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Search of human proteins with 13899325
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]
(204 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens] 419 e-118
gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 419 e-118
gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 419 e-118
gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] 414 e-116
gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens] 414 e-116
gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens] 323 8e-89
gi|18201913 forkhead box N1 [Homo sapiens] 29 2.4
gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens] 29 3.2
gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens] 29 3.2
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 28 5.4
gi|113865921 hypothetical protein LOC441457 [Homo sapiens] 28 5.4
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 28 5.4
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 28 7.1
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 28 7.1
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 28 7.1
gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo sa... 28 7.1
gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo sa... 28 7.1
gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo sap... 28 7.1
gi|115495445 ankyrin repeat domain 30A [Homo sapiens] 27 9.2
gi|157743252 pecanex-like 3 [Homo sapiens] 27 9.2
>gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]
Length = 204
Score = 419 bits (1077), Expect = e-118
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ
Sbjct: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60
Query: 61 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 120
VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM
Sbjct: 61 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 120
Query: 121 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 180
RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL
Sbjct: 121 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 180
Query: 181 AGDEETECQSSPKHSSRERRRIQQ 204
AGDEETECQSSPKHSSRERRRIQQ
Sbjct: 181 AGDEETECQSSPKHSSRERRRIQQ 204
>gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 419 bits (1077), Expect = e-118
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ
Sbjct: 50 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 109
Query: 61 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 120
VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM
Sbjct: 110 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 169
Query: 121 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 180
RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL
Sbjct: 170 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 229
Query: 181 AGDEETECQSSPKHSSRERRRIQQ 204
AGDEETECQSSPKHSSRERRRIQQ
Sbjct: 230 AGDEETECQSSPKHSSRERRRIQQ 253
>gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 419 bits (1077), Expect = e-118
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ
Sbjct: 50 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 109
Query: 61 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 120
VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM
Sbjct: 110 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 169
Query: 121 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 180
RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL
Sbjct: 170 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 229
Query: 181 AGDEETECQSSPKHSSRERRRIQQ 204
AGDEETECQSSPKHSSRERRRIQQ
Sbjct: 230 AGDEETECQSSPKHSSRERRRIQQ 253
>gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens]
Length = 254
Score = 414 bits (1065), Expect = e-116
Identities = 204/205 (99%), Positives = 204/205 (99%), Gaps = 1/205 (0%)
Query: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ
Sbjct: 50 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 109
Query: 61 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 120
VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM
Sbjct: 110 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 169
Query: 121 RSHCEIAVFIDGPLAL-ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLS 179
RSHCEIAVFIDGPLAL ADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLS
Sbjct: 170 RSHCEIAVFIDGPLALAADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLS 229
Query: 180 LAGDEETECQSSPKHSSRERRRIQQ 204
LAGDEETECQSSPKHSSRERRRIQQ
Sbjct: 230 LAGDEETECQSSPKHSSRERRRIQQ 254
>gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]
Length = 255
Score = 414 bits (1064), Expect = e-116
Identities = 204/206 (99%), Positives = 204/206 (99%), Gaps = 2/206 (0%)
Query: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ
Sbjct: 50 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 109
Query: 61 V--PKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIIS 118
V PKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIIS
Sbjct: 110 VGVPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIIS 169
Query: 119 GMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPL 178
GMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPL
Sbjct: 170 GMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPL 229
Query: 179 SLAGDEETECQSSPKHSSRERRRIQQ 204
SLAGDEETECQSSPKHSSRERRRIQQ
Sbjct: 230 SLAGDEETECQSSPKHSSRERRRIQQ 255
>gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]
Length = 216
Score = 323 bits (827), Expect = 8e-89
Identities = 166/204 (81%), Positives = 166/204 (81%), Gaps = 37/204 (18%)
Query: 1 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ
Sbjct: 50 MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 109
Query: 61 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 120
VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM
Sbjct: 110 VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 169
Query: 121 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 180
RSHCEIAVFIDGPLALA KPLSL
Sbjct: 170 RSHCEIAVFIDGPLALAG-------------------------------------KPLSL 192
Query: 181 AGDEETECQSSPKHSSRERRRIQQ 204
AGDEETECQSSPKHSSRERRRIQQ
Sbjct: 193 AGDEETECQSSPKHSSRERRRIQQ 216
>gi|18201913 forkhead box N1 [Homo sapiens]
Length = 648
Score = 29.3 bits (64), Expect = 2.4
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Query: 97 SCQGRTHIHLAPGL--PGDP 114
SC G+T++HL+PGL PG P
Sbjct: 449 SCYGQTYLHLSPGLAPPGPP 468
>gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens]
Length = 869
Score = 28.9 bits (63), Expect = 3.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 84 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 124
F K W LL+ + + G T I L+P LPG+ I S + C
Sbjct: 321 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 362
>gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]
Length = 775
Score = 28.9 bits (63), Expect = 3.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 84 FWKHWPSILLKGLSCQ-GRTHIHLAPGLPGDPGIISGMRSHC 124
F K W LL+ + + G T I L+P LPG+ I S + C
Sbjct: 228 FGKQWQPTLLQAMQVEKGATGISLSPHLPGELAICSRSGAVC 269
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 28.1 bits (61), Expect = 5.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 71 TPQALPPMLVHGTFWKHWPSILLKGLSC-QGRTHIHLAPGLPGDPGIISG 119
TP + P L GT +P + + GL H H++PGL G ++ G
Sbjct: 1120 TPPSTDPGLTGGTV-SQFPPLYMPGLEYPNSAAHYHISPGLQGVGPVMGG 1168
>gi|113865921 hypothetical protein LOC441457 [Homo sapiens]
Length = 492
Score = 28.1 bits (61), Expect = 5.4
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 63 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 122
+ E+ P++ PQA +L P L G+ C + APG+P + G
Sbjct: 86 RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145
Query: 123 HCE 125
CE
Sbjct: 146 ACE 148
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 28.1 bits (61), Expect = 5.4
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 63 KLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRS 122
+ E+ P++ PQA +L P L G+ C + APG+P + G
Sbjct: 86 RTEVGPVKPPQAQTLILTQAPLVWQAPGTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQ 145
Query: 123 HCE 125
CE
Sbjct: 146 ACE 148
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 27.7 bits (60), Expect = 7.1
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 45 PSTGLL------IRANQGHSLQVPKLELMPLETPQALPPMLVH 81
PSTGLL I + + P L+ PL P+ +PP ++H
Sbjct: 823 PSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMH 865
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 27.7 bits (60), Expect = 7.1
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 45 PSTGLL------IRANQGHSLQVPKLELMPLETPQALPPMLVH 81
PSTGLL I + + P L+ PL P+ +PP ++H
Sbjct: 830 PSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMH 872
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 27.7 bits (60), Expect = 7.1
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 45 PSTGLL------IRANQGHSLQVPKLELMPLETPQALPPMLVH 81
PSTGLL I + + P L+ PL P+ +PP ++H
Sbjct: 845 PSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMH 887
>gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo
sapiens]
Length = 102
Score = 27.7 bits (60), Expect = 7.1
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 88 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 124
WP + G G + + G+PGD ++G+R HC
Sbjct: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
>gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo
sapiens]
Length = 114
Score = 27.7 bits (60), Expect = 7.1
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 88 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 124
WP + G G + + G+PGD ++G+R HC
Sbjct: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
>gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo
sapiens]
Length = 202
Score = 27.7 bits (60), Expect = 7.1
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 88 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 124
WP + G G + + G+PGD ++G+R HC
Sbjct: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
>gi|115495445 ankyrin repeat domain 30A [Homo sapiens]
Length = 1341
Score = 27.3 bits (59), Expect = 9.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 43 GDPSTGLLIRANQGHSLQVPK--LELMPLETPQALPP 77
G P L++AN G + +P LELM ++T +A PP
Sbjct: 663 GSPVKDGLLKANCGMKVSIPTKALELMDMQTFKAEPP 699
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 27.3 bits (59), Expect = 9.2
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 102 THIHLAPGLPGDPGIISGMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLL 161
TH+ PG P G + S E+ D + D + F + G PG + L+
Sbjct: 321 THLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLRSFDTVIGAGTPPGLAEPLLV 380
Query: 162 PKYFKEALQLRPT----------------RKPLSLAG----DEETE--CQSSPKHSSRER 199
+ K+ LRP+ R+PL G DE+T + SP S R +
Sbjct: 381 VRP-KDLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGGFFEDEDTSEGSELSPASSLRSQ 439
Query: 200 RR 201
RR
Sbjct: 440 RR 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,117,506
Number of Sequences: 37866
Number of extensions: 459639
Number of successful extensions: 1312
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 24
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.