Guide to the Human Genome
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Name: GALC Sequence: fasta or formatted (407aa) NCBI GI: 83281452
Description:

galactosylceramidase isoform b precursor

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids
Lysosomes and Related Organelles

Other entries for this name:
alt prot [685aa] galactosylceramidase isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         33           3
 C cysteine            1.5          6           3
 D aspartate           4.7         19           2
 E glutamate           4.2         17           1
 F phenylalanine       2.5         10           1
 G glycine             9.8         40           3
 H histidine           2.2          9           1
 I isoleucine          5.9         24           3
 K lysine              4.9         20           2
 L leucine            10.8         44           3
 M methionine          2.5         10           1
 N asparagine          4.9         20           1
 P proline             3.7         15           1
 Q glutamine           2.7         11           1
 R arginine            3.4         14           2
 S serine              6.6         27           2
 T threonine           5.2         21           2
 V valine              5.2         21           2
 W tryptophan          4.4         18           2
 Y tyrosine            6.9         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   galactosylceramidase isoform b precursor 
GALC                  0.941   galactosylceramidase isoform a precursor 
KIAA1199              0.011   KIAA1199 
SLC6A6                0.006   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.006   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.006   solute carrier family 6 (neurotransmitter transporte...
LOC100293676          0.005   PREDICTED: similar to Fc fragment of IgG binding pr...
CAPN11                0.005   calpain 11 
TMEM2                 0.005   transmembrane protein 2 isoform b 
TMEM2                 0.005   transmembrane protein 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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