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Search of human proteins with 7657595
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657595 small membrane protein 1 [Homo sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657595 small membrane protein 1 [Homo sapiens] 328 9e-91
gi|8659559 transmembrane protein 50B [Homo sapiens] 242 1e-64
gi|71999143 opsin 4 isoform 2 [Homo sapiens] 30 1.1
gi|15150803 opsin 4 isoform 1 [Homo sapiens] 30 1.1
gi|7662020 hypothetical protein LOC9766 [Homo sapiens] 29 1.4
gi|37595752 lamin B receptor [Homo sapiens] 29 1.9
gi|37595750 lamin B receptor [Homo sapiens] 29 1.9
gi|89886484 XK, Kell blood group complex subunit-related family,... 29 1.9
gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform... 28 2.5
gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 28 2.5
gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 28 2.5
gi|11141885 solute carrier family 5 (choline transporter), membe... 27 9.3
>gi|7657595 small membrane protein 1 [Homo sapiens]
Length = 157
Score = 328 bits (842), Expect = 9e-91
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG 60
MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG
Sbjct: 1 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG 60
Query: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV 120
VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV 120
Query: 121 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>gi|8659559 transmembrane protein 50B [Homo sapiens]
Length = 158
Score = 242 bits (617), Expect = 1e-64
Identities = 109/158 (68%), Positives = 130/158 (82%), Gaps = 3/158 (1%)
Query: 1 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHA 58
M+GFL+ R EC IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP + NH++H
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 59 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGG 118
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLF+GFML FGSLIASMWILFG
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 119 YVAKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 156
YV + D VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 121 YVTQNTD-VYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
>gi|71999143 opsin 4 isoform 2 [Homo sapiens]
Length = 489
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 83 YSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFIFF 142
Y + G+TG + F G + S+I I Y+ + + G+A + AF+
Sbjct: 144 YKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFGVASKRRAAFVLL 203
Query: 143 G 143
G
Sbjct: 204 G 204
>gi|15150803 opsin 4 isoform 1 [Homo sapiens]
Length = 478
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 83 YSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFIFF 142
Y + G+TG + F G + S+I I Y+ + + G+A + AF+
Sbjct: 133 YKQWLFGETGCEFYAFCGALFGISSMITLTAIALDRYLVITRPLATFGVASKRRAAFVLL 192
Query: 143 G 143
G
Sbjct: 193 G 193
>gi|7662020 hypothetical protein LOC9766 [Homo sapiens]
Length = 303
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 23 IASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDS 82
+AS A+ V +++ ++ P +K F+HS GV +M++ V QV S
Sbjct: 122 VASTASSVALIL--LLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGV---QVALPS 176
Query: 83 YSEGCLGQTG 92
Y E G +G
Sbjct: 177 YEEAVYGSSG 186
>gi|37595752 lamin B receptor [Homo sapiens]
Length = 615
Score = 28.9 bits (63), Expect = 1.9
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 37 WIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIW 96
W++I+ ++ MK + + + ++A +++N+ V ++E L T I
Sbjct: 396 WVVINLVMLLAEMKIQDRA------VPSLAMILVNSFQLLYVVDALWNEEALLTTMDIIH 449
Query: 97 LFVGFMLAFGSLIASMWILF 116
GFMLAFG L+ W+ F
Sbjct: 450 DGFGFMLAFGDLV---WVPF 466
>gi|37595750 lamin B receptor [Homo sapiens]
Length = 615
Score = 28.9 bits (63), Expect = 1.9
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 37 WIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIW 96
W++I+ ++ MK + + + ++A +++N+ V ++E L T I
Sbjct: 396 WVVINLVMLLAEMKIQDRA------VPSLAMILVNSFQLLYVVDALWNEEALLTTMDIIH 449
Query: 97 LFVGFMLAFGSLIASMWILF 116
GFMLAFG L+ W+ F
Sbjct: 450 DGFGFMLAFGDLV---WVPF 466
>gi|89886484 XK, Kell blood group complex subunit-related family,
member 6 isoform b [Homo sapiens]
Length = 641
Score = 28.9 bits (63), Expect = 1.9
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 95 IWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFF 135
+W+ + ++ FG + +W+ Y ++ D VY G+ +FF
Sbjct: 130 LWIVLALLVFFGDVGTDLWLALDYY--RKGDYVYFGLTLFF 168
>gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform c
precursor [Homo sapiens]
Length = 899
Score = 28.5 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 93 ARIWLF-VGFMLAFGSLIASMWILFGGYVAKEK 124
AR+WL +GF L +GS+ +W + + KE+
Sbjct: 603 ARLWLLGLGFSLGYGSMFTKIWWVHTVFTKKEE 635
>gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform b
precursor [Homo sapiens]
Length = 844
Score = 28.5 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 93 ARIWLF-VGFMLAFGSLIASMWILFGGYVAKEK 124
AR+WL +GF L +GS+ +W + + KE+
Sbjct: 548 ARLWLLGLGFSLGYGSMFTKIWWVHTVFTKKEE 580
>gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform a
precursor [Homo sapiens]
Length = 961
Score = 28.5 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 93 ARIWLF-VGFMLAFGSLIASMWILFGGYVAKEK 124
AR+WL +GF L +GS+ +W + + KE+
Sbjct: 665 ARLWLLGLGFSLGYGSMFTKIWWVHTVFTKKEE 697
>gi|11141885 solute carrier family 5 (choline transporter), member 7
[Homo sapiens]
Length = 580
Score = 26.6 bits (57), Expect = 9.3
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 33 FTGWWIIIDAAVIYPTMKDFN----HSYHACGVIATI----------AFLMINAVSNGQV 78
F G WI + A+ +P + D H+ + + T+ +FL++ G +
Sbjct: 196 FVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYSWLDSFLLLML---GGI 252
Query: 79 RGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKD 125
+Y + L + A + F+ AFG L+ ++ + G + D
Sbjct: 253 PWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTD 299
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.144 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,476,708
Number of Sequences: 37866
Number of extensions: 197050
Number of successful extensions: 405
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 12
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.