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Search of human proteins with 7106299
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7106299 ataxin 10 [Homo sapiens]
(475 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7106299 ataxin 10 [Homo sapiens] 938 0.0
gi|155030200 RAP1, GTP-GDP dissociation stimulator 1 isoform 5 [... 37 0.051
gi|155030198 RAP1, GTP-GDP dissociation stimulator 1 isoform 4 [... 37 0.051
gi|155030196 RAP1, GTP-GDP dissociation stimulator 1 isoform 3 [... 36 0.087
gi|155030194 RAP1, GTP-GDP dissociation stimulator 1 isoform 2 [... 36 0.087
gi|155030192 RAP1, GTP-GDP dissociation stimulator 1 isoform 1 [... 36 0.087
gi|37588869 ring finger protein 123 [Homo sapiens] 33 0.43
gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens] 32 1.6
gi|29540566 armadillo repeat containing, X-linked 3 [Homo sapiens] 31 2.8
gi|29540564 armadillo repeat containing, X-linked 3 [Homo sapiens] 31 2.8
gi|7705274 armadillo repeat containing, X-linked 3 [Homo sapiens] 31 2.8
gi|91206450 ankyrin and armadillo repeat containing [Homo sapiens] 31 2.8
gi|28416956 GTPase, IMAP family member 8 [Homo sapiens] 30 3.7
gi|7662162 ALEX2 protein [Homo sapiens] 30 3.7
gi|29540562 ALEX2 protein [Homo sapiens] 30 3.7
gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens] 30 4.8
gi|163792198 latrophilin 3 precursor [Homo sapiens] 30 6.3
gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof... 29 8.2
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] 29 8.2
gi|139394668 TBC1 domain family, member 9 (with GRAM domain) [Ho... 29 8.2
gi|145587088 hypothetical protein LOC165186 [Homo sapiens] 29 8.2
>gi|7106299 ataxin 10 [Homo sapiens]
Length = 475
Score = 938 bits (2424), Expect = 0.0
Identities = 475/475 (100%), Positives = 475/475 (100%)
Query: 1 MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSHA 60
MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSHA
Sbjct: 1 MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSHA 60
Query: 61 VELACRDPSQVENLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRE 120
VELACRDPSQVENLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRE
Sbjct: 61 VELACRDPSQVENLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRE 120
Query: 121 LRVEQESLLTAFRCGLQFLGNIASRNEDSQSIVWVHAFPELFLSCLNHPDKKIVAYSSMI 180
LRVEQESLLTAFRCGLQFLGNIASRNEDSQSIVWVHAFPELFLSCLNHPDKKIVAYSSMI
Sbjct: 121 LRVEQESLLTAFRCGLQFLGNIASRNEDSQSIVWVHAFPELFLSCLNHPDKKIVAYSSMI 180
Query: 181 LFTSLNHERMKELEENLNIAIDVIDAYQKHPESEWPFLIITDLFLKSPELVQAMFPKLNN 240
LFTSLNHERMKELEENLNIAIDVIDAYQKHPESEWPFLIITDLFLKSPELVQAMFPKLNN
Sbjct: 181 LFTSLNHERMKELEENLNIAIDVIDAYQKHPESEWPFLIITDLFLKSPELVQAMFPKLNN 240
Query: 241 QERVTLLDLMIAKITSDEPLTKDDIPVFLRHAELIASTFVDQCKTVLKLASEEPPDDEEA 300
QERVTLLDLMIAKITSDEPLTKDDIPVFLRHAELIASTFVDQCKTVLKLASEEPPDDEEA
Sbjct: 241 QERVTLLDLMIAKITSDEPLTKDDIPVFLRHAELIASTFVDQCKTVLKLASEEPPDDEEA 300
Query: 301 LATIRLLDVLCEMTVNTELLGYLQVFPGLLERVIDLLRVIHVAGKETTNIFSNCGCVRAE 360
