Search of human proteins with 66346733

Search of human proteins with 66346733

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66346733 chloride intracellular channel 2 [Homo sapiens]
         (247 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|66346733 chloride intracellular channel 2 [Homo sapiens]           509   e-144
gi|82617632 chloride intracellular channel 5 isoform b [Homo sap...   330   7e-91
gi|27894378 chloride intracellular channel 6 [Homo sapiens]           330   7e-91
gi|7330335 chloride intracellular channel 4 [Homo sapiens]            329   2e-90
gi|166197662 chloride intracellular channel 5 isoform a [Homo sa...   328   3e-90
gi|14251209 chloride intracellular channel 1 [Homo sapiens]           291   5e-79
gi|40288290 chloride intracellular channel 3 [Homo sapiens]           233   1e-61
gi|4758484 glutathione-S-transferase omega 1 [Homo sapiens]            39   0.005
gi|108773799 ganglioside-induced differentiation-associated prot...    31   0.87 
gi|108773797 ganglioside-induced differentiation-associated prot...    31   0.87 
gi|32455236 helicase (DNA) B [Homo sapiens]                            31   1.1  
gi|68163411 activated leukocyte cell adhesion molecule [Homo sap...    30   1.9  
gi|4504011 glutamate-cysteine ligase regulatory protein [Homo sa...    30   2.5  
gi|120433600 cyclic nucleotide gated channel alpha 3 isoform 2 [...    29   3.3  
gi|4502917 cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...    29   3.3  
gi|109150416 peroxidasin [Homo sapiens]                                28   5.6  
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]     28   9.6  
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]     28   9.6  
gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]     28   9.6  
gi|149274614 melanoma antigen family D, 4 [Homo sapiens]               28   9.6  
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]             28   9.6  

>gi|66346733 chloride intracellular channel 2 [Homo sapiens]
          Length = 247

 Score =  509 bits (1310), Expect = e-144
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MSGLRPGTQVDPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEE 60
           MSGLRPGTQVDPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEE
Sbjct: 1   MSGLRPGTQVDPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEE 60

Query: 61  LKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKF 120
           LKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKF
Sbjct: 61  LKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKF 120

Query: 121 SAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLT 180
           SAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLT
Sbjct: 121 SAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLT 180

Query: 181 LADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYA 240
           LADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYA
Sbjct: 181 LADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYA 240

Query: 241 NVAKQKS 247
           NVAKQKS
Sbjct: 241 NVAKQKS 247


>gi|82617632 chloride intracellular channel 5 isoform b [Homo
           sapiens]
          Length = 251

 Score =  330 bits (846), Expect = 7e-91
 Identities = 158/241 (65%), Positives = 195/241 (80%)

Query: 7   GTQVDPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAP 66
           G   DPEIELFVKAG DGESIGNCPF QRLFMILWLKGV FNVTTVD+ RKP +L +LAP
Sbjct: 9   GDDRDPEIELFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAP 68

Query: 67  GTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKN 126
           GT+PPFL +N ++KTD  KIEEFLE+TL P +YP L+ K++ES   G ++F+KFSAYIKN
Sbjct: 69  GTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHRESNTAGIDIFSKFSAYIKN 128

Query: 127 TQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSL 186
           T+++ N   E+ L K  K+LDDYLNTPL +EID ++  E   SRR FLDGD+LTLADC+L
Sbjct: 129 TKQQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADCNL 188

Query: 187 LPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYANVAKQK 246
           LPKL+++K+ AKKYR++DIPAE +G+WRYL NAYAR+EFT+TC  D EIE  YA+VAK+ 
Sbjct: 189 LPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYADVAKRL 248

Query: 247 S 247
           S
Sbjct: 249 S 249


>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
          Length = 686

 Score =  330 bits (846), Expect = 7e-91
 Identities = 157/233 (67%), Positives = 197/233 (84%)

Query: 13  EIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPF 72
           +I LFVKAG DGESIGNCPF QRLFMILWLKGV FNVTTVD+ RKP +L++LAPGTNPPF
Sbjct: 452 DITLFVKAGYDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPF 511

Query: 73  LVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKNTQKEAN 132
           + ++ E+KTD  KIEEFLE+ LAPPRYP L  ++ ES   G ++FAKFSA+IKNT+K+AN
Sbjct: 512 MTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDAN 571

Query: 133 KNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLNI 192
           +  EK+LLK  ++LD+YLN+PL DEID  S E+  VS R FLDGD+LTLADC+LLPKL+I
Sbjct: 572 EIHEKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDELTLADCNLLPKLHI 631

Query: 193 IKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYANVAKQ 245
           IK+ AKKYRDF+ P+E +G+WRYL+NAYAR+EFT+TCP D+EIE+ Y++VAK+
Sbjct: 632 IKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNTCPADQEIEHAYSDVAKR 684


