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Search of human proteins with 83035133
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|83035133 coiled-coil domain containing 108 isoform 2 [Homo
sapiens]
(164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|83035133 coiled-coil domain containing 108 isoform 2 [Homo sa... 333 5e-92
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa... 232 1e-61
gi|239751655 PREDICTED: hypothetical protein XP_002347961 [Homo ... 31 0.42
gi|4507987 zinc finger protein 136 [Homo sapiens] 31 0.42
gi|115527120 nebulin [Homo sapiens] 29 1.6
gi|189027048 ecto-NOX disulfide-thiol exchanger 1 [Homo sapiens] 29 1.6
gi|189027046 ecto-NOX disulfide-thiol exchanger 1 [Homo sapiens] 29 1.6
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 28 2.7
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 28 2.7
gi|169164173 PREDICTED: hypothetical protein [Homo sapiens] 28 2.7
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 28 2.7
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 28 2.7
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 28 3.6
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 28 3.6
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 28 3.6
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 28 3.6
gi|161016767 mucin 21 [Homo sapiens] 28 4.6
gi|157785668 coiled-coil domain containing 39 [Homo sapiens] 28 4.6
gi|153945755 zinc finger protein 608 [Homo sapiens] 27 7.9
>gi|83035133 coiled-coil domain containing 108 isoform 2 [Homo
sapiens]
Length = 164
Score = 333 bits (853), Expect = 5e-92
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MMLTQAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMD 60
MMLTQAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMD
Sbjct: 1 MMLTQAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMD 60
Query: 61 TQMHSPKKQERVNKRVIWGIEVAEELHWKGWELGKETTRNLVLKNRSLKLQKMKYRYQYK 120
TQMHSPKKQERVNKRVIWGIEVAEELHWKGWELGKETTRNLVLKNRSLKLQKMKYRYQYK
Sbjct: 61 TQMHSPKKQERVNKRVIWGIEVAEELHWKGWELGKETTRNLVLKNRSLKLQKMKYRYQYK 120
Query: 121 GSRTQCHSLEPRKQALFKTKQNKQKKPLTCHIKASECLKYVQYE 164
GSRTQCHSLEPRKQALFKTKQNKQKKPLTCHIKASECLKYVQYE
Sbjct: 121 GSRTQCHSLEPRKQALFKTKQNKQKKPLTCHIKASECLKYVQYE 164
>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
sapiens]
Length = 1925
Score = 232 bits (591), Expect = 1e-61
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MMLTQAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMD 60
MMLTQAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMD
Sbjct: 66 MMLTQAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMD 125
Query: 61 TQMHSPKKQERVNKRVIWGIEVAEELHWKGWELGKETTRNLVLKNRSLKLQKMKYR 116
TQMHSPKKQERVNKRVIWGIEVAEELHWKGWELGKETTRNLVLKNRSLKLQKMKYR
Sbjct: 126 TQMHSPKKQERVNKRVIWGIEVAEELHWKGWELGKETTRNLVLKNRSLKLQKMKYR 181
>gi|239751655 PREDICTED: hypothetical protein XP_002347961 [Homo
sapiens]
Length = 642
Score = 31.2 bits (69), Expect = 0.42
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 96 ETTRNLVLKNRSLKLQKMKYRYQYKGSRTQCHSLEPRKQALFKTKQNKQK 145
ET RNL + K Q +K Y+++G + H LE L++TK Q+
Sbjct: 277 ETMRNLASIGKKWKDQNIKDHYKHRGRNLRSHMLE----RLYQTKDGSQR 322
>gi|4507987 zinc finger protein 136 [Homo sapiens]
Length = 540
Score = 31.2 bits (69), Expect = 0.42
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 96 ETTRNLVLKNRSLKLQKMKYRYQYKGSRTQCHSLEPRKQALFKTKQNKQK 145
ET RNL + K Q +K Y+++G + H LE L++TK Q+
Sbjct: 35 ETMRNLASIGKKWKDQNIKDHYKHRGRNLRSHMLE----RLYQTKDGSQR 80
>gi|115527120 nebulin [Homo sapiens]
Length = 6669
Score = 29.3 bits (64), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 91 WELGKETTRNLVLKNRSLKLQKMKYRYQYKGSRTQCHSLEPRKQALFKTKQNKQ 144
+ L + R+L+ K ++ ++KYR Y+ S+ + S+ + L TK NKQ
Sbjct: 5417 YHLVVDEPRHLLAKTAGDQISQIKYRKNYEKSKDKFTSIVDTPEHLRTTKVNKQ 5470
>gi|189027048 ecto-NOX disulfide-thiol exchanger 1 [Homo sapiens]
Length = 643
Score = 29.3 bits (64), Expect = 1.6
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 35 IPAINDSSAAMSACSTISAQPASSMDTQMHSPKKQERVNKRVIWGIEVAEELHWKGWELG 94
I A+ ++S A S ++D ++ + GI EE+ E
Sbjct: 349 IVAVFNASTRQKAWDHFSKAQRKNIDIWRKHSEELRNAQSEQLMGIRREEEMEMSDDENC 408
Query: 95 KETTRN-------LVLKNRSLKLQKMKYRYQYKGSRTQCHSLEPRKQALFKTKQNKQK 145
T+ L + +LK + R+Q R + L+ K+ LF+T++N K
Sbjct: 409 DSPTKKMRVDESALAAQAYALKEENDSLRWQLDAYRNEVELLKQEKEQLFRTEENLTK 466
>gi|189027046 ecto-NOX disulfide-thiol exchanger 1 [Homo sapiens]
Length = 643
Score = 29.3 bits (64), Expect = 1.6
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 35 IPAINDSSAAMSACSTISAQPASSMDTQMHSPKKQERVNKRVIWGIEVAEELHWKGWELG 94
I A+ ++S A S ++D ++ + GI EE+ E
Sbjct: 349 IVAVFNASTRQKAWDHFSKAQRKNIDIWRKHSEELRNAQSEQLMGIRREEEMEMSDDENC 408
Query: 95 KETTRN-------LVLKNRSLKLQKMKYRYQYKGSRTQCHSLEPRKQALFKTKQNKQK 145