LATIRLLDVLCEMTVNTELLGYLQVFPGLLERVIDLLRVIHVAGKETTNIFSNCGCVRAE
Sbjct: 301 LATIRLLDVLCEMTVNTELLGYLQVFPGLLERVIDLLRVIHVAGKETTNIFSNCGCVRAE 360
Query: 361 GDISNVANGFKSHLIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIY 420
GDISNVANGFKSHLIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIY
Sbjct: 361 GDISNVANGFKSHLIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIY 420
Query: 421 AIRNLTEDNSQNQDLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKSTRDTPKP 475
AIRNLTEDNSQNQDLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKSTRDTPKP
Sbjct: 421 AIRNLTEDNSQNQDLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKSTRDTPKP 475
>gi|155030200 RAP1, GTP-GDP dissociation stimulator 1 isoform 5
[Homo sapiens]
Length = 558
Score = 36.6 bits (83), Expect = 0.051
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 287 LKLASEEPPDDEEALATIRLLDVLCEMTVNT----ELLGYLQVFPGLLERVIDL-LRVIH 341
LK+ + + +D LL L + T + G LQ+F LL +V +
Sbjct: 11 LKITAVDKTEDSLEGCLDCLLQALAQNNTETSEKIQASGILQLFASLLTPQSSCKAKVAN 70
Query: 342 VAGKETTNIFSNCGCVRAE--GDISNVANGFKSHLI----RLIGNLCYKNKDNQDKVNEL 395
+ + N F CV A + + N ++ R +GN+CY + Q ++ +
Sbjct: 71 IIAEVAKNEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHSLQAQLINM 130
Query: 396 DGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQ 433
IP ++ I N LT+ + A NL E S +
Sbjct: 131 GVIPTLVKLLGIHCQNAALTEMCLVAFGNLAELESSKE 168
>gi|155030198 RAP1, GTP-GDP dissociation stimulator 1 isoform 4
[Homo sapiens]
Length = 559
Score = 36.6 bits (83), Expect = 0.051
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 287 LKLASEEPPDDEEALATIRLLDVLCEMTVNT----ELLGYLQVFPGLLERVIDL-LRVIH 341
LK+ + + +D LL L + T + G LQ+F LL +V +
Sbjct: 12 LKITAVDKTEDSLEGCLDCLLQALAQNNTETSEKIQASGILQLFASLLTPQSSCKAKVAN 71
Query: 342 VAGKETTNIFSNCGCVRAE--GDISNVANGFKSHLI----RLIGNLCYKNKDNQDKVNEL 395
+ + N F CV A + + N ++ R +GN+CY + Q ++ +
Sbjct: 72 IIAEVAKNEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHSLQAQLINM 131
Query: 396 DGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQ 433
IP ++ I N LT+ + A NL E S +
Sbjct: 132 GVIPTLVKLLGIHCQNAALTEMCLVAFGNLAELESSKE 169
>gi|155030196 RAP1, GTP-GDP dissociation stimulator 1 isoform 3
[Homo sapiens]
Length = 607
Score = 35.8 bits (81), Expect = 0.087
Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 287 LKLASEEPPDDEEALATIRLLDVLCEMTVNT----ELLGYLQVFPGLLERVIDL-LRVIH 341
LK+ + + +D LL L + T + G LQ+F LL +V +
Sbjct: 11 LKITAVDKTEDSLEGCLDCLLQALAQNNTETSEKIQASGILQLFASLLTPQSSCKAKVAN 70
Query: 342 VAGKETTNIFSNCGCVRAE--GDISNVANGFKSHLI----RLIGNLCYKNKDNQDKVNEL 395
+ + N F CV A + + N ++ R +GN+CY + + + V++
Sbjct: 71 IIAEVAKNEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHEGRSAVDQA 130
Query: 396 DGIPLILDN----CNISDSNPFLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLLK 451
G +++D+ C+I+D P + + L +++N L A++ G+ +L+K
Sbjct: 131 GGAQIVIDHLRSLCSITD--PANEKLLTVFCGMLMNYSNENDSLQAQLINMGVI-PTLVK 187
Query: 452 KVGFEVE 458
+G +
Sbjct: 188 LLGIHCQ 194