>gi|7330335 chloride intracellular channel 4 [Homo sapiens]
          Length = 253

 Score =  329 bits (843), Expect = 2e-90
 Identities = 155/235 (65%), Positives = 196/235 (83%)

Query: 11  DPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNP 70
           +P IELFVKAGSDGESIGNCPF QRLFMILWLKGV F+VTTVD+ RKP +L++LAPGT+P
Sbjct: 16  EPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHP 75

Query: 71  PFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKNTQKE 130
           PF+ +N E+KTD  KIEEFLE+ L PP+Y  LSPK+ ES   G ++FAKFSAYIKN++ E
Sbjct: 76  PFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPE 135

Query: 131 ANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKL 190
           AN+  E+ LLK  ++LD+YLN+PL DEID +S E+   S R FLDG+++TLADC+LLPKL
Sbjct: 136 ANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKL 195

Query: 191 NIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYANVAKQ 245
           +I+KV AKKYR+FDIP E +G+WRYL NAY+R+EFT+TCP DKE+E  Y++VAK+
Sbjct: 196 HIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAYSDVAKR 250


>gi|166197662 chloride intracellular channel 5 isoform a [Homo
           sapiens]
          Length = 410

 Score =  328 bits (840), Expect = 3e-90
 Identities = 156/243 (64%), Positives = 196/243 (80%)

Query: 5   RPGTQVDPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDL 64
           + G  ++PEI LFVKAG DGESIGNCPF QRLFMILWLKGV FNVTTVD+ RKP +L +L
Sbjct: 166 KEGAHMNPEIYLFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNL 225

Query: 65  APGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYI 124
           APGT+PPFL +N ++KTD  KIEEFLE+TL P +YP L+ K++ES   G ++F+KFSAYI
Sbjct: 226 APGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHRESNTAGIDIFSKFSAYI 285

Query: 125 KNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADC 184
           KNT+++ N   E+ L K  K+LDDYLNTPL +EID ++  E   SRR FLDGD+LTLADC
Sbjct: 286 KNTKQQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADC 345

Query: 185 SLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYANVAK 244
           +LLPKL+++K+ AKKYR++DIPAE +G+WRYL NAYAR+EFT+TC  D EIE  YA+VAK
Sbjct: 346 NLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYADVAK 405

Query: 245 QKS 247
           + S
Sbjct: 406 RLS 408


>gi|14251209 chloride intracellular channel 1 [Homo sapiens]
          Length = 241

 Score =  291 bits (744), Expect = 5e-79
 Identities = 145/233 (62%), Positives = 171/233 (73%)

Query: 12  PEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPP 71
           P++ELFVKAGSDG  IGNCPF QRLFM+LWLKGV FNVTTVD  R+ E ++ L PG   P
Sbjct: 6   PQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLP 65

Query: 72  FLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKNTQKEA 131
           FL+Y  E+ TD  KIEEFLE  L PPRYP L+    ES   G ++FAKFSAYIKN+    
Sbjct: 66  FLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPAL 125

Query: 132 NKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLN 191
           N N EK LLK  K LD+YL +PL +E+D  SAE+  VS+R FLDG++LTLADC+LLPKL+
Sbjct: 126 NDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLH 185

Query: 192 IIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYANVAK 244
           I++V  KKYR F IP  F GV RYL NAYAREEF  TCP+D+EIE  Y  VAK
Sbjct: 186 IVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDEEIELAYEQVAK 238


>gi|40288290 chloride intracellular channel 3 [Homo sapiens]
          Length = 236

 Score =  233 bits (594), Expect = 1e-61
 Identities = 119/231 (51%), Positives = 156/231 (67%), Gaps = 6/231 (2%)

Query: 11  DPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNP 70
           + +++LFVKA  DGES+G+CP CQRLFM+L LKGV F +TTVD  R P+ LKD APG+  
Sbjct: 3   ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQL 62

Query: 71  PFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKNTQKE 130
           P L+Y+ + KTD ++IE+FLE+TL PP +P L+P+Y+ES   G ++F KFSA+IKN    
Sbjct: 63  PILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPA 122

Query: 131 ANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPV--SRRLFLDGDQLTLADCSLLP 188
            ++   + LL+   RLD YL  PL  E+    A EP +  SRR FLDGD+LTLADCSLLP
Sbjct: 123 QDEALYQQLLRALARLDSYLRAPLEHEL----AGEPQLRESRRRFLDGDRLTLADCSLLP 178

Query: 189 KLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTY 239
           KL+I+      +R   IPAE  GV RYL +A   +EF +TCP   EI   Y
Sbjct: 179 KLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAY 229


>gi|4758484 glutathione-S-transferase omega 1 [Homo sapiens]
          Length = 241

