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Search of human proteins with 66880553
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66880553 Fanconi anemia, complementation group A isoform a
[Homo sapiens]
(1455 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66880553 Fanconi anemia, complementation group A isoform a [H... 2893 0.0
gi|66879666 Fanconi anemia, complementation group A isoform b [H... 587 e-167
gi|82546847 hypothetical protein LOC9907 [Homo sapiens] 33 1.5
gi|239743198 PREDICTED: hypothetical protein XP_002342772 [Homo ... 33 2.6
gi|239508872 PREDICTED: similar to Putative uncharacterized prot... 33 2.6
gi|208431815 protein tyrosine phosphatase, receptor type, K isof... 32 4.5
gi|18860902 protein tyrosine phosphatase, receptor type, K isofo... 32 4.5
gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo sapi... 32 4.5
gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo ... 32 4.5
gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo ... 32 4.5
gi|54859722 nucleoporin 160kDa [Homo sapiens] 32 4.5
gi|28173564 keratin 73 [Homo sapiens] 31 9.9
gi|40068047 cyclin M3 isoform 2 [Homo sapiens] 31 9.9
gi|40068049 cyclin M3 isoform 1 [Homo sapiens] 31 9.9
>gi|66880553 Fanconi anemia, complementation group A isoform a [Homo
sapiens]
Length = 1455
Score = 2893 bits (7499), Expect = 0.0
Identities = 1455/1455 (100%), Positives = 1455/1455 (100%)
Query: 1 MSDSWVPNSASGQDPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNAL 60
MSDSWVPNSASGQDPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNAL
Sbjct: 1 MSDSWVPNSASGQDPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNAL 60
Query: 61 LLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFIGSALQDQASRLGVPVGILSAGMVASS 120
LLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFIGSALQDQASRLGVPVGILSAGMVASS
Sbjct: 61 LLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFIGSALQDQASRLGVPVGILSAGMVASS 120
Query: 121 VGQICTAPAETSHPVLLTVEQRKKLSSLLEFAQYLLAHSMFSRLSFCQELWKIQSSLLLE 180
VGQICTAPAETSHPVLLTVEQRKKLSSLLEFAQYLLAHSMFSRLSFCQELWKIQSSLLLE
Sbjct: 121 VGQICTAPAETSHPVLLTVEQRKKLSSLLEFAQYLLAHSMFSRLSFCQELWKIQSSLLLE 180
Query: 181 AVWHLHVQGIVSLQELLESHPDMHAVGSWLFRNLCCLCEQMEASCQHADVARAMLSDFVQ 240
AVWHLHVQGIVSLQELLESHPDMHAVGSWLFRNLCCLCEQMEASCQHADVARAMLSDFVQ
Sbjct: 181 AVWHLHVQGIVSLQELLESHPDMHAVGSWLFRNLCCLCEQMEASCQHADVARAMLSDFVQ 240
Query: 241 MFVLRGFQKNSDLRRTVEPEKMPQVTVDVLQRMLIFALDALAAGVQEESSTHKIVRCWFG 300
MFVLRGFQKNSDLRRTVEPEKMPQVTVDVLQRMLIFALDALAAGVQEESSTHKIVRCWFG