>gi|155030194 RAP1, GTP-GDP dissociation stimulator 1 isoform 2
[Homo sapiens]
Length = 607
Score = 35.8 bits (81), Expect = 0.087
Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 287 LKLASEEPPDDEEALATIRLLDVLCEMTVNT----ELLGYLQVFPGLLERVIDL-LRVIH 341
LK+ + + +D LL L + T + G LQ+F LL +V +
Sbjct: 12 LKITAVDKTEDSLEGCLDCLLQALAQNNTETSEKIQASGILQLFASLLTPQSSCKAKVAN 71
Query: 342 VAGKETTNIFSNCGCVRAE--GDISNVANGFKSHLI----RLIGNLCYKNKDNQDKVNEL 395
+ + N F CV A + + N ++ R +GN+CY + + + V++
Sbjct: 72 IIAEVAKNEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHEGRSAVDQA 131
Query: 396 DGIPLILDN----CNISDSNPFLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLLK 451
G +++D+ C+I+D P + + L +++N L A++ G+ +L+K
Sbjct: 132 GGAQIVIDHLRSLCSITD--PANEKLLTVFCGMLMNYSNENDSLQAQLINMGVI-PTLVK 188
Query: 452 KVGFEVE 458
+G +
Sbjct: 189 LLGIHCQ 195
>gi|155030192 RAP1, GTP-GDP dissociation stimulator 1 isoform 1
[Homo sapiens]
Length = 608
Score = 35.8 bits (81), Expect = 0.087
Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 287 LKLASEEPPDDEEALATIRLLDVLCEMTVNT----ELLGYLQVFPGLLERVIDL-LRVIH 341
LK+ + + +D LL L + T + G LQ+F LL +V +
Sbjct: 12 LKITAVDKTEDSLEGCLDCLLQALAQNNTETSEKIQASGILQLFASLLTPQSSCKAKVAN 71
Query: 342 VAGKETTNIFSNCGCVRAE--GDISNVANGFKSHLI----RLIGNLCYKNKDNQDKVNEL 395
+ + N F CV A + + N ++ R +GN+CY + + + V++
Sbjct: 72 IIAEVAKNEFMRIPCVDAGLISPLVQLLNSKDQEVLLQTGRALGNICYDSHEGRSAVDQA 131
Query: 396 DGIPLILDN----CNISDSNPFLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLLK 451
G +++D+ C+I+D P + + L +++N L A++ G+ +L+K
Sbjct: 132 GGAQIVIDHLRSLCSITD--PANEKLLTVFCGMLMNYSNENDSLQAQLINMGVI-PTLVK 188
Query: 452 KVGFEVE 458
+G +
Sbjct: 189 LLGIHCQ 195
>gi|37588869 ring finger protein 123 [Homo sapiens]
Length = 1314
Score = 33.5 bits (75), Expect = 0.43
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 26 LRALTALFKEQRNRETAPRTIFQRVLDI----LKKSSH----------AVELACRDPSQV 71
LR L L + NR TA R +F RV+ + L+ H V+L R P+
Sbjct: 1108 LRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTGILVQLLVRGPASE 1167
Query: 72 ENLASSLQLITECFRCLRNAC 92
A+S+ L CF+ LR+ C
Sbjct: 1168 REQATSVLLADPCFQ-LRSIC 1187
>gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens]
Length = 453
Score = 31.6 bits (70), Expect = 1.6
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 374 LIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQ 433
L+ L N Y NQ+ + EL G+P+I I +P + + A+ NL+ N++NQ
Sbjct: 227 LVTLGNNAAYSF--NQNAIRELGGVPIIAK--LIKTKDPIIREKTYNALNNLSV-NAENQ 281
Query: 434 DLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKST 469
I Q + D +++ ++ V+ G +L+ T
Sbjct: 282 GKIKTYISQ-VCDDTMVCRLDSAVQMAGLRLLTNMT 316
>gi|29540566 armadillo repeat containing, X-linked 3 [Homo sapiens]
Length = 379
Score = 30.8 bits (68), Expect = 2.8
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 374 LIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQ 433
LI L N Y N+D + +L G+P++ N D P + + + + NL+ N++NQ
Sbjct: 143 LIALGNNAAYAF--NRDIIRDLGGLPIVAKILNTRD--PIVKEKALIVLNNLSV-NAENQ 197
