Guide to the Human Genome
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Name: KHDC1 Sequence: fasta or formatted (164aa) NCBI GI: 117956389
Description:

KH homology domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          6           1
 C cysteine            3.0          5           2
 D aspartate           4.3          7           2
 E glutamate           4.9          8           2
 F phenylalanine       3.7          6           1
 G glycine             6.7         11           1
 H histidine           6.1         10           2
 I isoleucine          3.7          6           1
 K lysine              1.2          2           2
 L leucine            10.4         17           2
 M methionine          3.7          6           1
 N asparagine          1.2          2           1
 P proline             7.3         12           2
 Q glutamine           5.5          9           1
 R arginine            4.9          8           1
 S serine              9.8         16           2
 T threonine           7.3         12           1
 V valine              7.3         12           2
 W tryptophan          2.4          4           2
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   KH homology domain containing 1 
LOC100129128          0.618   hypothetical protein LOC100129128 
OOEP                  0.034   oocyte expressed protein homolog 
DPPA5                 0.015   developmental pluripotency associated 5 
TRPA1                 0.009   ankyrin-like protein 1 
DLGAP4                0.009   disks large-associated protein 4 isoform a 
STT3A                 0.006   integral membrane protein 1 
BRPF1                 0.006   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.006   bromodomain and PHD finger-containing protein 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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