Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCM2 Sequence: fasta or formatted (444aa) NCBI GI: 13899275
Description:

cerebral cavernous malformation 2 isoform 2

Referenced in:

Additional Brain Proteins
Cardiovascular System

Other entries for this name:
alt prot [465aa] cerebral cavernous malformation 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         33           2
 C cysteine            1.8          8           2
 D aspartate           7.0         31           2
 E glutamate           8.1         36           3
 F phenylalanine       3.4         15           1
 G glycine             6.1         27           2
 H histidine           3.6         16           2
 I isoleucine          5.6         25           2
 K lysine              5.2         23           2
 L leucine            10.4         46           3
 M methionine          0.9          4           1
 N asparagine          1.8          8           1
 P proline             4.1         18           1
 Q glutamine           3.2         14           2
 R arginine            5.6         25           2
 S serine             11.9         53           3
 T threonine           5.4         24           2
 V valine              5.9         26           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cerebral cavernous malformation 2 isoform 2 
CCM2                  0.977   cerebral cavernous malformation 2 isoform 1 
C20orf160             0.142   hypothetical protein LOC140706 
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isof...
MLH1                  0.007   MutL protein homolog 1 
MARCH7                0.006   axotrophin 
CHRNA3                0.006   cholinergic receptor, nicotinic, alpha 3 
CRKRS                 0.006   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.006   Cdc2-related kinase, arginine/serine-rich isoform 1...
BIVM                  0.006   basic, immunoglobulin-like variable motif containing...
BIRC6                 0.006   baculoviral IAP repeat-containing 6 
C11orf63              0.006   hypothetical protein LOC79864 isoform 2 
CIZ1                  0.005   CDKN1A interacting zinc finger protein 1 isoform 3 ...
TTLL6                 0.005   tubulin tyrosine ligase-like family, member 6 isofo...
CYP20A1               0.005   cytochrome P450, family 20, subfamily A, polypeptide...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press