Query: 434 DLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKST 469
+ K+ + D ++ ++ V+ G +L+ T
Sbjct: 198 RRL-KVYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
>gi|29540564 armadillo repeat containing, X-linked 3 [Homo sapiens]
Length = 379
Score = 30.8 bits (68), Expect = 2.8
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 374 LIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQ 433
LI L N Y N+D + +L G+P++ N D P + + + + NL+ N++NQ
Sbjct: 143 LIALGNNAAYAF--NRDIIRDLGGLPIVAKILNTRD--PIVKEKALIVLNNLSV-NAENQ 197
Query: 434 DLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKST 469
+ K+ + D ++ ++ V+ G +L+ T
Sbjct: 198 RRL-KVYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
>gi|7705274 armadillo repeat containing, X-linked 3 [Homo sapiens]
Length = 379
Score = 30.8 bits (68), Expect = 2.8
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 374 LIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQ 433
LI L N Y N+D + +L G+P++ N D P + + + + NL+ N++NQ
Sbjct: 143 LIALGNNAAYAF--NRDIIRDLGGLPIVAKILNTRD--PIVKEKALIVLNNLSV-NAENQ 197
Query: 434 DLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKST 469
+ K+ + D ++ ++ V+ G +L+ T
Sbjct: 198 RRL-KVYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
>gi|91206450 ankyrin and armadillo repeat containing [Homo sapiens]
Length = 1363
Score = 30.8 bits (68), Expect = 2.8
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 373 HLIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQN 432
+++ I LC N++NQ V E G+P ++ +S + L AI + DN +
Sbjct: 771 NVMNCIRVLCIGNENNQRAVREHKGLPYLIR--FLSSDSDVLKAVSSAAIAEVGRDNKEI 828
Query: 433 QDLIAKMEEQGLADASLLKKVGFEVEKKG 461
QD IA ME +L K V+ KG
Sbjct: 829 QDAIA-MEGAIPPLVALFKGKQISVQMKG 856
>gi|28416956 GTPase, IMAP family member 8 [Homo sapiens]
Length = 665
Score = 30.4 bits (67), Expect = 3.7
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 217 FLIITDL--FLKSPELVQAMFPKLNNQERVTLLDLMIAKITSDEPLTKDDIPVFLRHAEL 274
FL++T L + K+ E A+ + N + MI +T E L D+ FLR++
Sbjct: 327 FLLVTPLGFYTKNDE---AVLSTIQNNFGEKFFEYMIILLTRKEDLGDQDLDTFLRNSNK 383
Query: 275 IASTFVDQCKTVLKLASEEPPDDEEALATIRLLDVLCEM 313
+ +CK + +EE LL+ + M
Sbjct: 384 ALYGLIQKCKNRYSAFNYRATGEEEQRQADELLEKIESM 422
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 30.4 bits (67), Expect = 3.7
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 388 NQDKVNELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQ 433
NQ+ + +L G+P+I + N +D P + + + A+ NL+E N +NQ
Sbjct: 420 NQETIRKLGGLPIIANMINKTD--PHIKEKALMAMNNLSE-NYENQ 462
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 30.4 bits (67), Expect = 3.7
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 388 NQDKVNELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQ 433
NQ+ + +L G+P+I + N +D P + + + A+ NL+E N +NQ
Sbjct: 420 NQETIRKLGGLPIIANMINKTD--PHIKEKALMAMNNLSE-NYENQ 462
>gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens]
Length = 712
Score = 30.0 bits (66), Expect = 4.8
