Guide to the Human Genome
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Name: C6orf165 Sequence: fasta or formatted (622aa) NCBI GI: 72534780
Description:

hypothetical protein LOC154313 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {505aa} hypothetical protein LOC154313 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         39           2
 C cysteine            1.4          9           1
 D aspartate           5.0         31           2
 E glutamate           7.9         49           2
 F phenylalanine       3.5         22           1
 G glycine             4.0         25           2
 H histidine           2.6         16           2
 I isoleucine          6.8         42           2
 K lysine              6.3         39           2
 L leucine            10.5         65           3
 M methionine          3.1         19           2
 N asparagine          3.7         23           1
 P proline             4.2         26           2
 Q glutamine           5.0         31           2
 R arginine            5.8         36           2
 S serine              5.5         34           2
 T threonine           7.9         49           2
 V valine              6.4         40           2
 W tryptophan          0.6          4           1
 Y tyrosine            3.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC154313 isoform 1 
C6orf165              0.792   hypothetical protein LOC154313 isoform 2 
KRT8                  0.008   keratin 8 
AKD1                  0.008   adenylate kinase domain containing 1 isoform 1 [Hom...
EEA1                  0.008   early endosome antigen 1, 162kD 
GOLIM4                0.007   golgi integral membrane protein 4 
DOCK7                 0.007   dedicator of cytokinesis 7 
KIF11                 0.007   kinesin family member 11 
DOCK6                 0.007   dedicator of cytokinesis 6 
BAIAP3                0.006   BAI1-associated protein 3 
CENPE                 0.006   centromere protein E 
KIAA0427              0.005   hypothetical protein LOC9811 isoform 2 
KIAA0427              0.005   hypothetical protein LOC9811 isoform 1 
FASN                  0.004   fatty acid synthase 
ERC2                  0.004   cytomatrix protein p110 
HIPK2                 0.004   homeodomain interacting protein kinase 2 isoform 1 ...
PCM1                  0.004   pericentriolar material 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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