Search of human proteins with 6912734

Search of human proteins with 6912734

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6912734 transportin 3 [Homo sapiens]
         (923 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6912734 transportin 3 [Homo sapiens]                              1855   0.0  
gi|224831257 importin 13 [Homo sapiens]                               200   6e-51
gi|8051636 tRNA exportin [Homo sapiens]                                37   0.11 
gi|24797086 importin 5 [Homo sapiens]                                  35   0.25 
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto...    35   0.25 
gi|4507943 exportin 1 [Homo sapiens]                                   35   0.42 
gi|38683840 CD96 antigen isoform 1 precursor [Homo sapiens]            33   0.94 
gi|5032141 CD96 antigen isoform 2 precursor [Homo sapiens]             33   0.94 
gi|12232469 required for meiotic nuclear division 5 homolog A [H...    33   0.94 
gi|33188443 microfilament and actin filament cross-linker protei...    32   2.1  
gi|33188445 microfilament and actin filament cross-linker protei...    32   2.1  

>gi|6912734 transportin 3 [Homo sapiens]
          Length = 923

 Score = 1855 bits (4805), Expect = 0.0
 Identities = 923/923 (100%), Positives = 923/923 (100%)

Query: 1   MEGAKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESC 60
           MEGAKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESC
Sbjct: 1   MEGAKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESC 60

Query: 61  YFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMP 120
           YFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMP
Sbjct: 61  YFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMP 120

Query: 121 SWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTV 180
           SWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTV
Sbjct: 121 SWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTV 180

Query: 181 VSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSN 240
           VSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSN
Sbjct: 181 VSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSN 240

Query: 241 LHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFT 300
           LHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFT
Sbjct: 241 LHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFT 300

Query: 301 ELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEV 360
           ELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEV
Sbjct: 301 ELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEV 360

Query: 361 IHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECF 420
           IHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECF
Sbjct: 361 IHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECF 420

Query: 421 AQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYT 480
           AQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYT
Sbjct: 421 AQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYT 480

Query: 481 SIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCRDHMAQHFNG 540
           SIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCRDHMAQHFNG
Sbjct: 481 SIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCRDHMAQHFNG 540

Query: 541 LLEIARSLDSFLLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEP 600
           LLEIARSLDSFLLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEP
Sbjct: 541 LLEIARSLDSFLLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEP 600

Query: 601 SNGISSDPTVFLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVE 660
           SNGISSDPTVFLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVE
Sbjct: 601 SNGISSDPTVFLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVE 660

Query: 661 RCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQG 720
           RCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQG
Sbjct: 661 RCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQG 720

Query: 721 LLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWA 780
           LLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWA
Sbjct: 721 LLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWA 780

Query: 781 IASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHT 840
           IASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHT
Sbjct: 781 IASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHT 840

Query: 841 CCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHK 900
           CCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHK
Sbjct: 841 CCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHK 900

Query: 901 QVTSAEECKQVCWALRDFTRLFR 923
           QVTSAEECKQVCWALRDFTRLFR
Sbjct: 901 QVTSAEECKQVCWALRDFTRLFR 923


>gi|224831257 importin 13 [Homo sapiens]
          Length = 963

 Score =  200 bits (508), Expect = 6e-51
 Identities = 224/970 (23%), Positives = 421/970 (43%), Gaps = 80/970 (8%)

Query: 3   GAKP----TLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVE 58
           GA P    T++ V +A+  LY+DP+   K  A  WL + Q S  AW  S QLLQ  +  E
Sbjct: 14  GAAPALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPE 73

Query: 59  SCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQ 118
             YF A  + +KI   + ++PTD + SL+  L T I      S +++T+L +A+A LAL 
Sbjct: 74  IQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALS 133

Query: 119 M--PSWKGCVQTLVEKYSNDVTSLP------FLLEILTVLPEEVHSRSLRIGANRRTEII 170
           M   +W   V  +V  +  + + +        LLE+LTVLPEE   ++ R+   R+  + 
Sbjct: 134 MMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEF--QTSRLPQYRKGLVR 191

