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Search of human proteins with 13443000
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13443000 F-box only protein 22 isoform b [Homo sapiens]
(276 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13443000 F-box only protein 22 isoform b [Homo sapiens] 556 e-159
gi|22547149 F-box only protein 22 isoform a [Homo sapiens] 532 e-151
gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Homo ... 35 0.093
gi|42558258 F-box protein 33 [Homo sapiens] 34 0.12
gi|4502477 beta-transducin repeat containing protein isoform 2 [... 30 3.0
gi|16117783 beta-transducin repeat containing protein isoform 1 ... 30 3.0
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 29 3.9
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 29 3.9
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap... 29 5.1
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap... 29 5.1
gi|48928050 F-box and WD repeat domain containing 11 isoform C [... 28 6.7
gi|157743284 ankyrin repeat domain 52 [Homo sapiens] 28 6.7
gi|48928048 F-box and WD repeat domain containing 11 isoform A [... 28 6.7
gi|48928046 F-box and WD repeat domain containing 11 isoform B [... 28 6.7
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens] 28 8.7
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens] 28 8.7
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens] 28 8.7
>gi|13443000 F-box only protein 22 isoform b [Homo sapiens]
Length = 276
Score = 556 bits (1432), Expect = e-159
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL 60
MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
Sbjct: 1 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL 60
Query: 61 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH 120
RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
Sbjct: 61 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH 120
Query: 121 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP 180
KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
Sbjct: 121 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP 180
Query: 181 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV 240
QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
Sbjct: 181 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV 240
Query: 241 STFSDMNIILAGGQVDNLSSLTSEKYVLCASDFVCE 276
STFSDMNIILAGGQVDNLSSLTSEKYVLCASDFVCE
Sbjct: 241 STFSDMNIILAGGQVDNLSSLTSEKYVLCASDFVCE 276
>gi|22547149 F-box only protein 22 isoform a [Homo sapiens]
Length = 403
Score = 532 bits (1370), Expect = e-151
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL 60
MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
Sbjct: 1 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL 60
Query: 61 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH 120
RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
Sbjct: 61 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH 120
Query: 121 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP 180
KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
Sbjct: 121 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP 180
Query: 181 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV 240
QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
Sbjct: 181 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV 240
Query: 241 STFSDMNIILAGGQVDNLSSLTSEK 265
STFSDMNIILAGGQVDNLSSLTSEK
Sbjct: 241 STFSDMNIILAGGQVDNLSSLTSEK 265
>gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Homo
sapiens]
Length = 463
Score = 34.7 bits (78), Expect = 0.093
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 88 VAEELENVRILPHTVLYMADSETFISLEECRGHKRARKRTSMETALALEKLFPKQCQVLG 147
V E +++RI+ + M E + + KRA +TSME+ + KL+ + QV
Sbjct: 334 VEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPP 393
Query: 148 IVTPGIVVTPMG--------SGSNRPQEIEIGESGFALL 178
T + P G GS+RP +I GFA L
Sbjct: 394 GATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHL 432
>gi|42558258 F-box protein 33 [Homo sapiens]
Length = 555
Score = 34.3 bits (77), Expect = 0.12
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 7 CGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECV 56
CG+ G++ P +E++ + +FLPA LR + C WREC+
Sbjct: 62 CGQAAGAASLP---------SELIVHIFSFLPAPDRLRASASCSHWRECL 102
>gi|4502477 beta-transducin repeat containing protein isoform 2
[Homo sapiens]
Length = 569
Score = 29.6 bits (65), Expect = 3.0
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 26 LAEVVERVLTFLPAKALLRVACVCR----------LWRECVRRVLRT 62