Sbjct: 241 MFVLRGFQKNSDLRRTVEPEKMPQVTVDVLQRMLIFALDALAAGVQEESSTHKIVRCWFG 300
Query: 301 VFSGHTLGSVISTDPLKRFFSHTLTQILTHSPVLKASDAVQMQREWSFARTHPLLTSLYR 360
VFSGHTLGSVISTDPLKRFFSHTLTQILTHSPVLKASDAVQMQREWSFARTHPLLTSLYR
Sbjct: 301 VFSGHTLGSVISTDPLKRFFSHTLTQILTHSPVLKASDAVQMQREWSFARTHPLLTSLYR 360
Query: 361 RLFVMLSAEELVGHLQEVLETQEVHWQRVLSFVSALVVCFPEAQQLLEDWVARLMAQAFE 420
RLFVMLSAEELVGHLQEVLETQEVHWQRVLSFVSALVVCFPEAQQLLEDWVARLMAQAFE
Sbjct: 361 RLFVMLSAEELVGHLQEVLETQEVHWQRVLSFVSALVVCFPEAQQLLEDWVARLMAQAFE 420
Query: 421 SCQLDSMVTAFLVVRQAALEGPSAFLSYADWFKASFGSTRGYHGCSKKALVFLFTFLSEL 480
SCQLDSMVTAFLVVRQAALEGPSAFLSYADWFKASFGSTRGYHGCSKKALVFLFTFLSEL
Sbjct: 421 SCQLDSMVTAFLVVRQAALEGPSAFLSYADWFKASFGSTRGYHGCSKKALVFLFTFLSEL 480
Query: 481 VPFESPRYLQVHILHPPLVPGKYRSLLTDYISLAKTRLADLKVSIENMGLYEDLSSAGDI 540
VPFESPRYLQVHILHPPLVPGKYRSLLTDYISLAKTRLADLKVSIENMGLYEDLSSAGDI
Sbjct: 481 VPFESPRYLQVHILHPPLVPGKYRSLLTDYISLAKTRLADLKVSIENMGLYEDLSSAGDI 540
Query: 541 TEPHSQALQDVEKAIMVFEHTGNIPVTVMEASIFRRPYYVSHFLPALLTPRVLPKVPDSR 600
TEPHSQALQDVEKAIMVFEHTGNIPVTVMEASIFRRPYYVSHFLPALLTPRVLPKVPDSR
Sbjct: 541 TEPHSQALQDVEKAIMVFEHTGNIPVTVMEASIFRRPYYVSHFLPALLTPRVLPKVPDSR 600
Query: 601 VAFIESLKRADKIPPSLYSTYCQACSAAEEKPEDAALGVRAEPNSAEEPLGQLTAALGEL 660
VAFIESLKRADKIPPSLYSTYCQACSAAEEKPEDAALGVRAEPNSAEEPLGQLTAALGEL
Sbjct: 601 VAFIESLKRADKIPPSLYSTYCQACSAAEEKPEDAALGVRAEPNSAEEPLGQLTAALGEL 660
Query: 661 RASMTDPSQRDVISAQVAVISERLRAVLGHNEDDSSVEISKIQLSINTPRLEPREHMAVD 720
RASMTDPSQRDVISAQVAVISERLRAVLGHNEDDSSVEISKIQLSINTPRLEPREHMAVD
Sbjct: 661 RASMTDPSQRDVISAQVAVISERLRAVLGHNEDDSSVEISKIQLSINTPRLEPREHMAVD 720
Query: 721 LLLTSFCQNLMAASSVAPPERQGPWAALFVRTMCGRVLPAVLTRLCQLLRHQGPSLSAPH 780
LLLTSFCQNLMAASSVAPPERQGPWAALFVRTMCGRVLPAVLTRLCQLLRHQGPSLSAPH
Sbjct: 721 LLLTSFCQNLMAASSVAPPERQGPWAALFVRTMCGRVLPAVLTRLCQLLRHQGPSLSAPH 780
Query: 781 VLGLAALAVHLGESRSALPEVDVGPPAPGAGLPVPALFDSLLTCRTRDSLFFCLKFCTAA 840
VLGLAALAVHLGESRSALPEVDVGPPAPGAGLPVPALFDSLLTCRTRDSLFFCLKFCTAA
Sbjct: 781 VLGLAALAVHLGESRSALPEVDVGPPAPGAGLPVPALFDSLLTCRTRDSLFFCLKFCTAA 840
Query: 841 ISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFSEARQPLSEEDVASLSWRPLHLPS 900
ISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFSEARQPLSEEDVASLSWRPLHLPS
Sbjct: 841 ISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFSEARQPLSEEDVASLSWRPLHLPS 900
Query: 901 ADWQRAALSLWTHRTFREVLKEEDVHLTYQDWLHLELEIQPEADALSDTERQDFHQWAIH 960
ADWQRAALSLWTHRTFREVLKEEDVHLTYQDWLHLELEIQPEADALSDTERQDFHQWAIH
Sbjct: 901 ADWQRAALSLWTHRTFREVLKEEDVHLTYQDWLHLELEIQPEADALSDTERQDFHQWAIH 960
Query: 961 EHFLPESSASGGCDGDLQAACTILVNALMDFHQSSRSYDHSENSDLVFGGRTGNEDIISR 1020