Query: 171 EDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFE 230
             LA     V  LL   +++  +   +  KV +C  SW  L V   +  A   L+   F 
Sbjct: 192 TSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEA---LIQAAFA 248

Query: 231 VLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLD 290
            LQ     S L +++ + + +A+ +  + +  +   ++L   VL L+     AV   D++
Sbjct: 249 ALQ----DSELFDSSVEAIVNAI-SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDME 303

Query: 291 KVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHP-QYEVVE----ISFNF 345
                CRI   L E     ++         L  + +++ C G P  Y V E    ++  F
Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTF 363

Query: 346 WYRLGEHLYKTNDE---VIHGIFKAYIQRLLHALARHCQLEPDHE---GVPEETDDFGEF 399
           WY L + +     E   V   +++    +L+  L    Q   D E      +E + F  +
Sbjct: 364 WYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIY 423

Query: 400 RMRVSDLVKDLIFLIGSMECFAQLYS------TLKEGNPPWEVTEAVLFIMAAIAKSVDP 453
           R+ +SD +  +  ++G+ E  + LY       T  E    W+ TEA+L+   +IA+++D 
Sbjct: 424 RVDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETID- 481

Query: 454 ENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEK 513
            N   +V  L G++      +  +  T +  +G +SE +  +P  ++ VL  ++  L   
Sbjct: 482 VNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNP 541

Query: 514 PLASAAAKAIHNICSVCRDHMAQHFNGLLEIARS-LDSFLLSPEAAVGLLKGTALVLARL 572
            L+ ++   +  IC  C+  +  +   ++ +++  L   +      + L++    +L+ L
Sbjct: 542 ELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601

Query: 573 PLDKITECLSELCSVQVMALKKLLSQ--EPSN--------GISSDPTVFLDRLAVIFRHT 622
            +++I + L  L S  +  L+KL  +   PSN        G+ S+    LD       H 
Sbjct: 602 QVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHE 661

Query: 623 NPIVEN----GQTHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSA 678
            P +         +P   V+Q+++ ++ + L+K   D ++VE  C     +V+ +    A
Sbjct: 662 GPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA 721

Query: 679 ALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQ 738
            ++  L   +  +Y     +  L L   LV  +  E      +  +   +   T  L +Q
Sbjct: 722 PMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQ 781

Query: 739 QNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQV-VIPILQWAIASTTLDHRDANCSVMR 797
             G ++HPD VD   +L  + ++R P   L  ++ V  + Q A+ +          +   
Sbjct: 782 --GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCG 839

Query: 798 FLRDLI-HTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEV 856
           F  +L+   G             E +G+V+ + G+ L+  +L           +   A++
Sbjct: 840 FFTELLPRCG-----------EVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADI 888

Query: 857 LWEIMQVDRPTFCRWLENSLK--GLPKETTVGAVTVTHKQLTDFHKQVTSAEECK-QVCW 913
           L+ + +        W++ +L+  G P      +  ++ +Q   F +Q+      K +V  
Sbjct: 889 LFALNKHCFSLLSMWIKEALQPPGFP------SARLSPEQKDTFSQQILRERVNKRRVKE 942

Query: 914 ALRDFTRLFR 923
            +++FT L R
Sbjct: 943 MVKEFTLLCR 952


>gi|8051636 tRNA exportin [Homo sapiens]
          Length = 962

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 58/313 (18%), Positives = 129/313 (41%), Gaps = 31/313 (9%)

Query: 13  QAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIR--QDVESCYFAAQTMKMK 70
           QA+  L  + D   ++RA  +  +L+ S  AW++  + L  R   D    +F  Q ++ +
Sbjct: 4   QALLGLNPNADSDFRQRALAYFEQLKISPDAWQVCAEALAQRTYSDDHVKFFCFQVLEHQ 63

Query: 71  IQTSFYELPTDSHASLRDSLLTHIQ----NLKDLSPVIVTQLALAIADLAL--QMPSWKG 124
           ++  + EL T     +R++L++ +Q    N +     I  + A   A L +   +  W  
Sbjct: 64  VKYKYSELTTVQQQLIRETLISWLQAQMLNPQPEKTFIRNKAAQVFALLFVTEYLTKWPK 123

