Guide to the Human Genome
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Name: D4S234E Sequence: fasta or formatted (185aa) NCBI GI: 7657003
Description:

brain neuron cytoplasmic protein 1

Referenced in:

Neurons

Other entries for this name:
alt mRNA [185aa] brain neuron cytoplasmic protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         12           2
 C cysteine            1.6          3           1
 D aspartate           4.3          8           1
 E glutamate           9.2         17           2
 F phenylalanine       5.4         10           1
 G glycine             3.8          7           1
 H histidine           0.5          1           1
 I isoleucine          3.2          6           1
 K lysine              9.2         17           2
 L leucine             8.6         16           2
 M methionine          1.6          3           1
 N asparagine          3.2          6           2
 P proline             6.5         12           3
 Q glutamine           4.3          8           1
 R arginine            3.2          6           1
 S serine              6.5         12           2
 T threonine           7.0         13           1
 V valine             10.3         19           3
 W tryptophan          0.5          1           1
 Y tyrosine            4.3          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   brain neuron cytoplasmic protein 1 
D4S234E               1.000   brain neuron cytoplasmic protein 1 
HMP19                 0.514   HMP19 protein 
CALY                  0.231   dopamine receptor D1 interacting protein 
MLLT4                 0.029   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.029   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.023   myeloid/lymphoid or mixed-lineage leukemia (trithora...
LOC100292811          0.020   PREDICTED: similar to proprotein convertase subtili...
LOC100290671          0.020   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.020   PREDICTED: hypothetical protein XP_002342982 
FN1                   0.017   fibronectin 1 isoform 5 preproprotein 
FN1                   0.017   fibronectin 1 isoform 6 preproprotein 
RNF170                0.012   ring finger protein 170 isoform b 
RNF170                0.012   ring finger protein 170 isoform a 
RNF170                0.012   ring finger protein 170 isoform a 
KSR2                  0.009   kinase suppressor of ras 2 
SCUBE2                0.006   CEGP1 protein 
FRAS1                 0.006   Fraser syndrome 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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