L + E +L++L AK+L VC+ LW++ + R++RT
Sbjct: 153 LDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT 199
>gi|16117783 beta-transducin repeat containing protein isoform 1
[Homo sapiens]
Length = 605
Score = 29.6 bits (65), Expect = 3.0
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 26 LAEVVERVLTFLPAKALLRVACVCR----------LWRECVRRVLRT 62
L + E +L++L AK+L VC+ LW++ + R++RT
Sbjct: 189 LDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT 235
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 29.3 bits (64), Expect = 3.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 220 VLVFGYNCCKVGASNYLQQVVSTFSDMNIILAGGQVDNLSSLTSEKYVLCASDF 273
+L CC+ G + ++++ F D NI+L G+V + S S+K L A+ +
Sbjct: 1357 ILTESVPCCEDGLT-CSRKIIVAFQDQNIVLQDGKVTAVKSTESKKCELNANAY 1409
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 29.3 bits (64), Expect = 3.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 220 VLVFGYNCCKVGASNYLQQVVSTFSDMNIILAGGQVDNLSSLTSEKYVLCASDF 273
+L CC+ G + ++++ F D NI+L G+V + S S+K L A+ +
Sbjct: 1357 ILTESVPCCEDGLT-CSRKIIVAFQDQNIVLQDGKVTAVKSTESKKCELNANAY 1409
>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo
sapiens]
Length = 1094
Score = 28.9 bits (63), Expect = 5.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 27 AEVVERVLTFLPAKALL-RVACVCRLWRECV 56
+EV+ V FLP + L ++ VC LWRE +
Sbjct: 268 SEVLRHVFAFLPVEDLYWNLSLVCHLWREII 298
>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
sapiens]
Length = 1043
Score = 28.9 bits (63), Expect = 5.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 27 AEVVERVLTFLPAKALL-RVACVCRLWRECV 56
+EV+ V FLP + L ++ VC LWRE +
Sbjct: 217 SEVLRHVFAFLPVEDLYWNLSLVCHLWREII 247
>gi|48928050 F-box and WD repeat domain containing 11 isoform C
[Homo sapiens]
Length = 542
Score = 28.5 bits (62), Expect = 6.7
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 26 LAEVVERVLTFLPAKALLRVACVCR----------LWRECVRRVLRT 62
L + E +L++L A++L VC+ LW++ + R++RT
Sbjct: 128 LDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRT 174
>gi|157743284 ankyrin repeat domain 52 [Homo sapiens]
Length = 1076
Score = 28.5 bits (62), Expect = 6.7
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 210 GLLDNPELRVVLVFGYN-CC-KVGASNYLQQVVSTFSDMNIILAGGQVDNLSSL 261
G+ D L + ++FG++ CC K+ +S L +VS+ S+ +++ AG ++ +L
Sbjct: 369 GIHDMFPLHLAVLFGFSDCCRKLLSSGQLYSIVSSLSNEHVLSAGFDINTPDNL 422
>gi|48928048 F-box and WD repeat domain containing 11 isoform A
[Homo sapiens]
Length = 508
Score = 28.5 bits (62), Expect = 6.7
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 26 LAEVVERVLTFLPAKALLRVACVCR----------LWRECVRRVLRT 62
L + E +L++L A++L VC+ LW++ + R++RT
Sbjct: 94 LDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRT 140
>gi|48928046 F-box and WD repeat domain containing 11 isoform B
[Homo sapiens]
Length = 529
Score = 28.5 bits (62), Expect = 6.7
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 26 LAEVVERVLTFLPAKALLRVACVCR----------LWRECVRRVLRT 62
L + E +L++L A++L VC+ LW++ + R++RT
Sbjct: 115 LDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRT 161
>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
Length = 843
Score = 28.1 bits (61), Expect = 8.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 8 GECRGSSVDPRSTFVLSNLA-EVVERVLTFLPAKALLRVACVCRLWRE 54
G+ + S P ++ L EVV ++ ++L + L R ACVC+ + E
Sbjct: 57 GKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSE 104
>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
Length = 686
Score = 28.1 bits (61), Expect = 8.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 8 GECRGSSVDPRSTFVLSNLA-EVVERVLTFLPAKALLRVACVCRLWRE 54
G+ + S P ++ L EVV ++ ++L + L R ACVC+ + E
Sbjct: 57 GKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSE 104
>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
Length = 585
Score = 28.1 bits (61), Expect = 8.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 8 GECRGSSVDPRSTFVLSNLA-EVVERVLTFLPAKALLRVACVCRLWRE 54
G+ + S P ++ L EVV ++ ++L + L R ACVC+ + E
Sbjct: 57 GKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSE 104
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,370,612
Number of Sequences: 37866
Number of extensions: 423053
Number of successful extensions: 837
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 19
length of query: 276
length of database: 18,247,518
effective HSP length: 101
effective length of query: 175
effective length of database: 14,423,052
effective search space: 2524034100
effective search space used: 2524034100
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.