Guide to the Human Genome
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Name: HMP19 Sequence: fasta or formatted (171aa) NCBI GI: 7706284
Description:

HMP19 protein

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         14           3
 C cysteine            1.8          3           1
 D aspartate           2.3          4           1
 E glutamate           5.3          9           1
 F phenylalanine       4.7          8           1
 G glycine             3.5          6           1
 H histidine           3.5          6           1
 I isoleucine          5.3          9           1
 K lysine              8.8         15           1
 L leucine             7.0         12           1
 M methionine          0.6          1           1
 N asparagine          2.9          5           1
 P proline             9.4         16           2
 Q glutamine           4.1          7           1
 R arginine            3.5          6           1
 S serine              8.2         14           2
 T threonine           6.4         11           1
 V valine              9.4         16           2
 W tryptophan          0.6          1           1
 Y tyrosine            4.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HMP19 protein 
D4S234E               0.548   brain neuron cytoplasmic protein 1 
D4S234E               0.548   brain neuron cytoplasmic protein 1 
CALY                  0.237   dopamine receptor D1 interacting protein 
NCF2                  0.015   neutrophil cytosolic factor 2 
NCF2                  0.015   neutrophil cytosolic factor 2 
SLCO1C1               0.012   solute carrier organic anion transporter family, me...
SLCO1C1               0.012   solute carrier organic anion transporter family, me...
NKTR                  0.009   natural killer-tumor recognition sequence 
GAD1                  0.009   glutamate decarboxylase 1 isoform GAD67 
KIAA1109              0.009   fragile site-associated protein 
WNK4                  0.006   WNK lysine deficient protein kinase 4 
PPM1J                 0.006   protein phosphatase 1J (PP2C domain containing) [Hom...
HMCN1                 0.006   hemicentin 1 
ATXN7L1               0.006   ataxin 7-like 1 isoform 1 
ATXN7L1               0.006   ataxin 7-like 1 isoform 3 
ANK3                  0.006   ankyrin 3 isoform 2 
ANK3                  0.006   ankyrin 3 isoform 1 
CDCA2                 0.006   cell division cycle associated 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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