T+ L + +LK + R+Q R + L+ K+ LF+T++N K
Sbjct: 409 DSPTKKMRVDESALAAQAYALKEENDSLRWQLDAYRNEVELLKQEKEQLFRTEENLTK 466
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 2.7
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 5 QAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMDTQMH 64
++ SS S SR+ + +S GS S + + + + S+++ S S+ S +SS +
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSS-GSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
Query: 65 SPKKQERVNKR 75
SP ++ N+R
Sbjct: 125 SPSRRRHDNRR 135
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 2.7
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 5 QAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMDTQMH 64
++ SS S SR+ + +S GS S + + + + S+++ S S+ S +SS +
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSS-GSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
Query: 65 SPKKQERVNKR 75
SP ++ N+R
Sbjct: 125 SPSRRRHDNRR 135
>gi|169164173 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 28.5 bits (62), Expect = 2.7
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 77 IWGIEVAEELHWKGWELGKETTRNLVLKNRSLKLQK 112
+WG+ H GWELG T+ L L++ +++L++
Sbjct: 45 VWGLPGLSNTHLCGWELGSATSLQL-LRDTAIQLRQ 79
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 2.7
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 5 QAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMDTQMH 64
++ SS S SR+ + +S GS S + + + + S+++ S S+ S +SS +
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSS-GSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
Query: 65 SPKKQERVNKR 75
SP ++ N+R
Sbjct: 125 SPSRRRHDNRR 135
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 2.7
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 5 QAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMDTQMH 64
++ SS S SR+ + +S GS S + + + + S+++ S S+ S +SS +
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSS-GSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
Query: 65 SPKKQERVNKR 75
SP ++ N+R
Sbjct: 125 SPSRRRHDNRR 135
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 8 SSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMDTQMHSPK 67
SS S SR+ + +S GS S + + + + S+++ S S+ S +SS + SP
Sbjct: 69 SSGSSSTRSRSSSTSSSGSSTSTGSSS-GSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 68 KQERVNKR 75
++ N+R
Sbjct: 128 RRRHDNRR 135
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 8 SSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMDTQMHSPK 67
SS S SR+ + +S GS S + + + + S+++ S S+ S +SS + SP
Sbjct: 69 SSGSSSTRSRSSSTSSSGSSTSTGSSS-GSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 68 KQERVNKR 75
++ N+R
Sbjct: 128 RRRHDNRR 135
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 8 SSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMDTQMHSPK 67
SS S SR+ + +S GS S + + + + S+++ S S+ S +SS + SP
Sbjct: 69 SSGSSSTRSRSSSTSSSGSSTSTGSSS-GSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 68 KQERVNKR 75
++ N+R
Sbjct: 128 RRRHDNRR 135
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 8 SSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMDTQMHSPK 67
SS S SR+ + +S GS S + + + + S+++ S S+ S +SS + SP
Sbjct: 69 SSGSSSTRSRSSSTSSSGSSTSTGSSS-GSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Query: 68 KQERVNKR 75
++ N+R
Sbjct: 128 RRRHDNRR 135
>gi|161016767 mucin 21 [Homo sapiens]
Length = 566
Score = 27.7 bits (60), Expect = 4.6
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 8 SSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSMDTQ 62
S + NS + TV+SG S + S + + S+A S ST+S+ +++ +++
Sbjct: 370 SGTSTATNSESSTVSSGASTATTSESSTTSSGASTATNSESSTVSSGASTATNSE 424
>gi|157785668 coiled-coil domain containing 39 [Homo sapiens]
Length = 941
Score = 27.7 bits (60), Expect = 4.6
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 89 KGWELGKETTRNLVLKNRSLKLQKMKYRYQYKGSRTQCHSLEPRKQALFKTKQNKQKKPL 148
K + K ++L++++ LKL+ + R + SLE RKQ L+ + + ++
Sbjct: 545 KELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIK 604
Query: 149 TCHIKASECLKYVQYE 164
+ ++YV E
Sbjct: 605 VHKTMLASQIRYVDQE 620
>gi|153945755 zinc finger protein 608 [Homo sapiens]
Length = 1512
Score = 26.9 bits (58), Expect = 7.9
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 2 MLTQAPSSVVRSRNSRNHTVNSGGSCLSASTVAIPAINDSSAAMSACSTISAQPASSM 59
+++ P S++ ++ +N G L+ +P I++ +AA+ +CS A+ M
Sbjct: 643 LMSNGPGSIIGAKAGKNSGKKKG---LNNELNNLPVISNMTAALDSCSAADGSLAAEM 697
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.122 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,755,684
Number of Sequences: 37866
Number of extensions: 210052
Number of successful extensions: 654
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 25
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.