EHFLPESSASGGCDGDLQAACTILVNALMDFHQSSRSYDHSENSDLVFGGRTGNEDIISR
Sbjct: 961 EHFLPESSASGGCDGDLQAACTILVNALMDFHQSSRSYDHSENSDLVFGGRTGNEDIISR 1020
Query: 1021 LQEMVADLELQQDLIVPLGHTPSQEHFLFEIFRRRLQALTSGWSVAASLQRQRELLMYKR 1080
LQEMVADLELQQDLIVPLGHTPSQEHFLFEIFRRRLQALTSGWSVAASLQRQRELLMYKR
Sbjct: 1021 LQEMVADLELQQDLIVPLGHTPSQEHFLFEIFRRRLQALTSGWSVAASLQRQRELLMYKR 1080
Query: 1081 ILLRLPSSVLCGSSFQAEQPITARCEQFFHLVNSEMRNFCSHGGALTQDITAHFFRGLLN 1140
ILLRLPSSVLCGSSFQAEQPITARCEQFFHLVNSEMRNFCSHGGALTQDITAHFFRGLLN
Sbjct: 1081 ILLRLPSSVLCGSSFQAEQPITARCEQFFHLVNSEMRNFCSHGGALTQDITAHFFRGLLN 1140
Query: 1141 ACLRSRDPSLMVDFILAKCQTKCPLILTSALVWWPSLEPVLLCRWRRHCQSPLPRELQKL 1200
ACLRSRDPSLMVDFILAKCQTKCPLILTSALVWWPSLEPVLLCRWRRHCQSPLPRELQKL
Sbjct: 1141 ACLRSRDPSLMVDFILAKCQTKCPLILTSALVWWPSLEPVLLCRWRRHCQSPLPRELQKL 1200
Query: 1201 QEGRQFASDFLSPEAASPAPNPDWLSAAALHFAIQQVREENIRKQLKKLDCEREELLVFL 1260
QEGRQFASDFLSPEAASPAPNPDWLSAAALHFAIQQVREENIRKQLKKLDCEREELLVFL
Sbjct: 1201 QEGRQFASDFLSPEAASPAPNPDWLSAAALHFAIQQVREENIRKQLKKLDCEREELLVFL 1260
Query: 1261 FFFSLMGLLSSHLTSNSTTDLPKAFHVCAAILECLEKRKISWLALFQLTESDLRLGRLLL 1320
FFFSLMGLLSSHLTSNSTTDLPKAFHVCAAILECLEKRKISWLALFQLTESDLRLGRLLL
Sbjct: 1261 FFFSLMGLLSSHLTSNSTTDLPKAFHVCAAILECLEKRKISWLALFQLTESDLRLGRLLL 1320
Query: 1321 RVAPDQHTRLLPFAFYSLLSYFHEDAAIREEAFLHVAVDMYLKLVQLFVAGDTSTVSPPA 1380
RVAPDQHTRLLPFAFYSLLSYFHEDAAIREEAFLHVAVDMYLKLVQLFVAGDTSTVSPPA
Sbjct: 1321 RVAPDQHTRLLPFAFYSLLSYFHEDAAIREEAFLHVAVDMYLKLVQLFVAGDTSTVSPPA 1380
Query: 1381 GRSLELKGQGNPVELITKARLFLLQLIPRCPKKSFSHVAELLADRGDCDPEVSAALQSRQ 1440
GRSLELKGQGNPVELITKARLFLLQLIPRCPKKSFSHVAELLADRGDCDPEVSAALQSRQ
Sbjct: 1381 GRSLELKGQGNPVELITKARLFLLQLIPRCPKKSFSHVAELLADRGDCDPEVSAALQSRQ 1440
Query: 1441 QAAPDADLSQEPHLF 1455
QAAPDADLSQEPHLF
Sbjct: 1441 QAAPDADLSQEPHLF 1455
>gi|66879666 Fanconi anemia, complementation group A isoform b [Homo
sapiens]
Length = 297
Score = 587 bits (1514), Expect = e-167
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MSDSWVPNSASGQDPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNAL 60
MSDSWVPNSASGQDPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNAL
Sbjct: 1 MSDSWVPNSASGQDPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNAL 60
Query: 61 LLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFIGSALQDQASRLGVPVGILSAGMVASS 120
LLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFIGSALQDQASRLGVPVGILSAGMVASS
Sbjct: 61 LLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFIGSALQDQASRLGVPVGILSAGMVASS 120
Query: 121 VGQICTAPAETSHPVLLTVEQRKKLSSLLEFAQYLLAHSMFSRLSFCQELWKIQSSLLLE 180
