Guide to the Human Genome
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Name: SMS Sequence: fasta or formatted (366aa) NCBI GI: 21264341
Description:

spermine synthase

Referenced in:

Urea Cycle, Nitric Oxide, and Polyamines

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         18           3
 C cysteine            2.2          8           1
 D aspartate           8.2         30           1
 E glutamate           7.4         27           2
 F phenylalanine       2.5          9           1
 G glycine             8.2         30           3
 H histidine           1.4          5           1
 I isoleucine          6.6         24           1
 K lysine              7.4         27           2
 L leucine            10.9         40           2
 M methionine          2.7         10           1
 N asparagine          3.0         11           1
 P proline             3.3         12           2
 Q glutamine           3.8         14           1
 R arginine            3.8         14           1
 S serine              5.5         20           1
 T threonine           4.6         17           1
 V valine              7.1         26           2
 W tryptophan          1.4          5           1
 Y tyrosine            5.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spermine synthase 
SRM                   0.061   spermidine synthase 
EVPL                  0.014   envoplakin 
PITPNM1               0.007   phosphatidylinositol transfer protein, membrane-ass...
PITPNM1               0.007   phosphatidylinositol transfer protein, membrane-ass...
KIAA0368              0.007   KIAA0368 protein 
GSDMB                 0.006   gasdermin-like isoform 1 
GSDMB                 0.006   gasdermin-like isoform 2 
TXNRD2                0.006   thioredoxin reductase 2 precursor 
FLNC                  0.006   gamma filamin isoform b 
FLNC                  0.006   gamma filamin isoform a 
TXNRD1                0.006   thioredoxin reductase 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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