Search of human proteins with 6005862

Search of human proteins with 6005862

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens]
         (348 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens]          737   0.0  
gi|4826988 ribosomal protein L3-like [Homo sapiens]                    41   0.002
gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]               39   0.005
gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]              39   0.005
gi|122937428 phospholipase A2, group 4E [Homo sapiens]                 32   0.84 
gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]                      31   1.9  
gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]                      31   1.9  
gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo ...    30   2.5  
gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo ...    30   2.5  
gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]            30   4.2  
gi|153792012 DNA polymerase zeta [Homo sapiens]                        30   4.2  
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    29   7.1  
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    29   7.1  
gi|11641239 hypothetical protein LOC53838 [Homo sapiens]               29   7.1  

>gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens]
          Length = 348

 Score =  737 bits (1903), Expect = 0.0
 Identities = 348/348 (100%), Positives = 348/348 (100%)

Query: 1   MPGWRLLTQVGAQVLGRLGDGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPF 60
           MPGWRLLTQVGAQVLGRLGDGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPF
Sbjct: 1   MPGWRLLTQVGAQVLGRLGDGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPF 60

Query: 61  IKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVT 120
           IKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVT
Sbjct: 61  IKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVT 120

Query: 121 LLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFN 180
           LLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFN
Sbjct: 121 LLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFN 180

Query: 181 ITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRP 240
           ITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRP
Sbjct: 181 ITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRP 240

Query: 241 GAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVK 300
           GAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVK
Sbjct: 241 GAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVK 300

Query: 301 DSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA 348
           DSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA
Sbjct: 301 DSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA 348


>gi|4826988 ribosomal protein L3-like [Homo sapiens]
          Length = 407

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 185 AAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTH---RRPG 241
           A ++   P+++  F   + +DV A T G+G +GV  RW  K  P      KTH   R+  
Sbjct: 199 ARLEKQVPVHSV-FSQSEVIDVIAVTKGRGVKGVTSRWHTKKLP-----RKTHKGLRKVA 252

Query: 242 AVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRI 276
            +      RV       G+ G  +RTE   K++RI
Sbjct: 253 CIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRI 287


>gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]
          Length = 403

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 198 FRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTH---RRPGAVATGDIGRVWPG 254
           F   + +DV   T GKG++GV  RW  K  P      KTH   R+   +      RV   
Sbjct: 211 FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP-----RKTHRGLRKVACIGAWHPARVAFS 265

Query: 255 TKMPGKMGNIYRTEYGLKVWRI 276
               G+ G  +RTE   K+++I
Sbjct: 266 VARAGQKGYHHRTEINKKIYKI 287


>gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]
          Length = 354

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 198 FRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTH---RRPGAVATGDIGRVWPG 254
           F   + +DV   T GKG++GV  RW  K  P      KTH   R+   +      RV   
Sbjct: 162 FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP-----RKTHRGLRKVACIGAWHPARVAFS 216

Query: 255 TKMPGKMGNIYRTEYGLKVWRI 276
               G+ G  +RTE   K+++I
Sbjct: 217 VARAGQKGYHHRTEINKKIYKI 238


>gi|122937428 phospholipase A2, group 4E [Homo sapiens]
          Length = 839

 Score = 32.0 bits (71), Expect = 0.84
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 312 KNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITF 347
           +N+PFP Y    + E L E    EN  +P AP +TF
Sbjct: 717 QNIPFPKYELPDENENLKECYLMENPQEPDAPIVTF 752


>gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]
          Length = 720

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 236 THRRPGAVATGDI----GRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIY-VNGSVP 290
           +H   G+  TG      G    GT + G++ +  R   GLK       HNI+  V G  P
Sbjct: 23  SHPFQGSTNTGSCLQQEGYEHRGTPVQGRLKSHSRDRNGLKKSNSPVHHNILAPVPGPAP 82

Query: 291 GHKNCLVKVKDSKL----PAYKDLGKNLPFPTYFPDGDEEELP--EDLYDENV 337
            H+  +  ++   L     A +D  K++P    F +  E+     E + D+N+
Sbjct: 83  AHQRAVQNLQQHNLIVHFQANEDTPKSVPEKNLFKEACEKRAQDLEMMADDNI 135


>gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]
          Length = 718

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 236 THRRPGAVATGDI----GRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIY-VNGSVP 290
           +H   G+  TG      G    GT + G++ +  R   GLK       HNI+  V G  P
Sbjct: 23  SHPFQGSTNTGSCLQQEGYEHRGTPVQGRLKSHSRDRNGLKKSNSPVHHNILAPVPGPAP 82

Query: 291 GHKNCLVKVKDSKL----PAYKDLGKNLPFPTYFPDGDEEELP--EDLYDENV 337
            H+  +  ++   L     A +D  K++P    F +  E+     E + D+N+
Sbjct: 83  AHQRAVQNLQQHNLIVHFQANEDTPKSVPEKNLFKEACEKRAQDLEMMADDNI 135


>gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo
           sapiens]
          Length = 628

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 297 VKVKDSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQ 339
           ++V++  LP  K +GK LP  T  PD  + E+      ++ C+
Sbjct: 194 IEVENDFLPVEKTIGKKLPATTATPDSSKTEMDSRTKSKDYCK 236


>gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo
           sapiens]
          Length = 665

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 297 VKVKDSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQ 339
           ++V++  LP  K +GK LP  T  PD  + E+      ++ C+
Sbjct: 231 IEVENDFLPVEKTIGKKLPATTATPDSSKTEMDSRTKSKDYCK 273


>gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 332

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 19  GDGLGAALGPGNRTHIWLFVRG 40
           G G G  LGPG+R H+ L +RG
Sbjct: 268 GVGRGLGLGPGSRAHLDLLIRG 289


>gi|153792012 DNA polymerase zeta [Homo sapiens]
          Length = 3130

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 62   KQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGS 94
            KQ++  E+K +L  KL PLKD  WP  P  P +
Sbjct: 1002 KQVILTEEKMELYKKLAPLKDF-WPKVPDSPAT 1033


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
           sapiens]
          Length = 1758

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 179 FNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ-GVMKRWGFKGQPATHGQTKTH 237
           F  +DN  I P   L + H +    + +TA    KG+Q  V+      GQ   HGQ    
Sbjct: 429 FRDSDNK-ILPAAALASEHSKGTSSIAITALMEEKGYQVPVLGTPSLLGQSLLHGQLIPT 487

Query: 238 RRPGAVATGDIGRVWPGTKMPGKMG 262
             P  + T   G   PG +   K+G
Sbjct: 488 TGPVRINTARPGGGRPGWEHSNKLG 512


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
           sapiens]
          Length = 1792

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 179 FNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ-GVMKRWGFKGQPATHGQTKTH 237
           F  +DN  I P   L + H +    + +TA    KG+Q  V+      GQ   HGQ    
Sbjct: 429 FRDSDNK-ILPAAALASEHSKGTSSIAITALMEEKGYQVPVLGTPSLLGQSLLHGQLIPT 487

Query: 238 RRPGAVATGDIGRVWPGTKMPGKMG 262
             P  + T   G   PG +   K+G
Sbjct: 488 TGPVRINTARPGGGRPGWEHSNKLG 512


>gi|11641239 hypothetical protein LOC53838 [Homo sapiens]
          Length = 449

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 135 KENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKP-GTPL 193
           +    G ++ +SV    V+   K+T +          P  T  +   T   A +P  +P+
Sbjct: 250 RPQAQGPISQVSVDQPVVNTTNKSTPMPS---NTTPEPAPTPTVVTTTKAQAREPTASPV 306

Query: 194 YAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDIGRVWP 253
              H  P   ++  + T         +R    G      Q +T   PG  +TG   R   
Sbjct: 307 PVPHTSPIPEMEAMSPTTQPSPMPYTQRAAGPGTSQAPEQVETEATPGTDSTGPTPRSSG 366

Query: 254 GTKMP 258
           GTKMP
Sbjct: 367 GTKMP 371


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,631,301
Number of Sequences: 37866
Number of extensions: 770864
Number of successful extensions: 1687
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1678
Number of HSP's gapped (non-prelim): 15
length of query: 348
length of database: 18,247,518
effective HSP length: 103
effective length of query: 245
effective length of database: 14,347,320
effective search space: 3515093400
effective search space used: 3515093400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.