BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens] (445 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens] 897 0.0 gi|4503971 GDP dissociation inhibitor 1 [Homo sapiens] 802 0.0 gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens] 790 0.0 gi|53832014 choroideremia-like Rab escort protein 2 [Homo sapiens] 120 3e-27 gi|9966761 choroideremia isoform a [Homo sapiens] 110 3e-24 gi|224028271 choroideremia isoform b [Homo sapiens] 52 1e-06 gi|19923312 v-myc myelocytomatosis viral related oncogene, neuro... 32 1.5 gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 31 2.6 gi|68509940 Golli-mbp isoform 1 [Homo sapiens] 30 4.4 gi|68509928 myelin basic protein isoform 3 [Homo sapiens] 30 4.4 gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens] 30 5.8 gi|4557880 interferon gamma receptor 1 precursor [Homo sapiens] 29 9.9 gi|14251207 MOV10-like 1 [Homo sapiens] 29 9.9 >gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens] Length = 445 Score = 897 bits (2319), Expect = 0.0 Identities = 445/445 (100%), Positives = 445/445 (100%) Query: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60 Query: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120 Query: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180 Query: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 Query: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300 Query: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360 Query: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 420 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 420 Query: 421 YKRMTGSEFDFEEMKRKKNDIYGED 445 YKRMTGSEFDFEEMKRKKNDIYGED Sbjct: 421 YKRMTGSEFDFEEMKRKKNDIYGED 445 >gi|4503971 GDP dissociation inhibitor 1 [Homo sapiens] Length = 447 Score = 802 bits (2071), Expect = 0.0 Identities = 384/444 (86%), Positives = 420/444 (94%) Query: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60 M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF++ Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60 Query: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120 PPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKV EGSFVYKGGKIYKVP Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120 Query: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180 STE EALAS+LMG+FEKRRFRKFLV+VANFDE DP+TFEG+DP+ T+MRDVY+KFDLGQD Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180 Query: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 VIDFTGHALALYRTDDYLDQPC ET+NRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 Query: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300 LSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSY+ DRV K GQVIR+ Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300 Query: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMIS+AHNVAAQGKYIAI STTVET Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360 Query: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 420 +PEKE+ PALELLEPI+QKFV+ISDL P D G ESQ+F S +YDATTHFETTC+DIK+I Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420 Query: 421 YKRMTGSEFDFEEMKRKKNDIYGE 444 YKRM G+ FDFE MKRK+ND++GE Sbjct: 421 YKRMAGTAFDFENMKRKQNDVFGE 444 >gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens] Length = 400 Score = 790 bits (2040), Expect = 0.0 Identities = 400/445 (89%), Positives = 400/445 (89%), Gaps = 45/445 (10%) Query: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60 Query: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120 SPPESMGRGRDWNVDLIPKFLMANG Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANG----------------------------------- 85 Query: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180 LMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD Sbjct: 86 ----------LMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 135 Query: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR Sbjct: 136 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 195 Query: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV Sbjct: 196 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 255 Query: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK Sbjct: 256 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 315 Query: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 420 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI Sbjct: 316 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 375 Query: 421 YKRMTGSEFDFEEMKRKKNDIYGED 445 YKRMTGSEFDFEEMKRKKNDIYGED Sbjct: 376 YKRMTGSEFDFEEMKRKKNDIYGED 400 >gi|53832014 choroideremia-like Rab escort protein 2 [Homo sapiens] Length = 656 Score = 120 bits (300), Expect = 3e-27 Identities = 72/261 (27%), Positives = 136/261 (52%), Gaps = 13/261 (4%) Query: 69 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 128 GR +N+DL+ K L + G L+ +L+ ++V+RY++FK ++ GK+ +VP + A+ Sbjct: 226 GRRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFN 285 Query: 129 SSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHA 188 S + + EKR KFL + + E+ P ++ ++ + + K L ++ F H+ Sbjct: 286 SKELTMVEKRMLMKFLTFCLEY-EQHPDEYQAF--RQCSFSEYLKTKKLTPNLQHFVLHS 342 Query: 189 LALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGT 248 +A+ + +N K + + L R+G +P+L+PLYG GE+PQGF R+ A++GG Sbjct: 343 IAMTSESSC---TTIDGLNATKNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGI 399 Query: 249 YMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIRVIC 302 Y L ++ +V ++G+ + G+ K I + SY+ + + Q+ R + Sbjct: 400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVL 459 Query: 303 