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 25 ALRALTALFKEQRNRETAPRTIFQRVLDILKKSSHAVELACRDPSQVENLASSLQLITE 83
A RAL LF +RNR R + +I H V RD S E L S L L+ E
Sbjct: 439 AFRALRFLFSMERNRPLFKRLFPTDLFEIFIDIGHYV----RDISAYEELVSKLNLLVE 493
>gi|163792198 latrophilin 3 precursor [Homo sapiens]
Length = 1469
Score = 29.6 bits (65), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 402 LDNCNISDSNPFLTQWVIYAI 422
LDN N D+ PF+ WVI AI
Sbjct: 1060 LDNINYEDNRPFIKSWVIGAI 1080
>gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform
2 [Homo sapiens]
Length = 1562
Score = 29.3 bits (64), Expect = 8.2
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 4 PRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKS 57
P PPP R++G P P+QD E + T + + +E QR+ ++ ++
Sbjct: 156 PLPPPQRITG---PKPLQDPEVQKHATQILRNMLRQEEKE---LQRICEVYSRN 203
>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
Length = 4624
Score = 29.3 bits (64), Expect = 8.2
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 101 SIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFL------------GNIASRNED 148
++ N D I +A + ++F ++ S T R G+ F+ G + R+
Sbjct: 2360 TLANGDRIPMAPNCKIIFEPHNIDNASPATVSRNGMVFMSSSILDWSPILEGFLKKRSPQ 2419
Query: 149 SQSIV---WVHAFPELFLSCLNHPDKKIVAYSSMILFTSLN 186
I+ + +FP+L+ C+ + + K+ + ++ S+N
Sbjct: 2420 EAEILRQLYTESFPDLYRFCIQNLEYKMEVLEAFVITQSIN 2460
>gi|139394668 TBC1 domain family, member 9 (with GRAM domain) [Homo
sapiens]
Length = 1266
Score = 29.3 bits (64), Expect = 8.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 237 KLNNQERVTLLDLMIAKITSDEPLTKDDIPVFLRHAELIASTFVDQCKTVLKLASEEPPD 296
+ N+QE L L + S KD +P +L F++ CKT+ + SE+P +
Sbjct: 994 RANSQENRNYLRLWTPENKSKSKNAKD-LP------KLNQGQFIELCKTMYNMFSEDPNE 1046
Query: 297 DEEALATIRLLDVLCEM 313
E AT + +L E+
Sbjct: 1047 QELYHATAAVTSLLLEI 1063
>gi|145587088 hypothetical protein LOC165186 [Homo sapiens]
Length = 1019
Score = 29.3 bits (64), Expect = 8.2
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 356 CVRAEGDISNVANGFKSHLIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLT 415
C+ G+++N+ + I +G+L K N D+ E L+ ++D+N F+
Sbjct: 533 CLVVTGEVTNLRSKVSHLAISTLGDLFQALKKNMDQEAEEIARCLLQ---KMADTNEFIQ 589
Query: 416 QWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLLKKVGFE-----VEKKGEKLILKSTR 470
+ ++R + E+ + + L+ L++K E +E+ G + +L TR
Sbjct: 590 RAAGQSLRAMVENVTLARSLVVLTSAGVYHRNPLIRKYAAEHLSAVLEQIGAEKLLSGTR 649
Query: 471 DT 472
D+
Sbjct: 650 DS 651
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,443,388
Number of Sequences: 37866
Number of extensions: 741643
Number of successful extensions: 2017
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2001
Number of HSP's gapped (non-prelim): 31
length of query: 475
length of database: 18,247,518
effective HSP length: 106
effective length of query: 369
effective length of database: 14,233,722
effective search space: 5252243418
effective search space used: 5252243418
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.