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 30  CPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLVYNK-ELKTDFIKIEE 88
           CPF +R  ++L  KG++  V  +++  KPE      P    P L  ++ +L  +     E
Sbjct: 32  CPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCE 91

Query: 89  FLEQTLAPPRYPHLSPKYKESFDVGCNLFAK----FSAYIKNTQKEANKNFEKSLLKEFK 144
           +L++     +     P  K    +   LF+K      ++I++  KE     ++   KEF 
Sbjct: 92  YLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFT 151

Query: 145 RLDDYL 150
           +L++ L
Sbjct: 152 KLEEVL 157


>gi|108773799 ganglioside-induced differentiation-associated protein
           1 isoform b [Homo sapiens]
          Length = 290

 Score = 31.2 bits (69), Expect = 0.87
 Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 58/182 (31%)

Query: 71  PFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSP-----------KYKESFDV------- 112
           P L++ + +  +  +I ++LEQT    R P L P            Y+E  D        
Sbjct: 10  PVLIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYT 69

Query: 113 -GCNLF--------------AKFSAYIKNTQK------EANKNFEKSLLKEFKRLDD--- 148
            GC L                +  + I NT+       E N + +++ + + KRL     
Sbjct: 70  HGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLL 129

Query: 149 ------YLNTPL------LDEIDPD----SAEEPPVSRRLFLDGDQLTLADCSLLPKLNI 192
                 YL   L      LD+++ +    + E P   ++ +L G+  TLAD SL   L+ 
Sbjct: 130 DHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHR 189

Query: 193 IK 194
           +K
Sbjct: 190 LK 191


>gi|108773797 ganglioside-induced differentiation-associated protein
           1 isoform a [Homo sapiens]
          Length = 358

 Score = 31.2 bits (69), Expect = 0.87
 Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 58/182 (31%)

Query: 71  PFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSP-----------KYKESFDV------- 112
           P L++ + +  +  +I ++LEQT    R P L P            Y+E  D        
Sbjct: 78  PVLIHGENIICEATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYT 137

Query: 113 -GCNLF--------------AKFSAYIKNTQK------EANKNFEKSLLKEFKRLDD--- 148
            GC L                +  + I NT+       E N + +++ + + KRL     
Sbjct: 138 HGCILHPELTVDSMIPAYATTRIRSQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLL 197

Query: 149 ------YLNTPL------LDEIDPD----SAEEPPVSRRLFLDGDQLTLADCSLLPKLNI 192
                 YL   L      LD+++ +    + E P   ++ +L G+  TLAD SL   L+ 
Sbjct: 198 DHDNVKYLKKILDELEKVLDQVETELQRRNEETPEEGQQPWLCGESFTLADVSLAVTLHR 257

Query: 193 IK 194
           +K
Sbjct: 258 LK 259


>gi|32455236 helicase (DNA) B [Homo sapiens]
          Length = 1087

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 89  FLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKNTQKEANKNFE 136
           FL+  ++PP   H+   + +  +V  +   KF  ++K      N NFE
Sbjct: 113 FLQSDMSPPNQKHICALFLKECEVSSDDVNKFLTWVKEVSNYKNLNFE 160


>gi|68163411 activated leukocyte cell adhesion molecule [Homo
           sapiens]
          Length = 583

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 104 PKYKESFDVGCNLFAKFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSA 163
           P+YK+      NL   ++  I N +    K F   L+ E    D+    P + ++    +
Sbjct: 84  PEYKDRL----NLSENYTLSISNARISDEKRFVCMLVTE----DNVFEAPTIVKVFKQPS 135

Query: 164 EEPPVSRRLFLDGDQL-TLADC 184
           +   VS+ LFL+ +QL  L DC
Sbjct: 136 KPEIVSKALFLETEQLKKLGDC 157


>gi|4504011 glutamate-cysteine ligase regulatory protein [Homo
           sapiens]
          Length = 274

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 124 IKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFL 174
           I+ T  E +      L++EF  + +   +  +++I+PD  EE  VS +LF+
Sbjct: 47  IQKTLNEWSSQINPDLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFI 97


>gi|120433600 cyclic nucleotide gated channel alpha 3 isoform 2
           [Homo sapiens]
          Length = 676

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 58  PEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHL 102
           P +L  L  GTN P + +N+ LK  F ++ EF ++T     YP++
Sbjct: 240 PTDLAYLKVGTNYPEVRFNRLLK--FSRLFEFFDRTETRTNYPNM 282


>gi|4502917 cyclic nucleotide gated channel alpha 3 isoform 1 [Homo
           sapiens]
          Length = 694

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 58  PEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHL 102
           P +L  L  GTN P + +N+ LK  F ++ EF ++T     YP++
Sbjct: 258 PTDLAYLKVGTNYPEVRFNRLLK--FSRLFEFFDRTETRTNYPNM 300


