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Search of human proteins with 58530848
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58530848 destrin isoform b [Homo sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58530848 destrin isoform b [Homo sapiens] 303 5e-83
gi|5802966 destrin isoform a [Homo sapiens] 303 5e-83
gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing... 221 2e-58
gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing... 219 5e-58
gi|113415024 PREDICTED: similar to destrin [Homo sapiens] 219 5e-58
gi|5031635 cofilin 1 (non-muscle) [Homo sapiens] 218 1e-57
gi|14719392 cofilin 2 [Homo sapiens] 209 5e-55
gi|33946278 cofilin 2 [Homo sapiens] 209 5e-55
gi|239754918 PREDICTED: similar to destrin [Homo sapiens] 161 2e-40
gi|239749458 PREDICTED: similar to destrin [Homo sapiens] 161 2e-40
gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo ... 161 2e-40
gi|6005846 twinfilin-like protein [Homo sapiens] 43 1e-04
gi|40068475 twinfilin 1 [Homo sapiens] 39 0.002
gi|33519475 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kD... 31 0.33
gi|31542743 EF-hand domain (C-terminal) containing 2 [Homo sapiens] 28 3.7
gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1 ... 28 3.7
gi|115430239 spectrin, beta, non-erythrocytic 4 isoform sigma5 [... 28 3.7
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 28 3.7
gi|18426913 drebrin 1 isoform b [Homo sapiens] 27 6.2
gi|18426915 drebrin 1 isoform a [Homo sapiens] 27 6.2
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 27 6.2
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 27 8.2
gi|24308241 zinc finger and BTB domain containing 2 [Homo sapiens] 27 8.2
>gi|58530848 destrin isoform b [Homo sapiens]
Length = 148
Score = 303 bits (775), Expect = 5e-83
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE
Sbjct: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
Query: 61 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 120
KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA
Sbjct: 61 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 120
Query: 121 NGPEDLNRACIAEKLGGSLIVAFEGCPV 148
NGPEDLNRACIAEKLGGSLIVAFEGCPV
Sbjct: 121 NGPEDLNRACIAEKLGGSLIVAFEGCPV 148
>gi|5802966 destrin isoform a [Homo sapiens]
Length = 165
Score = 303 bits (775), Expect = 5e-83
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE
Sbjct: 18 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 77
Query: 61 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 120
KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA
Sbjct: 78 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 137
Query: 121 NGPEDLNRACIAEKLGGSLIVAFEGCPV 148
NGPEDLNRACIAEKLGGSLIVAFEGCPV
Sbjct: 138 NGPEDLNRACIAEKLGGSLIVAFEGCPV 165
>gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 221 bits (563), Expect = 2e-58
Identities = 116/149 (77%), Positives = 121/149 (81%), Gaps = 8/149 (5%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
+KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI GD+GVTIT PFKHFVGMLPE
Sbjct: 111 IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVTITGPFKHFVGMLPE 170
Query: 61 KDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQ 119
KDC YALYDASFETK+S R + FLWAPEL PLKSKMI+ S KDAIKKKF Q
Sbjct: 171 KDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKF-------Q 223
Query: 120 ANGPEDLNRACIAEKLGGSLIVAFEGCPV 148
ANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 224 ANGPEDLNWACIAEKLDGYLIAAFEGCSV 252
>gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 219 bits (559), Expect = 5e-58
Identities = 115/149 (77%), Positives = 121/149 (81%), Gaps = 8/149 (5%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
+KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI GD+GV+IT PFKHFVGMLPE
Sbjct: 111 IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPE 170
Query: 61 KDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQ 119
KDC YALYDASFETK+S R + FLWAPEL PLKSKMI+ S KDAIKKKF Q
Sbjct: 171 KDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKF-------Q 223
Query: 120 ANGPEDLNRACIAEKLGGSLIVAFEGCPV 148
ANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 224 ANGPEDLNWACIAEKLDGYLIAAFEGCSV 252
>gi|113415024 PREDICTED: similar to destrin [Homo sapiens]
Length = 199
Score = 219 bits (559), Expect = 5e-58
Identities = 115/149 (77%), Positives = 121/149 (81%), Gaps = 8/149 (5%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
+KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI GD+GV+IT PFKHFVGMLPE
Sbjct: 58 IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPE 117
Query: 61 KDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQ 119
KDC YALYDASFETK+S R + FLWAPEL PLKSKMI+ S KDAIKKKF Q
Sbjct: 118 KDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKF-------Q 170
Query: 120 ANGPEDLNRACIAEKLGGSLIVAFEGCPV 148
ANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 171 ANGPEDLNWACIAEKLDGYLIAAFEGCSV 199
>gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]
Length = 166
Score = 218 bits (556), Expect = 1e-57
Identities = 108/149 (72%), Positives = 126/149 (84%), Gaps = 1/149 (0%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
MKVRK STPEE+KKRKKAV+FCLS DKK II+EEGKEILVGDVG T+ DP+ FV MLP+
Sbjct: 18 MKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPD 77
Query: 61 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 120
KDCRYALYDA++ETKES+KE+L+F WAPE APLKSKMIYASSKDAIKKK GIKHE QA
Sbjct: 78 KDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
Query: 121 NGPEDLNRAC-IAEKLGGSLIVAFEGCPV 148
N E++ C +AEKLGGS +++ EG P+
Sbjct: 138 NCYEEVKDRCTLAEKLGGSAVISLEGKPL 166
>gi|14719392 cofilin 2 [Homo sapiens]
Length = 166
Score = 209 bits (533), Expect = 5e-55
Identities = 103/149 (69%), Positives = 125/149 (83%), Gaps = 1/149 (0%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
MKVRK ST EEIKKRKKAV+FCLS DK+ IIVEE K+ILVGD+G T+ DP+ FV +LP
Sbjct: 18 MKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPL 77
Query: 61 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 120
DCRYALYDA++ETKES+KE+L+F WAPE APLKSKMIYASSKDAIKKKF GIKHE Q
Sbjct: 78 NDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQV 137
Query: 121 NGPEDL-NRACIAEKLGGSLIVAFEGCPV 148
NG +D+ +R+ + EKLGG+++V+ EG P+
Sbjct: 138 NGLDDIKDRSTLGEKLGGNVVVSLEGKPL 166
>gi|33946278 cofilin 2 [Homo sapiens]
Length = 166
Score = 209 bits (533), Expect = 5e-55
Identities = 103/149 (69%), Positives = 125/149 (83%), Gaps = 1/149 (0%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
MKVRK ST EEIKKRKKAV+FCLS DK+ IIVEE K+ILVGD+G T+ DP+ FV +LP
Sbjct: 18 MKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPL 77
Query: 61 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 120
DCRYALYDA++ETKES+KE+L+F WAPE APLKSKMIYASSKDAIKKKF GIKHE Q
Sbjct: 78 NDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQV 137
Query: 121 NGPEDL-NRACIAEKLGGSLIVAFEGCPV 148
NG +D+ +R+ + EKLGG+++V+ EG P+
Sbjct: 138 NGLDDIKDRSTLGEKLGGNVVVSLEGKPL 166
>gi|239754918 PREDICTED: similar to destrin [Homo sapiens]
Length = 103
Score = 161 bits (407), Expect = 2e-40
Identities = 79/86 (91%), Positives = 81/86 (94%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
MKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDVGVTIT PFKHFVGMLPE
Sbjct: 18 MKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGVTITGPFKHFVGMLPE 77
Query: 61 KDCRYALYDASFETKESRKEELMFFL 86
KDCR ALYDASFETKES EEL+FFL
