Search of human proteins with 7705859

Search of human proteins with 7705859

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7705859 alpha-1,4-N-acetylglucosaminyltransferase [Homo
sapiens]
         (340 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7705859 alpha-1,4-N-acetylglucosaminyltransferase [Homo sapiens]   714   0.0  
gi|8392830 alpha 1,4-galactosyltransferase [Homo sapiens]             207   1e-53
gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens]        34   0.21 
gi|109148552 keratin 3 [Homo sapiens]                                  32   0.62 
gi|13128864 histone deacetylase 6 [Homo sapiens]                       32   0.82 
gi|20070323 solute carrier family 30 (zinc transporter), member ...    30   3.1  
gi|109633022 mucosal vascular addressin cell adhesion molecule 1...    28   9.0  
gi|13540559 radial spokehead-like 1 [Homo sapiens]                     28   9.0  

>gi|7705859 alpha-1,4-N-acetylglucosaminyltransferase [Homo sapiens]
          Length = 340

 Score =  714 bits (1842), Expect = 0.0
 Identities = 340/340 (100%), Positives = 340/340 (100%)

Query: 1   MRKELQLSLSVTLLLVCGFLYQFTLKSSCLFCLPSFKSHQGLEALLSHRRGIVFLETSER 60
           MRKELQLSLSVTLLLVCGFLYQFTLKSSCLFCLPSFKSHQGLEALLSHRRGIVFLETSER
Sbjct: 1   MRKELQLSLSVTLLLVCGFLYQFTLKSSCLFCLPSFKSHQGLEALLSHRRGIVFLETSER 60

Query: 61  MEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAIDNVFLFPLD 120
           MEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAIDNVFLFPLD
Sbjct: 61  MEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAIDNVFLFPLD 120

Query: 121 MKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVISIRPIPEEN 180
           MKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVISIRPIPEEN
Sbjct: 121 MKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVISIRPIPEEN 180

Query: 181 FLAAQASRYSSNGIFGFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTRMLRVWCKLED 240
           FLAAQASRYSSNGIFGFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTRMLRVWCKLED
Sbjct: 181 FLAAQASRYSSNGIFGFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTRMLRVWCKLED 240

Query: 241 FQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPSFNVSYALHLWNHMNQEGRAV 300
           FQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPSFNVSYALHLWNHMNQEGRAV
Sbjct: 241 FQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPSFNVSYALHLWNHMNQEGRAV 300

Query: 301 IRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPGNK 340
           IRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPGNK
Sbjct: 301 IRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPGNK 340


>gi|8392830 alpha 1,4-galactosyltransferase [Homo sapiens]
          Length = 353

 Score =  207 bits (527), Expect = 1e-53
 Identities = 110/275 (40%), Positives = 157/275 (57%), Gaps = 13/275 (4%)

Query: 52  IVFLETSERMEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAI 111
           I FLETS+R  P  L  CSVESAA+ +PE  V+  MKGL       S   +   S LS  
Sbjct: 79  IFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGGNA--SLPRHLGISLLSCF 136

Query: 112 DNVFLFPLDMKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVI 171
            NV + PLD++ L  DTPL  WY  +    E   L + SDASR+A++WK+GGIY+DTD I
Sbjct: 137 PNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGGIYLDTDFI 196

Query: 172 SIRPIPEENFLAAQASRYSSNGIF-GFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTR 230
            ++ +     +    SRY  NG F  F   H F+  CM +FV+HYN  IWG+QGP+L+TR
Sbjct: 197 VLKNLRNLTNVLGTQSRYVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTR 256

Query: 231 MLRVWCKLEDFQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPS-----FNVSY 285
           + + WC +    E     C  ++ L P+ FYPI +++W++Y+E  D  P       + +Y
Sbjct: 257 VFKKWCSIRSLAE--SRACRGVTTLPPEAFYPIPWQDWKKYFE--DINPEELPRLLSATY 312