VGQICTAPAETSHPVLLTVEQRKKLSSLLEFAQYLLAHSMFSRLSFCQELWKIQSSLLLE
Sbjct: 121 VGQICTAPAETSHPVLLTVEQRKKLSSLLEFAQYLLAHSMFSRLSFCQELWKIQSSLLLE 180
Query: 181 AVWHLHVQGIVSLQELLESHPDMHAVGSWLFRNLCCLCEQMEASCQHADVARAMLSDFVQ 240
AVWHLHVQGIVSLQELLESHPDMHAVGSWLFRNLCCLCEQMEASCQHADVARAMLSDFVQ
Sbjct: 181 AVWHLHVQGIVSLQELLESHPDMHAVGSWLFRNLCCLCEQMEASCQHADVARAMLSDFVQ 240
Query: 241 MFVLRGFQKNSDLRRTVEPEKMPQVTVDVLQRMLIFALDALAAGVQEESSTHKIVRC 297
MFVLRGFQKNSDLRRTVEPEKMPQVTVDVLQRMLIFALDALAAGVQEESSTHKIVRC
Sbjct: 241 MFVLRGFQKNSDLRRTVEPEKMPQVTVDVLQRMLIFALDALAAGVQEESSTHKIVRC 297
>gi|82546847 hypothetical protein LOC9907 [Homo sapiens]
Length = 807
Score = 33.5 bits (75), Expect = 1.5
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 9/140 (6%)
Query: 398 VCFPEAQQLLEDWVARLMAQAFESCQLDSMVTAFLVVRQAALEGPSAFLSYADWFKASFG 457
V F Q+L+E R + + Q +V A LV+ + PS KA G
Sbjct: 296 VAFEYCQRLIEQSNRRALRKGDSDLQKACLVEAVLVLDVLCRQDPSFLYRSLSCLKALHG 355
Query: 458 STRGYHGCSKKALVFLFTFLS--ELVPFESPRYLQ-------VHILHPPLVPGKYRSLLT 508
RG + L FLS E +S Q V H P++ ++
Sbjct: 356 RVRGDPASVRVLLPLAHFFLSHGEAAAVDSEAVYQHLFTRIPVEQFHSPMLAFEFIQFCR 415
Query: 509 DYISLAKTRLADLKVSIENM 528
D + L L+ L++S N+
Sbjct: 416 DNLHLFSGHLSTLRLSFPNL 435
>gi|239743198 PREDICTED: hypothetical protein XP_002342772 [Homo
sapiens]
Length = 203
Score = 32.7 bits (73), Expect = 2.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 782 LGLAALAVHLGESRSALPEVDVGPPAPGAGLPVPA 816
+G L V L + S LPE VGP P GLP P+
Sbjct: 123 VGPDCLQVGLSKDSSCLPETSVGPSRPQVGLPRPS 157
>gi|239508872 PREDICTED: similar to Putative uncharacterized protein
FLJ46348 [Homo sapiens]
Length = 203
Score = 32.7 bits (73), Expect = 2.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 782 LGLAALAVHLGESRSALPEVDVGPPAPGAGLPVPA 816
+G L V L + S LPE VGP P GLP P+
Sbjct: 123 VGPDCLQVGLSKDSSCLPETSVGPSRPQVGLPRPS 157
>gi|208431815 protein tyrosine phosphatase, receptor type, K isoform
a [Homo sapiens]
Length = 1446
Score = 32.0 bits (71), Expect = 4.5
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 564 IPVTVMEASIFRRPYYVSHFLPALLTPRVLP-KVPDSRVAFIESLKRADKIPPSLYSTYC 622
+PVT A PYY + LP P P V D+R + P Y+ Y
Sbjct: 654 VPVTYQNAMSGGAPYYFAAELPPGNLPEPAPFTVGDNRT--YQGFWNPPLAPRKGYNIYF 711
Query: 623 QACSAAEEKPEDAALGVRAEPNSAEEP 649
QA S+ E++ + + + + + EEP
Sbjct: 712 QAMSSVEKETKTQCVRIATKAAATEEP 738
>gi|18860902 protein tyrosine phosphatase, receptor type, K isoform
b [Homo sapiens]
Length = 1440
Score = 32.0 bits (71), Expect = 4.5