ILSHPIKNTN-DANSCQIIIP 322 I I T+ D + +I+P Sbjct: 460 ITDQSILKTDLDQQTSILIVP 480 Score = 51.2 bits (121), Expect = 2e-06 Identities = 22/44 (50%), Positives = 32/44 (72%) Query: 4 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 47 E+DV+++GTGL E IL+ S +G++VLH+D YYGG AS + Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFS 51 >gi|9966761 choroideremia isoform a [Homo sapiens] Length = 653 Score = 110 bits (275), Expect = 3e-24 Identities = 93/391 (23%), Positives = 172/391 (43%), Gaps = 40/391 (10%) Query: 23 MSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGSPPES-----------MGRGRD 71 + VNG +V N T ED+ + I E + GR Sbjct: 167 LEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTEQPKKNRITYSQIIKEGRR 226 Query: 72 WNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSL 131 +N+DL+ K L + G L+ +L+ + V+RY +FK ++ G++ +VP + A+ S Sbjct: 227 FNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQ 286 Query: 132 MGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALAL 191 + + EKR KFL + + EK P ++G + + T + K L ++ H++A+ Sbjct: 287 LTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAM 343 Query: 192 YRTDDYLDQPCYETINRIKL---YSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGT 248 + TI+ +K + L RYG +P+L+PLYG GELPQ F R+ A++GG Sbjct: 344 ------TSETASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 397 Query: 249 YMLNKPIEEIIV----QNGKVIGVKSEGEIARCKQLICDPSYVKDRV---EKVGQVIRVI 301 Y L ++ ++V + K I + G+ + + + SY + + + Q+ R + Sbjct: 398 YCLRHSVQCLVVDKESRKCKAI-IDQFGQRIISEHFLVEDSYFPENMCSRVQYRQISRAV 456 Query: 302 CILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKE 361 I + T+ I+ + + V + + +G Y+ ++ T Sbjct: 457 LITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGTYLVHLTCT----- 511 Query: 362 PEKEIRPALELLEPIEQK-FVSISDLLVPKD 391 + A E LE + QK FV +++ + + Sbjct: 512 ---SSKTAREDLESVVQKLFVPYTEMEIENE 539 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/44 (52%), Positives = 32/44 (72%) Query: 4 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 47 E+DVIV+GTGL E I++ S +G++VLH+D YYGG AS + Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51 >gi|224028271 choroideremia isoform b [Homo sapiens] Length = 110 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/44 (52%), Positives = 32/44 (72%) Query: 4 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 47 E+DVIV+GTGL E I++ S +G++VLH+D YYGG AS + Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51 >gi|19923312 v-myc myelocytomatosis viral related oncogene, neuroblastoma derived [Homo sapiens] Length = 464 Score = 31.6 bits (70), Expect = 1.5 Identities = 14/36 (38%), Positives = 22/36 (61%) Query: 34 DRNPYYGGESASITPLEDLYKRFKIPGSPPESMGRG 69 D + +Y G S P ED++K+F++ +PP S RG Sbjct: 31 DEDDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRG 66 >gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] Length = 980 Score = 30.8 bits (68), Expect = 2.6 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 12/95 (12%) Query: 247 GTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYV---------KDRVEKVGQV 297 G ++L P + ++ + K + +R ++ C P+ + +DR + +G+ Sbjct: 488 GLHLLKVPCSSLCAESSGAVETKLQAIFSRARR--CRPAVLLLTAVDLLGRDR-DGLGED 544 Query: 298 IRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332 RV+ +L H + N + NSC ++ +R D+ Sbjct: 545 ARVMAVLRHLLLNEDPLNSCPPLMVVATTSRAQDL 579 >gi|68509940 Golli-mbp isoform 1 [Homo sapiens] Length = 304 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%) Query: 26 NGKKVLHMDRNPYYG-------GESASITPLEDLYKRFKIPGSPPESMGRGR 70 +GK H R +YG G + P+ +K P +PP S G+GR Sbjct: 190 SGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGR 241 >gi|68509928 myelin basic protein isoform 3 [Homo sapiens] Length = 171 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%) Query: 26 NGKKVLHMDRNPYYG-------GESASITPLEDLYKRFKIPGSPPESMGRGR 70 +GK H R +YG G + P+ +K P +PP S G+GR Sbjct: 57 SGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGR 108 >gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens] Length = 610 Score = 29.6 bits (65), Expect = 5.8 Identities = 13/39 (33%), Positives = 25/39 (64%) Query: 3 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG 41 E+ DV+V+G+G + I++ GK+VL ++++ GG Sbjct: 66 EKLDVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGG 104 >gi|4557880 interferon gamma receptor 1 precursor [Homo sapiens] Length = 489 Score = 28.9 bits (63), Expect = 9.9 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Query: 411 ETTCD-DIKNIYKRMTGSEFDFEEMKRKKND 440 ETTC + N+Y RM GSE ++ + +K++D Sbjct: 164 ETTCYIRVYNVYVRMNGSEIQYKILTQKEDD 194 >gi|14251207 MOV10-like 1 [Homo sapiens] Length = 1211 Score = 28.9 bits (63), Expect = 9.9 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Query: 296 QVIRVICILSHPIKNTNDANSCQIIIP-QNQVN------RKSDIYVCMISFAHNVAAQGK 348 QV+R C+L+H I + A+ +I P + QV R D+ + Q + Sbjct: 1042 QVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQ-E 1100 Query: 349 YIAIVSTTVETKEPEKE 365 Y+ I+ +TV + E E Sbjct: 1101 YLVIIISTVRSNEDRFE 1117 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,305,296 Number of Sequences: 37866 Number of extensions: 718055 Number of successful extensions: 1454 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1440 Number of HSP's gapped (non-prelim): 16 length of query: 445 length of database: 18,247,518 effective HSP length: 105 effective length of query: 340 effective length of database: 14,271,588 effective search space: 4852339920 effective search space used: 4852339920 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.