Query: 125 CVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGAN--RRTEIIEDL---AFYSST 179
               ++     +   +   L IL  +  E+  R +   +   RR  +I+D        + 
Sbjct: 124 FFFDILSVVDLNPRGVDLYLRILMAIDSELVDRDVVHTSEEARRNTLIKDTMREQCIPNL 183

Query: 180 VVSLLMTCVEKAGTDEKMLMKVFRCLG---SWFNLGVLDSNFMANNKLLALLFEVLQQDK 236
           V S          T+ ++  +    +G   SW +L ++ ++   N  L  +  EVL+++ 
Sbjct: 184 VESWYQILQNYQFTNSEVTCQCLEVVGAYVSWIDLSLIANDRFINMLLGHMSIEVLREE- 242

Query: 237 TSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVL-TLETAYHMAV-AREDLDKVLN 294
                        C  L+ + N   +    M+L + +   L++A   ++   ED+D +  
Sbjct: 243 ------------ACDCLFEVVNKGMDPVDKMKLVESLCQVLQSAGFFSIDQEEDVDFLAR 290

Query: 295 YCRIFTELCETFL 307
           + ++   + ++ +
Sbjct: 291 FSKLVNGMGQSLI 303


>gi|24797086 importin 5 [Homo sapiens]
          Length = 1115

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 14/150 (9%)

Query: 431 NPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSE 490
           NP W+   A L  ++AI +    +    L E++  V+   +  H  VRY +   VG+M+ 
Sbjct: 387 NPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAACNAVGQMA- 445

Query: 491 VVDRNP----QFLDPVLGYLMKGLCE---KPLASAAAKAIHNICSVC-RDHMAQHFNGLL 542
             D  P    +F + V+  L++ + +   + + + AA A+ N    C +  +  + + L+
Sbjct: 446 -TDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLV 504

Query: 543 EIARSLDSFLLSPEAAVGLLKGTALVLARL 572
           +   S+    L       + KGT LVL ++
Sbjct: 505 KHLHSIMVLKLQEL----IQKGTKLVLEQV 530


>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, 170kDa [Homo sapiens]
          Length = 1849

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 425  STLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIEL 484
            S L +G+ P +     L +    A S+D E +P LV+ L  +    +   TAVR+ +   
Sbjct: 1070 SLLDKGDSPAQELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARC 1129

Query: 485  VGEMSEVVDRNPQ--FLDPVLGYL 506
            VG MS++        FL+ VL +L
Sbjct: 1130 VGVMSKIATMETMNIFLEKVLPWL 1153


>gi|4507943 exportin 1 [Homo sapiens]
          Length = 1071

 Score = 34.7 bits (78), Expect = 0.42
 Identities = 74/369 (20%), Positives = 142/369 (38%), Gaps = 26/369 (7%)

Query: 5   KPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAA 64
           K  + L+   V  LYH  + + +  A   L  L+    AW   D +L+  Q++ + Y+  
Sbjct: 22  KLDINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGL 80

Query: 65  QTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLK------DLSPVIVTQLALAIADLALQ 118
           Q ++  I+T +  LP +    ++  ++  I          +   V + +L + +  +  Q
Sbjct: 81  QILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 140

Query: 119 M--PSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSL-RIGANRRTEIIEDLAF 175
                W   +  +V       +     + IL +L EEV   S  +I   +   + + +  
Sbjct: 141 EWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKSKHLKDSMCN 200

Query: 176 YSSTVVSLLMTCVEK---AGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVL 232
             S +  L    +E    A      L  + R L +W  LG +    + +  +   L   +
Sbjct: 201 EFSQIFQLCQFVMENSQNAPLVHATLETLLRFL-NWIPLGYIFETKLISTLIYKFLNVPM 259

Query: 233 QQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVA--REDLD 290
            ++ +   L E A     S     E   T   L M   + +L L T   +A +  ++D  
Sbjct: 260 FRNVSLKCLTEIAG---VSVSQYEEQFVTLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQ 316

