothetical protein 
LOC100129596          0.004   PREDICTED: hypothetical protein 
LOC100129596          0.004   PREDICTED: hypothetical protein 
MAST4                 0.004   microtubule associated serine/threonine kinase fami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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