Query: 286 ALHLWNHMNQEGRAVIRGSNTLVENLYRKHCPRTY 320
           A+H+WN  +Q G      S  L+  L+ ++CP T+
Sbjct: 313 AVHVWNKKSQ-GTRFEATSRALLAQLHARYCPTTH 346


>gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens]
          Length = 758

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 16/174 (9%)

Query: 128 TPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVISIRPIPEENFLAAQAS 187
           TP  + Y ++  S ERNW  I  +   LA++ K  G+++  D           F   Q  
Sbjct: 577 TPKETGYTELVKSLERNWKLIRDEG--LAVMDKAKGLFLPEDENLREKGDWSQFTLWQQG 634

Query: 188 RYSSNGIFG------FLPHHPFLWECMENFVE----HYNSAIWGNQGPELMTRMLRVWCK 237
           R + N   G       L   P    C    ++    H  + +W + GP      LR+   
Sbjct: 635 RRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPT--NCRLRMHLG 692

Query: 238 LEDFQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPSFNVSYALHLWN 291
           L   +E   +RC N +    +    I    +   +EVW    SF + + + +W+
Sbjct: 693 LVIPKEGCKIRCANETKTWEEGKVLIFDDSFE--HEVWQDASSFRLIFIVDVWH 744


>gi|109148552 keratin 3 [Homo sapiens]
          Length = 628

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 290 WNHMNQEGRAVIRGSNTLVENLYRKHCP--RTYRDLIKGPEGSVTGEL 335
           WN + Q+G + I G+N L E L+  H    R+Y D I G  G +  EL
Sbjct: 230 WNLLQQQGTSSISGTNNL-EPLFENHINYLRSYLDNILGERGRLDSEL 276


>gi|13128864 histone deacetylase 6 [Homo sapiens]
          Length = 1215

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 209 ENFVEHYNSAIWGNQGPELMTRMLRVWCKLEDFQEVSDLRCLNIS 253
           +N + H N  +W +  PE+  R+LR+ C+LE+       RCL ++
Sbjct: 487 QNMMNHCN--LWDSHHPEVPQRILRIMCRLEELGLAG--RCLTLT 527


>gi|20070323 solute carrier family 30 (zinc transporter), member 5
           isoform 1 [Homo sapiens]
          Length = 765

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 180 NFLAAQASRYSSNGIFGFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTRMLRVWCKLE 239
           N L++ + R     + G+ P    L+  M +  +H + +I     P  +   L+   +  
Sbjct: 360 NILSSPSKRGQKGTLIGYSPEGTPLYNFMGDAFQHSSQSI-----PRFIKESLKQILEES 414

Query: 240 DFQEVSDLRCLNISFLHPQRFYPI 263
           D +++    CLN+ F   + FY +
Sbjct: 415 DSRQIFYFLCLNLLFTFVELFYGV 438


>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
           isoform a precursor [Homo sapiens]
          Length = 382

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 30  LFCLPSFKSHQGLEALLSHRRGIVFLETSERMEPPHLVSCSVESAAKIYPEWPVVFFMKG 89
           L+C  + +   GLE  LSHR+ I  L +    EPP   + S ES     PE P     + 
Sbjct: 202 LYCQATMRL-PGLE--LSHRQAIPVLHSPTSPEPPD--TTSPESPDTTSPESPDTTSQEP 256

Query: 90  LTDSTPMPSNSTYP 103
              ++P P + T P
Sbjct: 257 PDTTSPEPPDKTSP 270


>gi|13540559 radial spokehead-like 1 [Homo sapiens]
          Length = 717

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 165 YMDTDVISIRPIP--EENFLAAQASRYSS 191
           Y+DT V+S  P P  E N+L AQ +R S+
Sbjct: 462 YLDTPVVSYPPFPGNEANYLRAQIARISA 490


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,804,907
Number of Sequences: 37866
Number of extensions: 598930
Number of successful extensions: 1140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 9
length of query: 340
length of database: 18,247,518
effective HSP length: 103
effective length of query: 237
effective length of database: 14,347,320
effective search space: 3400314840
effective search space used: 3400314840
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.