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Search of human proteins with 83281452
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|83281452 galactosylceramidase isoform b precursor [Homo
sapiens]
(407 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|83281452 galactosylceramidase isoform b precursor [Homo sapiens] 859 0.0
gi|83281450 galactosylceramidase isoform a precursor [Homo sapiens] 810 0.0
gi|38638698 KIAA1199 [Homo sapiens] 34 0.27
gi|197276625 solute carrier family 6 (neurotransmitter transport... 30 5.1
gi|197276623 solute carrier family 6 (neurotransmitter transport... 30 5.1
gi|54607094 solute carrier family 6 (neurotransmitter transporte... 30 5.1
gi|239757286 PREDICTED: similar to Fc fragment of IgG binding pr... 29 6.7
gi|215490104 calpain 11 [Homo sapiens] 29 8.7
gi|209447096 transmembrane protein 2 isoform b [Homo sapiens] 29 8.7
gi|7019555 transmembrane protein 2 isoform a [Homo sapiens] 29 8.7
>gi|83281452 galactosylceramidase isoform b precursor [Homo sapiens]
Length = 407
Score = 859 bits (2220), Expect = 0.0
Identities = 407/407 (100%), Positives = 407/407 (100%)
Query: 1 MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA 60
MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA
Sbjct: 1 MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA 60
Query: 61 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA 120
VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA
Sbjct: 61 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA 120
Query: 121 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV 180
LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV
Sbjct: 121 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV 180
Query: 181 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD 240
GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD
Sbjct: 181 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD 240
Query: 241 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY 300
AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY
Sbjct: 241 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY 300
Query: 301 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT 360
MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT
Sbjct: 301 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT 360
Query: 361 VGHLEKGGSYVALTDGLGNLTIIIETMVNFCCCYWINSLLYYWKNKI 407
VGHLEKGGSYVALTDGLGNLTIIIETMVNFCCCYWINSLLYYWKNKI
Sbjct: 361 VGHLEKGGSYVALTDGLGNLTIIIETMVNFCCCYWINSLLYYWKNKI 407
>gi|83281450 galactosylceramidase isoform a precursor [Homo sapiens]
Length = 685
Score = 810 bits (2092), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA 60
MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA
Sbjct: 1 MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA 60
Query: 61 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA 120
VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA
Sbjct: 61 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA 120
Query: 121 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV 180
LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV
Sbjct: 121 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV 180
Query: 181 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD 240
GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD
Sbjct: 181 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD 240
Query: 241 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY 300
AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY
Sbjct: 241 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY 300
Query: 301 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT 360
MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT
Sbjct: 301 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT 360
Query: 361 VGHLEKGGSYVALTDGLGNLTIIIETM 387
VGHLEKGGSYVALTDGLGNLTIIIETM
Sbjct: 361 VGHLEKGGSYVALTDGLGNLTIIIETM 387
>gi|38638698 KIAA1199 [Homo sapiens]
Length = 1361
Score = 33.9 bits (76), Expect = 0.27
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 51 LGREFDGIGAVSGGGATSRLLVNYPE------PYRSQILDYLFKPNFGASL--------- 95