Query: 291 KVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTL----ELLLICAGHPQYEVVEISFNFW 346
             +    +F  LC TFL++      + L    TL      +L+ +   + E+ +I   +W
Sbjct: 317 NFIQNLSLF--LC-TFLKEHDQLIEKRLNLRETLMEALHYMLLVSEVEETEIFKICLEYW 373

Query: 347 YRLGEHLYK 355
             L   LY+
Sbjct: 374 NHLAAELYR 382


>gi|38683840 CD96 antigen isoform 1 precursor [Homo sapiens]
          Length = 585

 Score = 33.5 bits (75), Expect = 0.94
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 386 HEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMA 445
           H   P ++D+   + M +S +  + ++ I S +    L S +   +PP  VTE+ L    
Sbjct: 341 HSNKPAQSDNLTIWCMALSPVPGNKVWNISSEKITFLLGSEISSTDPPLSVTESTLDTQP 400

Query: 446 AIAKSVDPENNP-----TLVEV 462
           + A SV P   P     TLV+V
Sbjct: 401 SPASSVSPARYPATSSVTLVDV 422


>gi|5032141 CD96 antigen isoform 2 precursor [Homo sapiens]
          Length = 569

 Score = 33.5 bits (75), Expect = 0.94
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 386 HEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMA 445
           H   P ++D+   + M +S +  + ++ I S +    L S +   +PP  VTE+ L    
Sbjct: 325 HSNKPAQSDNLTIWCMALSPVPGNKVWNISSEKITFLLGSEISSTDPPLSVTESTLDTQP 384

Query: 446 AIAKSVDPENNP-----TLVEV 462
           + A SV P   P     TLV+V
Sbjct: 385 SPASSVSPARYPATSSVTLVDV 406


>gi|12232469 required for meiotic nuclear division 5 homolog A [Homo
           sapiens]
          Length = 391

 Score = 33.5 bits (75), Expect = 0.94
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 707 LVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVT 766
           L++E  +E   RQG+LD+ + LC        Q++GL   P   +    L  R ++   V 
Sbjct: 117 LLNEVMVEHFFRQGMLDVAEELC--------QESGLSVDPSQKEPFVEL-NRILEALKVR 167

Query: 767 LLRSQVVIPILQWAIAS 783
           +LR     P L+WA+++
Sbjct: 168 VLR-----PALEWAVSN 179


>gi|33188443 microfilament and actin filament cross-linker protein
            isoform b [Homo sapiens]
          Length = 5938

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 18/106 (16%)

Query: 337  EVVEISFNFWYRLGEHL--YKTNDEVIH-----GIFKAYIQRLLHALARHCQLEPDHEGV 389
            +V+E++  FWY +   L   K   +++H     GI  + I++ + A           E +
Sbjct: 4545 DVLELAEKFWYDMAALLTTIKDTQDIVHDLESPGIDPSIIKQQVEAA----------ETI 4594

Query: 390  PEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWE 435
             EETD   E    +  L  DLIF  G  E   ++  ++ E N  WE
Sbjct: 4595 KEETDGLHEELEFIRILGADLIFACGETE-KPEVRKSIDEMNNAWE 4639


>gi|33188445 microfilament and actin filament cross-linker protein
            isoform a [Homo sapiens]
          Length = 5430

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 18/106 (16%)

Query: 337  EVVEISFNFWYRLGEHL--YKTNDEVIH-----GIFKAYIQRLLHALARHCQLEPDHEGV 389
            +V+E++  FWY +   L   K   +++H     GI  + I++ + A           E +
Sbjct: 4043 DVLELAEKFWYDMAALLTTIKDTQDIVHDLESPGIDPSIIKQQVEAA----------ETI 4092

Query: 390  PEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWE 435
             EETD   E    +  L  DLIF  G  E   ++  ++ E N  WE
Sbjct: 4093 KEETDGLHEELEFIRILGADLIFACGETE-KPEVRKSIDEMNNAWE 4137


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,576,046
Number of Sequences: 37866
Number of extensions: 1406267
Number of successful extensions: 3263
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3247
Number of HSP's gapped (non-prelim): 15
length of query: 923
length of database: 18,247,518
effective HSP length: 112
effective length of query: 811
effective length of database: 14,006,526
effective search space: 11359292586
effective search space used: 11359292586
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.