>gi|109150416 peroxidasin [Homo sapiens]
          Length = 1479

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 129 KEANKNFEKSLLKEFKRLDD-YLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLT 180
           K   ++ ++   K    L+  YL+   ++ +DPDS +  P   RLFL  +++T
Sbjct: 119 KNEIQSIDRQAFKGLASLEQLYLHFNQIETLDPDSFQHLPKLERLFLHNNRIT 171


>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
          Length = 739

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 14/163 (8%)

Query: 9   QVDPEIELFVKA---GSDGESIGNCPFCQRLFMILWLKGVKF---NVTTVDMTRKPEELK 62
           ++D E  L++      S    +G      RL ++L + GV F   N  +  +  +     
Sbjct: 472 EIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGVIFMNGNRASEAVLWEALRKM 531

Query: 63  DLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSA 122
            L PG   PFL   ++L TD    +++LE    P   P   P+Y+  + +          
Sbjct: 532 GLRPGVRHPFLGDLRKLITDDFVKQKYLEYKKIPNSNP---PEYEFLWGLRARHETSKMR 588

Query: 123 YIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEE 165
            ++   +  N++  +      + +DD   T     +D D AEE
Sbjct: 589 VLRFIAQNQNRDPREWKAHFLEAVDDAFKT-----MDVDMAEE 626


>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
          Length = 741

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 14/163 (8%)

Query: 9   QVDPEIELFVKA---GSDGESIGNCPFCQRLFMILWLKGVKF---NVTTVDMTRKPEELK 62
           ++D E  L++      S    +G      RL ++L + GV F   N  +  +  +     
Sbjct: 472 EIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGVIFMNGNRASEAVLWEALRKM 531

Query: 63  DLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSA 122
            L PG   PFL   ++L TD    +++LE    P   P   P+Y+  + +          
Sbjct: 532 GLRPGVRHPFLGDLRKLITDDFVKQKYLEYKKIPNSNP---PEYEFLWGLRARHETSKMR 588

Query: 123 YIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEE 165
            ++   +  N++  +      + +DD   T     +D D AEE
Sbjct: 589 VLRFIAQNQNRDPREWKAHFLEAVDDAFKT-----MDVDMAEE 626


>gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
          Length = 741

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 14/163 (8%)

Query: 9   QVDPEIELFVKA---GSDGESIGNCPFCQRLFMILWLKGVKF---NVTTVDMTRKPEELK 62
           ++D E  L++      S    +G      RL ++L + GV F   N  +  +  +     
Sbjct: 472 EIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGVIFMNGNRASEAVLWEALRKM 531

Query: 63  DLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSA 122
            L PG   PFL   ++L TD    +++LE    P   P   P+Y+  + +          
Sbjct: 532 GLRPGVRHPFLGDLRKLITDDFVKQKYLEYKKIPNSNP---PEYEFLWGLRARHETSKMR 588

Query: 123 YIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEE 165
            ++   +  N++  +      + +DD   T     +D D AEE
Sbjct: 589 VLRFIAQNQNRDPREWKAHFLEAVDDAFKT-----MDVDMAEE 626


>gi|149274614 melanoma antigen family D, 4 [Homo sapiens]
          Length = 739

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 14/163 (8%)

Query: 9   QVDPEIELFVKA---GSDGESIGNCPFCQRLFMILWLKGVKF---NVTTVDMTRKPEELK 62
           ++D E  L++      S    +G      RL ++L + GV F   N  +  +  +     
Sbjct: 472 EIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGVIFMNGNRASEAVLWEALRKM 531

Query: 63  DLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSA 122
            L PG   PFL   ++L TD    +++LE    P   P   P+Y+  + +          
Sbjct: 532 GLRPGVRHPFLGDLRKLITDDFVKQKYLEYKKIPNSNP---PEYEFLWGLRARHETSKMR 588

Query: 123 YIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEE 165
            ++   +  N++  +      + +DD   T     +D D AEE
Sbjct: 589 VLRFIAQNQNRDPREWKAHFLEAVDDAFKT-----MDVDMAEE 626


>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
          Length = 2817

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 21/89 (23%)

Query: 78  ELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKNTQKEANKNFEK 137
           EL+ +  K+EE +E     PR P+L P  ++                + ++   NK  E 
Sbjct: 588 ELEKEREKLEEKIE-----PREPNLEPMVEK----------------QESENSCNKEEEP 626

Query: 138 SLLKEFKRLDDYLNTPLLDEIDPDSAEEP 166
              ++     +   TP++ E +P+S  +P
Sbjct: 627 VFTRQDSNRSEKEATPVVHETEPESGSQP 655


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,230,390
Number of Sequences: 37866
Number of extensions: 451254
Number of successful extensions: 1105
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 21
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.