+G E DG+ + G SR ++ E PYR+ I ++ FG +
Sbjct: 478 IGEEIDGVDMRAEVGLLSRNIIVMGEMEDKCYPYRNHICNFFDFDTFGGHIKFALGFKAA 537
Query: 96 HILKVEIGGDGQTTDGTEPSHMHYALDENYFRGYE 130
H+ E+ GQ G P H H A D + GY+
Sbjct: 538 HLEGTELKHMGQQLVGQYPIHFHLAGDVDERGGYD 572
>gi|197276625 solute carrier family 6 (neurotransmitter transporter,
taurine), member 6 isoform b [Homo sapiens]
Length = 200
Score = 29.6 bits (65), Expect = 5.1
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 26/94 (27%)
Query: 281 SDMGAGCWGRI------------LNQNYINGYMTSTIAWN---LVASYYEQLPYGRCGLM 325
S+ G CW +I + + +N Y +AW L S+ ++LP+ C
Sbjct: 106 SEGGITCWEKICPLFSGIGYASVVIVSLLNVYYIVILAWATYYLFQSFQKELPWAHCN-- 163
Query: 326 TAQEPWSGHYVVESP------VWVSAHTTQFTQP 353
W+ + +E VW++ +T FT P
Sbjct: 164 ---HSWNTPHCMEDTMRKNKSVWITISSTNFTSP 194
>gi|197276623 solute carrier family 6 (neurotransmitter transporter,
taurine), member 6 isoform a [Homo sapiens]
Length = 620
Score = 29.6 bits (65), Expect = 5.1
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 26/94 (27%)
Query: 281 SDMGAGCWGRI------------LNQNYINGYMTSTIAWN---LVASYYEQLPYGRCGLM 325
S+ G CW +I + + +N Y +AW L S+ ++LP+ C
Sbjct: 106 SEGGITCWEKICPLFSGIGYASVVIVSLLNVYYIVILAWATYYLFQSFQKELPWAHCN-- 163
Query: 326 TAQEPWSGHYVVESP------VWVSAHTTQFTQP 353
W+ + +E VW++ +T FT P
Sbjct: 164 ---HSWNTPHCMEDTMRKNKSVWITISSTNFTSP 194
>gi|54607094 solute carrier family 6 (neurotransmitter transporter,
taurine), member 6 isoform a [Homo sapiens]
Length = 620
Score = 29.6 bits (65), Expect = 5.1
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 26/94 (27%)
Query: 281 SDMGAGCWGRI------------LNQNYINGYMTSTIAWN---LVASYYEQLPYGRCGLM 325
S+ G CW +I + + +N Y +AW L S+ ++LP+ C
Sbjct: 106 SEGGITCWEKICPLFSGIGYASVVIVSLLNVYYIVILAWATYYLFQSFQKELPWAHCN-- 163
Query: 326 TAQEPWSGHYVVESP------VWVSAHTTQFTQP 353
W+ + +E VW++ +T FT P
Sbjct: 164 ---HSWNTPHCMEDTMRKNKSVWITISSTNFTSP 194
>gi|239757286 PREDICTED: similar to Fc fragment of IgG binding
protein [Homo sapiens]
Length = 1472
Score = 29.3 bits (64), Expect = 6.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 317 LPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPG 354
+PYG G ++P G E W+S TT F+QPG
Sbjct: 45 VPYGAGGYSGLEQPSCGSKSGED--WISGPTTVFSQPG 80
>gi|215490104 calpain 11 [Homo sapiens]
Length = 739
Score = 28.9 bits (63), Expect = 8.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 204 NYIKILRKMLNYQGLQRVKI-IASDNLWESISASMLLDAELFKVVDVIGAHYPG 256
N +++LRK + L I + SD+ ES++ ML+ + V + HY G
Sbjct: 257 NLLRLLRKAVERSSLMGCSIEVTSDSELESMTDKMLVRGHAYSVTGLQDVHYRG 310
>gi|209447096 transmembrane protein 2 isoform b [Homo sapiens]
Length = 1320
Score = 28.9 bits (63), Expect = 8.7
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 51 LGREFDGIGAVSGGGATSRLLVNYPEPYRS-------QILDY-------LFKPNFGASLH 96
+G DG+ + G +R +V E S Q DY + NF S+H
Sbjct: 409 MGEIIDGVDMRAEVGILTRNIVIQGEVEDSCYAENQCQFFDYDTFGGHIMIMKNF-TSVH 467
Query: 97 ILKVEIGGDGQTTDGTEPSHMHYALDENYFRGY 129
+ VE+ GQ G P H H D +Y GY
Sbjct: 468 LSYVELKHMGQQQMGRYPVHFHLCGDVDYKGGY 500
>gi|7019555 transmembrane protein 2 isoform a [Homo sapiens]
Length = 1383
Score = 28.9 bits (63), Expect = 8.7
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 51 LGREFDGIGAVSGGGATSRLLVNYPEPYRS-------QILDY-------LFKPNFGASLH 96
+G DG+ + G +R +V E S Q DY + NF S+H
Sbjct: 472 MGEIIDGVDMRAEVGILTRNIVIQGEVEDSCYAENQCQFFDYDTFGGHIMIMKNF-TSVH 530
Query: 97 ILKVEIGGDGQTTDGTEPSHMHYALDENYFRGY 129
+ VE+ GQ G P H H D +Y GY
Sbjct: 531 LSYVELKHMGQQQMGRYPVHFHLCGDVDYKGGY 563
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,323,012
Number of Sequences: 37866
Number of extensions: 743024
Number of successful extensions: 1463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1461
Number of HSP's gapped (non-prelim): 10
length of query: 407
length of database: 18,247,518
effective HSP length: 105
effective length of query: 302
effective length of database: 14,271,588
effective search space: 4310019576
effective search space used: 4310019576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.