Search of human proteins with 64464338

Search of human proteins with 64464338

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|64464338 coiled-coil-helix-coiled-coil-helix domain
containing 7 isoform d [Homo sapiens]
         (97 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|64464338 coiled-coil-helix-coiled-coil-helix domain containin...   207   2e-54
gi|58761514 coiled-coil-helix-coiled-coil-helix domain containin...   192   6e-50
gi|58761520 coiled-coil-helix-coiled-coil-helix domain containin...   182   4e-47
gi|58761516 coiled-coil-helix-coiled-coil-helix domain containin...    66   5e-12
gi|58761512 coiled-coil-helix-coiled-coil-helix domain containin...    51   2e-07
gi|58761518 coiled-coil-helix-coiled-coil-helix domain containin...    42   1e-04
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap...    27   3.5  
gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens]      27   3.5  
gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]       27   4.6  
gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]       27   4.6  
gi|55769561 zinc finger protein 21 isoform 2 [Homo sapiens]            27   4.6  
gi|55769559 zinc finger protein 21 isoform 1 [Homo sapiens]            27   4.6  
gi|47717134 CDC-like kinase 2 [Homo sapiens]                           26   7.8  
gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo sa...    26   7.8  
gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens]    26   7.8  
gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens]    26   7.8  

>gi|64464338 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform d [Homo sapiens]
          Length = 97

 Score =  207 bits (526), Expect = 2e-54
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MHQTRTGKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 60
          MHQTRTGKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR
Sbjct: 1  MHQTRTGKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 60

Query: 61 RFWNSIVMQRRKNGVKPFMPTAAERDEILRAVGNMPY 97
          RFWNSIVMQRRKNGVKPFMPTAAERDEILRAVGNMPY
Sbjct: 61 RFWNSIVMQRRKNGVKPFMPTAAERDEILRAVGNMPY 97


>gi|58761514 coiled-coil-helix-coiled-coil-helix domain containing 7
           isoform b [Homo sapiens]
          Length = 110

 Score =  192 bits (487), Expect = 6e-50
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 8   KKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIV 67
           KKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIV
Sbjct: 21  KKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIV 80

Query: 68  MQRRKNGVKPFMPTAAERDEILRAVGNMPY 97
           MQRRKNGVKPFMPTAAERDEILRAVGNMPY
Sbjct: 81  MQRRKNGVKPFMPTAAERDEILRAVGNMPY 110


>gi|58761520 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform f [Homo sapiens]
          Length = 85

 Score =  182 bits (463), Expect = 4e-47
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 13 MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 72
          MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK
Sbjct: 1  MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 60

Query: 73 NGVKPFMPTAAERDEILRAVGNMPY 97
          NGVKPFMPTAAERDEILRAVGNMPY
Sbjct: 61 NGVKPFMPTAAERDEILRAVGNMPY 85


>gi|58761516 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform c [Homo sapiens]
          Length = 68

 Score = 66.2 bits (160), Expect = 5e-12
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 1  MHQTRTGKKTVRMPSVTQRLRDPDINPCLS 30
          MHQTRTGKKTVRMPSVTQRLRDPDINPCLS
Sbjct: 1  MHQTRTGKKTVRMPSVTQRLRDPDINPCLS 30


>gi|58761512 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform a [Homo sapiens]
          Length = 81

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 23/23 (100%), Positives = 23/23 (100%)

Query: 8  KKTVRMPSVTQRLRDPDINPCLS 30
          KKTVRMPSVTQRLRDPDINPCLS
Sbjct: 21 KKTVRMPSVTQRLRDPDINPCLS 43


>gi|58761518 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform e [Homo sapiens]
          Length = 56

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)

Query: 13 MPSVTQRLRDPDINPCLS 30
          MPSVTQRLRDPDINPCLS
Sbjct: 1  MPSVTQRLRDPDINPCLS 18


>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
          sapiens]
          Length = 505

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 4  TRTGKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLR 55
          T  GKK V M S   +L   D N   S+  +   CL ++N  R    +YFLR
Sbjct: 32 TFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQR----SYFLR 79


>gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens]
          Length = 68

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 23 PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNC 59
          P  +PC  ++    +CL  N+Y   +C       + C
Sbjct: 2  PQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKC 38


>gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]
          Length = 965

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 11  VRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCST 51
           + + + +QR   P+  PC S+S +   C  +++  +E  S+
Sbjct: 518 IAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSS 558


>gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]
          Length = 977

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 11  VRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCST 51
           + + + +QR   P+  PC S+S +   C  +++  +E  S+
Sbjct: 530 IAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSS 570


>gi|55769561 zinc finger protein 21 isoform 2 [Homo sapiens]
          Length = 620

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 26  NPCLSESDASTRCLDENNYDRERCSTYF-------------LRYKNC----RRFWNSIVM 68
           N  +   D  +R   EN YD      +F               YK C    RR     + 
Sbjct: 146 NNMVDNLDLFSRSSAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKECGKGLRRKKGLSLH 205

Query: 69  QRRKNGVKPFMPTAAER 85
           QR KNG KPF  TA  +
Sbjct: 206 QRIKNGEKPFECTACRK 222


>gi|55769559 zinc finger protein 21 isoform 1 [Homo sapiens]
          Length = 639

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 26  NPCLSESDASTRCLDENNYDRERCSTYF-------------LRYKNC----RRFWNSIVM 68
           N  +   D  +R   EN YD      +F               YK C    RR     + 
Sbjct: 165 NNMVDNLDLFSRSSAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKECGKGLRRKKGLSLH 224

Query: 69  QRRKNGVKPFMPTAAER 85
           QR KNG KPF  TA  +
Sbjct: 225 QRIKNGEKPFECTACRK 241


>gi|47717134 CDC-like kinase 2 [Homo sapiens]
          Length = 498

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 15/51 (29%), Positives = 19/51 (37%)

Query: 2  HQTRTGKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTY 52
          H+ R  +        T+R R  D     S S    R  D   YDR  C +Y
Sbjct: 27 HKRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYDDRSSDRRVYDRRYCGSY 77


>gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo
          sapiens]
          Length = 90

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 25 INPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 60
          +  C S  +   +CL  NN++   C      Y  CR
Sbjct: 27 LGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62


>gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens]
          Length = 342

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 18  QRLRD------PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRR 71
           Q LRD      P+++  L ++    R L    +D +R     + Y +CRR W  +    +
Sbjct: 59  QALRDMVRKEYPNLSTSLDDAFL-LRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117

Query: 72  KNGVK 76
            + +K
Sbjct: 118 PSALK 122


>gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens]
          Length = 342

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 18  QRLRD------PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRR 71
           Q LRD      P+++  L ++    R L    +D +R     + Y +CRR W  +    +
Sbjct: 59  QALRDMVRKEYPNLSTSLDDAFL-LRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117

Query: 72  KNGVK 76
            + +K
Sbjct: 118 PSALK 122


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,641,529
Number of Sequences: 37866
Number of extensions: 132928
Number of successful extensions: 357
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 16
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.