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 564 IPVTVMEASIFRRPYYVSHFLPALLTPRVLP-KVPDSRVAFIESLKRADKIPPSLYSTYC 622
+PVT A PYY + LP P P V D+R + P Y+ Y
Sbjct: 654 VPVTYQNAMSGGAPYYFAAELPPGNLPEPAPFTVGDNRT--YQGFWNPPLAPRKGYNIYF 711
Query: 623 QACSAAEEKPEDAALGVRAEPNSAEEP 649
QA S+ E++ + + + + + EEP
Sbjct: 712 QAMSSVEKETKTQCVRIATKAAATEEP 738
>gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo
sapiens]
Length = 450
Score = 32.0 bits (71), Expect = 4.5
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 13/122 (10%)
Query: 717 MAVDLLLTSFCQNLMAASSVAPPERQGPWAALFVRTMCGRVLPAVLTRLCQLLRHQGPSL 776
+ V +LL L+ A S+ P E ++ TM LT L L + GPS+
Sbjct: 270 LGVTVLLALTVFQLLLAESMPPAESVPLIGKYYMATMTMVTFSTALTILIMNLHYCGPSV 329
Query: 777 SAPHVLGLAALAVHLGE-----------SRSALPEVDVGPPAP--GAGLPVPALFDSLLT 823
A L HL +S PE+ P +P GAG P +
Sbjct: 330 RPVPAWARALLLGHLARGLCVRERGEPCGQSRPPELSPSPQSPEGGAGPPAGPCHEPRCL 389
Query: 824 CR 825
CR
Sbjct: 390 CR 391
>gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo
sapiens]
Length = 2155
Score = 32.0 bits (71), Expect = 4.5
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 1012 TGNEDIISRLQEMVADLELQQDL--IVPLGHTPSQEHFLFEIFRRRLQALTSGWSVAASL 1069
T +E+I + + D + +D+ +V G T +Q FL R+RLQAL +GW+ +
Sbjct: 1089 TQHENIKNEIDNYEEDYQKMRDMGEMVTQGQTDAQYMFL----RQRLQALDTGWNELHKM 1144
Query: 1070 QRQRELLM 1077
R+ L+
Sbjct: 1145 WENRQNLL 1152
>gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo
sapiens]
Length = 2364
Score = 32.0 bits (71), Expect = 4.5
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 1012 TGNEDIISRLQEMVADLELQQDL--IVPLGHTPSQEHFLFEIFRRRLQALTSGWSVAASL 1069
T +E+I + + D + +D+ +V G T +Q FL R+RLQAL +GW+ +
Sbjct: 1102 TQHENIKNEIDNYEEDYQKMRDMGEMVTQGQTDAQYMFL----RQRLQALDTGWNELHKM 1157
Query: 1070 QRQRELLM 1077
R+ L+
Sbjct: 1158 WENRQNLL 1165
>gi|54859722 nucleoporin 160kDa [Homo sapiens]
Length = 1436
Score = 32.0 bits (71), Expect = 4.5
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 20/110 (18%)
Query: 1015 EDIISRLQE----------MVADLELQQDLIVPLGHTPSQEHFLFEIFRRRLQALTSGWS 1064
EDI S+LQE ++ +++ + ++ + G P+Q + + + T+G+
Sbjct: 656 EDICSKLQEIRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYI 715
Query: 1065 VAASLQRQ--------RELLMYKRILLRLPSSVLCGSS--FQAEQPITAR 1104
V + + R+LL+ +++L+RL +V+ G+ FQA+Q + R
Sbjct: 716 VCRGVHKIASTRFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHR 765
>gi|28173564 keratin 73 [Homo sapiens]
Length = 540
Score = 30.8 bits (68), Expect = 9.9
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 41 QKLKESAVRLLRSHQDLNALLLEVEGPLCKKLSLSKVIDCDSSEAYANH-SSSFIGSALQ 99
