Search of human proteins with 13569870

Search of human proteins with 13569870

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13569870 ubiquitin related modifier 1 homolog isoform a
[Homo sapiens]
         (101 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13569870 ubiquitin related modifier 1 homolog isoform a [Homo...   207   1e-54
gi|209693464 ubiquitin related modifier 1 homolog isoform b [Hom...   163   2e-41
gi|4502171 adenine phosphoribosyltransferase isoform a [Homo sap...    28   1.2  
gi|19718746 oxysterol-binding protein-like 1A isoform A [Homo sa...    28   1.2  
gi|19718741 oxysterol-binding protein-like 1A isoform B [Homo sa...    28   1.2  
gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens]              28   2.0  
gi|155969718 mitochondrial coiled-coil domain 1 [Homo sapiens]         26   5.9  
gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens]           26   7.7  
gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens]           26   7.7  
gi|21264341 spermine synthase [Homo sapiens]                           26   7.7  

>gi|13569870 ubiquitin related modifier 1 homolog isoform a [Homo
           sapiens]
          Length = 101

 Score =  207 bits (527), Expect = 1e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60
           MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
Sbjct: 1   MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60

Query: 61  DSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101
           DSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG
Sbjct: 61  DSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101


>gi|209693464 ubiquitin related modifier 1 homolog isoform b [Homo
          sapiens]
          Length = 146

 Score =  163 bits (413), Expect = 2e-41
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60
          MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
Sbjct: 1  MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60

Query: 61 DSVRPGILVLINDADWELL 79
          DSVRPGILVLINDADWELL
Sbjct: 61 DSVRPGILVLINDADWELL 79


>gi|4502171 adenine phosphoribosyltransferase isoform a [Homo
           sapiens]
          Length = 180

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 10/68 (14%)

Query: 43  IWIKKNLLKERPELFIQGDSVRPGILVLIND----------ADWELLGELDYQLQDQDSV 92
           +W   +L   + EL IQ D++ PG  V++ D          A  ELLG L  ++ +  S+
Sbjct: 97  LWASYSLEYGKAELEIQKDALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSL 156

Query: 93  LFISTLHG 100
           + +++L G
Sbjct: 157 VELTSLKG 164


>gi|19718746 oxysterol-binding protein-like 1A isoform A [Homo
          sapiens]
          Length = 437

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 5  LSVEVEFGGGAELLFDGIKKHRVTLP 30
          +S E + GGG + L +GIKKHR +LP
Sbjct: 1  MSEEKDCGGG-DALSNGIKKHRTSLP 25


>gi|19718741 oxysterol-binding protein-like 1A isoform B [Homo
           sapiens]
          Length = 950

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 5   LSVEVEFGGGAELLFDGIKKHRVTLP 30
           +S E + GGG + L +GIKKHR +LP
Sbjct: 514 MSEEKDCGGG-DALSNGIKKHRTSLP 538


>gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens]
          Length = 2694

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 49  LLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSVLFIS 96
           LLKE   + ++GD    GIL + N     LL +   +LQ  D  +FIS
Sbjct: 420 LLKELMNMAVEGDHTSVGILGISNVQPLLLLIQWLPELQSHDLQIFIS 467


>gi|155969718 mitochondrial coiled-coil domain 1 [Homo sapiens]
          Length = 119

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 10  EFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKER 53
           E     ELL   ++ ++  L GQE  W+ + L++ I+K  LKE+
Sbjct: 66  ELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQK--LKEQ 107


>gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens]
          Length = 578

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2   AAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQGD 61
           AAP   +    GG +LL        +  P ++ P D RNL I +  NL   R   F  GD
Sbjct: 220 AAPCPFQCYCFGGPKLLLRCASGAELRQPPRDVPPDARNLTI-VGANLTVLRAAAFAGGD 278


>gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens]
          Length = 578

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2   AAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQGD 61
           AAP   +    GG +LL        +  P ++ P D RNL I +  NL   R   F  GD
Sbjct: 220 AAPCPFQCYCFGGPKLLLRCASGAELRQPPRDVPPDARNLTI-VGANLTVLRAAAFAGGD 278


>gi|21264341 spermine synthase [Homo sapiens]
          Length = 366

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 28  TLPGQEEPWDIRNLLIWIKKNLLKERPELFIQGDSV 63
           T P ++  W+   L++ +   +LK+  + F QG+ V
Sbjct: 284 TSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV 319


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.144    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,065,943
Number of Sequences: 37866
Number of extensions: 160441
Number of successful extensions: 267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 10
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.