Guide to the Human Genome
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Name: LOC391358 Sequence: fasta or formatted (135aa) NCBI GI: 169163644
Description:

PREDICTED: similar to CG12975

Not currently referenced in the text

Other entries for this name:
alt mRNA {135aa} PREDICTED: similar to CG12975
alt mRNA {135aa} PREDICTED: similar to CG12975
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          4           2
 C cysteine            2.2          3           1
 D aspartate           0.7          1           1
 E glutamate          12.6         17           3
 F phenylalanine       4.4          6           1
 G glycine             5.9          8           1
 H histidine           5.9          8           2
 I isoleucine          4.4          6           1
 K lysine              2.2          3           1
 L leucine            11.9         16           3
 M methionine          5.9          8           1
 N asparagine          3.0          4           1
 P proline             6.7          9           1
 Q glutamine           3.0          4           1
 R arginine            5.2          7           1
 S serine              7.4         10           2
 T threonine           4.4          6           1
 V valine              7.4         10           2
 W tryptophan          2.2          3           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to CG12975 
LOC391358             1.000   PREDICTED: similar to CG12975 
LOC391358             1.000   PREDICTED: similar to CG12975 
TRMT112               0.802   tRNA methyltransferase 11-2 homolog 
TCF25                 0.027   NULP1 
ZNF860                0.019   zinc finger protein 860 
LOC729792             0.016   PREDICTED: hypothetical protein 
LOC100294238          0.016   PREDICTED: hypothetical protein 
TTC30A                0.008   tetratricopeptide repeat domain 30A 
LOC100287607          0.004   PREDICTED: hypothetical protein XP_002342119 
GPR183                0.004   EBV-induced G protein-coupled receptor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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