Guide to the Human Genome
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Name: MRPS28 Sequence: fasta or formatted (187aa) NCBI GI: 7661730
Description:

mitochondrial ribosomal protein S28

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         14           2
 C cysteine            1.6          3           1
 D aspartate           3.7          7           1
 E glutamate           9.1         17           2
 F phenylalanine       5.9         11           2
 G glycine             8.0         15           2
 H histidine           3.7          7           2
 I isoleucine          2.7          5           1
 K lysine              7.0         13           1
 L leucine            10.7         20           2
 M methionine          1.6          3           1
 N asparagine          2.1          4           1
 P proline             3.7          7           1
 Q glutamine           2.7          5           1
 R arginine            8.6         16           2
 S serine              8.6         16           2
 T threonine           5.3         10           2
 V valine              6.4         12           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein S28 
GBF1                  0.014   golgi-specific brefeldin A resistant guanine nucleoti...
PENK                  0.014   proenkephalin 
PENK                  0.014   proenkephalin 
RNF135                0.009   ring finger protein 135 isoform 1 
STOX1                 0.009   storkhead box 1 isoform d 
STOX1                 0.009   storkhead box 1 isoform a 
STOX1                 0.009   storkhead box 1 isoform a 
LOC100293438          0.009   PREDICTED: hypothetical protein 
TRIM56                0.009   tripartite motif-containing 56 
TACC2                 0.009   transforming, acidic coiled-coil containing protein...
TTLL7                 0.006   tubulin tyrosine ligase-like family, member 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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