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Search of human proteins with 7705477
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705477 tRNA methyltransferase 11-2 homolog [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705477 tRNA methyltransferase 11-2 homolog [Homo sapiens] 253 2e-68
gi|169163644 PREDICTED: similar to CG12975 [Homo sapiens] 232 5e-62
gi|88955003 PREDICTED: similar to CG12975 [Homo sapiens] 232 5e-62
gi|41190515 PREDICTED: similar to CG12975 [Homo sapiens] 232 5e-62
gi|169173209 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|169172420 PREDICTED: UPF0607 protein ENSP00000382826-like [Ho... 29 1.1
gi|169172709 PREDICTED: UPF0607 protein ENSP00000382826-like [Ho... 29 1.1
gi|212549557 zinc finger protein 860 [Homo sapiens] 29 1.1
gi|187960090 SMG5 homolog nonsense mediated mRNA decay factor [H... 27 3.1
gi|8393009 chromosome 11 open reading frame2 [Homo sapiens] 26 6.8
gi|145309317 tetratricopeptide repeat domain 30A [Homo sapiens] 26 6.8
gi|5453567 craniofacial development protein 1 [Homo sapiens] 26 6.8
gi|194353968 hypothetical protein LOC256815 [Homo sapiens] 26 8.9
>gi|7705477 tRNA methyltransferase 11-2 homolog [Homo sapiens]
Length = 125
Score = 253 bits (647), Expect = 2e-68
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN 60
MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN
Sbjct: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN 60
Query: 61 LRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSE 120
LRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSE
Sbjct: 61 LRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSE 120
Query: 121 EETES 125
EETES
Sbjct: 121 EETES 125
>gi|169163644 PREDICTED: similar to CG12975 [Homo sapiens]
Length = 135
Score = 232 bits (592), Expect = 5e-62
Identities = 118/135 (87%), Positives = 121/135 (89%), Gaps = 10/135 (7%)
Query: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNF----------VARMIPKVE 50
MKLLTHNLLSSHVRG+GSRGFPL LQATEVRICPVEFNP F V MIPKVE
Sbjct: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60
Query: 51 WSAFLEAADNLRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 110
WSAFLEAAD+LRLIQ+PKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS
Sbjct: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120
Query: 111 RGIPNMLLSEEETES 125
RGIPNMLLSEEETES
Sbjct: 121 RGIPNMLLSEEETES 135
>gi|88955003 PREDICTED: similar to CG12975 [Homo sapiens]
Length = 135
Score = 232 bits (592), Expect = 5e-62
Identities = 118/135 (87%), Positives = 121/135 (89%), Gaps = 10/135 (7%)
Query: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNF----------VARMIPKVE 50
MKLLTHNLLSSHVRG+GSRGFPL LQATEVRICPVEFNP F V MIPKVE
Sbjct: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60
Query: 51 WSAFLEAADNLRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 110
WSAFLEAAD+LRLIQ+PKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS
Sbjct: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120
Query: 111 RGIPNMLLSEEETES 125
RGIPNMLLSEEETES
Sbjct: 121 RGIPNMLLSEEETES 135
>gi|41190515 PREDICTED: similar to CG12975 [Homo sapiens]
Length = 135
Score = 232 bits (592), Expect = 5e-62
Identities = 118/135 (87%), Positives = 121/135 (89%), Gaps = 10/135 (7%)
Query: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNF----------VARMIPKVE 50
MKLLTHNLLSSHVRG+GSRGFPL LQATEVRICPVEFNP F V MIPKVE
Sbjct: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60
Query: 51 WSAFLEAADNLRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 110