Q+ KE R+LR +Q+L ++ L ++ + L + +C S Y N S S I S++
Sbjct: 404 QQAKEELARMLREYQELLSVKLSLDIEIATYRKLLEGEECRMSGEYTNSVSISVINSSMA 463
Query: 100 DQASRLGVPVGILSAG 115
A G G +AG
Sbjct: 464 GMAG-TGAGFGFSNAG 478
>gi|40068047 cyclin M3 isoform 2 [Homo sapiens]
Length = 659
Score = 30.8 bits (68), Expect = 9.9
Identities = 63/234 (26%), Positives = 86/234 (36%), Gaps = 47/234 (20%)
Query: 631 KPEDAALGVRAEPN--SAEEPLGQLTAALGELRASMTDPSQRDVISAQVAVISERLRAVL 688
+P A L VR EP +AEE LG R + + +A+ ++ +
Sbjct: 111 RPHSALLAVRVEPGGGAAEEAAPPWALGLGAAGLLALAALARGLQLSALALAPAEVQVL- 169
Query: 689 GHNEDDSSVEISKIQLSINTPRLEPREHMA-----VDLLLTSFCQNLMA------ASSVA 737
E S E + + RLEP A LLL S Q +A A A
Sbjct: 170 --RESGSEAERAAAR------RLEPARRWAGCALGALLLLASLAQAALAVLLYRAAGQRA 221
Query: 738 PPERQGPWAALFVRTMCGRVLPAVLTRLCQLLRHQGPSLSAPHVLGLAALAVHLGESRSA 797
P G +F + G V+PA ++ L AP LGL+ LAV L A
Sbjct: 222 VPAVLGSAGLVF---LVGEVVPAAVSGRWTLAL-------APRALGLSRLAVLL-TLPVA 270
Query: 798 LP-----EVDVGPP---------APGAGLPVPALFDSLLTCRTRDSLFFCLKFC 837
LP E+ P A G G P L +L CRT + + L+ C
Sbjct: 271 LPVGQLLELAARPGRLRERVLELARGGGDPYSDLSKGVLRCRTVEDVLTPLEDC 324
>gi|40068049 cyclin M3 isoform 1 [Homo sapiens]
Length = 707
Score = 30.8 bits (68), Expect = 9.9
Identities = 63/234 (26%), Positives = 86/234 (36%), Gaps = 47/234 (20%)
Query: 631 KPEDAALGVRAEPN--SAEEPLGQLTAALGELRASMTDPSQRDVISAQVAVISERLRAVL 688
+P A L VR EP +AEE LG R + + +A+ ++ +
Sbjct: 111 RPHSALLAVRVEPGGGAAEEAAPPWALGLGAAGLLALAALARGLQLSALALAPAEVQVL- 169
Query: 689 GHNEDDSSVEISKIQLSINTPRLEPREHMA-----VDLLLTSFCQNLMA------ASSVA 737
E S E + + RLEP A LLL S Q +A A A
Sbjct: 170 --RESGSEAERAAAR------RLEPARRWAGCALGALLLLASLAQAALAVLLYRAAGQRA 221
Query: 738 PPERQGPWAALFVRTMCGRVLPAVLTRLCQLLRHQGPSLSAPHVLGLAALAVHLGESRSA 797
P G +F + G V+PA ++ L AP LGL+ LAV L A
Sbjct: 222 VPAVLGSAGLVF---LVGEVVPAAVSGRWTLAL-------APRALGLSRLAVLL-TLPVA 270
Query: 798 LP-----EVDVGPP---------APGAGLPVPALFDSLLTCRTRDSLFFCLKFC 837
LP E+ P A G G P L +L CRT + + L+ C
Sbjct: 271 LPVGQLLELAARPGRLRERVLELARGGGDPYSDLSKGVLRCRTVEDVLTPLEDC 324
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,491,730
Number of Sequences: 37866
Number of extensions: 2475876
Number of successful extensions: 6947
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6937
Number of HSP's gapped (non-prelim): 20
length of query: 1455
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1340
effective length of database: 13,892,928
effective search space: 18616523520
effective search space used: 18616523520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.