Search of human proteins with 63055040

Search of human proteins with 63055040

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|63055040 PPPDE peptidase domain containing 2 [Homo sapiens]
         (168 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|63055040 PPPDE peptidase domain containing 2 [Homo sapiens]        343   3e-95
gi|38708309 PPPDE peptidase domain containing 1 [Homo sapiens]         57   6e-09
gi|239757398 PREDICTED: similar to CGI-146 protein [Homo sapiens]      45   4e-05
gi|239751890 PREDICTED: hypothetical protein XP_002348023 [Homo ...    45   4e-05
gi|239746380 PREDICTED: hypothetical protein XP_002343701 [Homo ...    45   4e-05
gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic poly...    29   1.7  
gi|222418639 melanoma antigen family B, 2 [Homo sapiens]               28   2.8  
gi|28558977 mediator complex subunit 26 [Homo sapiens]                 28   3.7  
gi|106879204 exocyst complex component 3-like [Homo sapiens]           28   4.8  
gi|24430215 interleukin 10 receptor, beta precursor [Homo sapiens]     27   8.3  

>gi|63055040 PPPDE peptidase domain containing 2 [Homo sapiens]
          Length = 168

 Score =  343 bits (881), Expect = 3e-95
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MEPPNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSCPP 60
           MEPPNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSCPP
Sbjct: 1   MEPPNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSCPP 60

Query: 61  GGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLT 120
           GGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLT
Sbjct: 61  GGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLT 120

Query: 121 GRKIPSYITDLPSEVLSTPFGQALRPLLDSIQIQPPGGSSVGRPNGQS 168
           GRKIPSYITDLPSEVLSTPFGQALRPLLDSIQIQPPGGSSVGRPNGQS
Sbjct: 121 GRKIPSYITDLPSEVLSTPFGQALRPLLDSIQIQPPGGSSVGRPNGQS 168


>gi|38708309 PPPDE peptidase domain containing 1 [Homo sapiens]
          Length = 194

 Score = 57.4 bits (137), Expect = 6e-09
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 10/121 (8%)

Query: 35  GIWHTSIVVHKDEFFFGS-----GGISSCPPGGTL-LGPP---DSVVDVGSTEVTEEIFL 85
           G++H+ I V+  EF +G       GI    PG    LG        V +GST+  E+   
Sbjct: 27  GVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIE 86

Query: 86  EYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALR 145
           + +  LG+  ++G AY+L   NCN FS+ +++ L G++IP +I  L       PF Q+  
Sbjct: 87  KIVEELGKE-YKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCL 145

Query: 146 P 146
           P
Sbjct: 146 P 146


>gi|239757398 PREDICTED: similar to CGI-146 protein [Homo sapiens]
          Length = 118

 Score = 44.7 bits (104), Expect = 4e-05
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 35  GIWHTSIVVHKDEFFFGS-----GGISSCPPGGTL-LGPPDSVVDV--GSTEVTEEIFLE 86
           G++H+ I V+  EF +G       GI    PG    LG P    +V  GST+  E+   +
Sbjct: 27  GVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNASELGEPFKFKEVVLGSTDFLEDDIEK 86

Query: 87  YLSSLGESLFRGEAYNLFEHNCNTFSNEVAQ 117
            +  LG+  ++G  Y+L   NCN FS+ +++
Sbjct: 87  IVEELGKE-YKGNVYHLMHKNCNHFSSALSE 116


>gi|239751890 PREDICTED: hypothetical protein XP_002348023 [Homo
           sapiens]
          Length = 118

 Score = 44.7 bits (104), Expect = 4e-05
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 35  GIWHTSIVVHKDEFFFGS-----GGISSCPPGGTL-LGPPDSVVDV--GSTEVTEEIFLE 86
           G++H+ I V+  EF +G       GI    PG    LG P    +V  GST+  E+   +
Sbjct: 27  GVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNASELGEPFKFKEVVLGSTDFLEDDIEK 86

Query: 87  YLSSLGESLFRGEAYNLFEHNCNTFSNEVAQ 117
            +  LG+  ++G  Y+L   NCN FS+ +++
Sbjct: 87  IVEELGKE-YKGNVYHLMHKNCNHFSSALSE 116


>gi|239746380 PREDICTED: hypothetical protein XP_002343701 [Homo
           sapiens]
          Length = 118

 Score = 44.7 bits (104), Expect = 4e-05
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 35  GIWHTSIVVHKDEFFFGS-----GGISSCPPGGTL-LGPPDSVVDV--GSTEVTEEIFLE 86
           G++H+ I V+  EF +G       GI    PG    LG P    +V  GST+  E+   +
Sbjct: 27  GVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNASELGEPFKFKEVVLGSTDFLEDDIEK 86

Query: 87  YLSSLGESLFRGEAYNLFEHNCNTFSNEVAQ 117
            +  LG+  ++G  Y+L   NCN FS+ +++
Sbjct: 87  IVEELGKE-YKGNVYHLMHKNCNHFSSALSE 116


>gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3F isoform b [Homo sapiens]
          Length = 101

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 123 KIPSYITDLPSEVLSTPFGQALRPLLDSIQIQPPGGSSVGRPNGQ 167
           ++P      P +VLS+PFGQ   P   + Q+Q P   + GR  G+
Sbjct: 57  QVPRSFIRAPFQVLSSPFGQCAPP-HGTAQVQWPPQLTAGREQGR 100


>gi|222418639 melanoma antigen family B, 2 [Homo sapiens]
          Length = 319

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 60  PGGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQ-- 117
           P   LL P   V+ +     TEE   E+L+ LG  ++ GE +++F       + ++ Q  
Sbjct: 199 PRRKLLMPLLGVIFLNGNSATEEEIWEFLNMLG--VYDGEEHSVFGEPWKLITKDLVQEK 256

Query: 118 FLTGRKIPS 126
           +L  +++PS
Sbjct: 257 YLEYKQVPS 265


>gi|28558977 mediator complex subunit 26 [Homo sapiens]
          Length = 600

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 52  SGGISSCPPGGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNL 103
           +GG  +C P     GPP S+ D+ S    + +  + L  LG    RG+  +L
Sbjct: 105 NGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDL 156


>gi|106879204 exocyst complex component 3-like [Homo sapiens]
          Length = 746

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 3   PPNLYPVKLYVYDLSKGLARRLSPIMLGKQLE-----GIWHTSIVVHKDEFFFGS 52
           PP    V+L+ + L  GL R L  ++ G +LE      + H ++ V+  +   GS
Sbjct: 299 PPQYNVVQLWAHTLHSGLRRSLQNLLAGPELEAADAFALLHWALHVYLGQEMMGS 353


>gi|24430215 interleukin 10 receptor, beta precursor [Homo sapiens]
          Length = 325

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 55  ISSCPPGGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSN 113
           I+ CP   T++GPP   V+V +  +        + +  E+      YN + +N   + N
Sbjct: 103 ITFCPVDDTIIGPPGMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKN 161


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,837,547
Number of Sequences: 37866
Number of extensions: 361967
Number of successful extensions: 723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 10
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.