WSAFLEAAD+LRLIQ+PKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS
Sbjct: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120
Query: 111 RGIPNMLLSEEETES 125
RGIPNMLLSEEETES
Sbjct: 121 RGIPNMLLSEEETES 135
>gi|169173209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 8 LLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWS 52
LL + R +G FP+R VR+C + N +++P V WS
Sbjct: 55 LLFNRQRHLGP-SFPVRWDGAPVRLCLISRNTGTPQKVLPPVVWS 98
>gi|169172420 PREDICTED: UPF0607 protein ENSP00000382826-like
[Homo sapiens]
Length = 352
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 8 LLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWS 52
LL + R +G FP+R VR+C + N +++P V WS
Sbjct: 55 LLFNRQRHLGP-SFPVRWDGAPVRLCLISRNTGTPQKVLPPVVWS 98
>gi|169172709 PREDICTED: UPF0607 protein ENSP00000382826-like
[Homo sapiens]
Length = 352
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 8 LLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWS 52
LL + R +G FP+R VR+C + N +++P V WS
Sbjct: 55 LLFNRQRHLGP-SFPVRWDGAPVRLCLISRNTGTPQKVLPPVVWS 98
>gi|212549557 zinc finger protein 860 [Homo sapiens]
Length = 632
Score = 28.9 bits (63), Expect = 1.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 62 RLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 110
R+ PK + EN F ++ L EV + E + QC ESG+ F S
Sbjct: 194 RISSRPKIHISNNYENNFFHSSLLTLKQEVHIREKSFQCNESGKAFNCS 242
>gi|187960090 SMG5 homolog nonsense mediated mRNA decay factor [Homo
sapiens]
Length = 1016
Score = 27.3 bits (59), Expect = 3.1
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 25 LQATEVRICPVEFNPNFVARMI-------PKVEWSAFLEAADNLRLIQVPKGPVEGYEEN 77
L+ + VRIC + +F+AR+ P+V + ++ L+Q + +E
Sbjct: 759 LEESVVRICCIRSFGHFIARLQGSILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAQEE 818
Query: 78 ---EEFLRTMHHLLLEVEV--IEGTLQCPES 103
+R M L L++EV +EG+LQ P++
Sbjct: 819 ARRNRLMRDMAQLRLQLEVSQLEGSLQQPKA 849
>gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]
Length = 782
Score = 26.2 bits (56), Expect = 6.8
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 34 PVEFNPNFVARMIPKVEWSAFLEAAD-------NLRLIQVPKGPVEGYEENEEFLRTMHH 86
PVEFN V I K+ LE L+ +QV ++ Y + H
Sbjct: 691 PVEFNKVSVLTGIIKISLKTLLECVRLRTFGRFGLQQVQVDCHFLQLYLWRFVADEELVH 750
Query: 87 LLLEVEVIEGTLQCPESGRMFP 108
LLL+ V L+CP+ M P
Sbjct: 751 LLLDEVVASAALRCPDPVPMEP 772
>gi|145309317 tetratricopeptide repeat domain 30A [Homo sapiens]
Length = 665
Score = 26.2 bits (56), Expect = 6.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 82 RTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNM 116
R M+HL + V ++ GTL C + F ISR I ++
Sbjct: 538 RKMYHLCI-VNLVIGTLYCAKGNYEFGISRVIKSL 571
>gi|5453567 craniofacial development protein 1 [Homo sapiens]
Length = 299
Score = 26.2 bits (56), Expect = 6.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 48 KVEWSAFLEAADNLRLIQVPKGPVEGYEENEEFLRTMHHLLLEVE 92
K++W +F E + + EGY E + FL + H E+E
Sbjct: 245 KLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDHRQFEIE 289
>gi|194353968 hypothetical protein LOC256815 [Homo sapiens]
Length = 185
Score = 25.8 bits (55), Expect = 8.9
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 10 SSHVRGV-GSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADNLRL 63
SS +RG G+R ++ +ATE+R+C P++ S L +D+L++
Sbjct: 25 SSSLRGTFGTRWEAMKAKATELRVCCARRKREAREFKPPQMRGSTRLNISDDLKI 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,686,397
Number of Sequences: 37866
Number of extensions: 181271
Number of successful extensions: 377
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 13
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.