Sbjct: 78 KDCRCALYDASFETKESSTEELIFFL 103
>gi|239749458 PREDICTED: similar to destrin [Homo sapiens]
Length = 103
Score = 161 bits (407), Expect = 2e-40
Identities = 79/86 (91%), Positives = 81/86 (94%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
MKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDVGVTIT PFKHFVGMLPE
Sbjct: 18 MKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGVTITGPFKHFVGMLPE 77
Query: 61 KDCRYALYDASFETKESRKEELMFFL 86
KDCR ALYDASFETKES EEL+FFL
Sbjct: 78 KDCRCALYDASFETKESSTEELIFFL 103
>gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo
sapiens]
Length = 103
Score = 161 bits (407), Expect = 2e-40
Identities = 79/86 (91%), Positives = 81/86 (94%)
Query: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
MKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDVGVTIT PFKHFVGMLPE
Sbjct: 18 MKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGVTITGPFKHFVGMLPE 77
Query: 61 KDCRYALYDASFETKESRKEELMFFL 86
KDCR ALYDASFETKES EEL+FFL
Sbjct: 78 KDCRCALYDASFETKESSTEELIFFL 103
>gi|6005846 twinfilin-like protein [Homo sapiens]
Length = 349
Score = 42.7 bits (99), Expect = 1e-04
Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 31 IVEEGKEILVG----DVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFL 86
+V E +++++G VG D + + +L + Y LY +++ ++ E +F
Sbjct: 30 VVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLY--RLDSQNAQGFEWLFLA 87
Query: 87 WAPELAPLKSKMIYASSKDAIKKKFQG--IKHECQANGPEDLNRA 129
W+P+ +P++ KM+YA+++ +KK+F G IK E +DL+ A
Sbjct: 88 WSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFA 132
>gi|40068475 twinfilin 1 [Homo sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.002
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 57 MLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQG--I 114
+L +K Y L+ +++ ++ E +F W+P+ + ++ KM+YA+++ +KK+F G I
Sbjct: 94 LLEDKQPCYILF--RLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHI 151
Query: 115 KHECQANGPEDLN 127
K E ED++
Sbjct: 152 KDEVFGTVKEDVS 164
>gi|33519475 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa
precursor [Homo sapiens]
Length = 727
Score = 31.2 bits (69), Expect = 0.33
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 10 EEIKKRKKAVIFCLSAD----------KKCIIVEEGKEILVGDVGVTITDPFKHFVGMLP 59
E I+K V+F L AD K C I+ +G GDVG I D +LP
Sbjct: 535 EAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHH---GDVGAPIADV------ILP 585
Query: 60 EKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDA 106
Y A++ E R ++ + P LA K+I A S+ A
Sbjct: 586 --GAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIA 630
>gi|31542743 EF-hand domain (C-terminal) containing 2 [Homo sapiens]
Length = 749
Score = 27.7 bits (60), Expect = 3.7
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 49 DPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIK 108
D K F+ + C + L+D S R+E ++ + + +K + ++S +DA+K
Sbjct: 217 DTLKQFLQYHGKILCFFCLWDDSVSMFGDRRELILHYFLCDDTIEIKELLPHSSGRDALK 276
>gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1
[Homo sapiens]
Length = 352
Score = 27.7 bits (60), Expect = 3.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 9 PEEIKKRKKAVIFCLSADKKCIIVEEG 35
PE+ + K A + CLS+ K C+ +E G
Sbjct: 292 PEDRESLKSACVVCLSSFKSCVFLECG 318
>gi|115430239 spectrin, beta, non-erythrocytic 4 isoform sigma5
[Homo sapiens]
Length = 678
Score = 27.7 bits (60), Expect = 3.7
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 23 LSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEEL 82
L A + +E + LVG+ + + + L E R L AS E + +
Sbjct: 145 LQAQTAALPLEPASKELVGERQNAVGERLVRLLEPLQE---RRRLLLASKELHQVAHDLD 201
Query: 83 MFFLWAPELAPLKSKMIYASSKDAIK---KKFQGIKHECQANGP---EDLNRA 129
W E PL + + A++ KK QG++ E QA+GP E L RA
Sbjct: 202 DELAWVQERLPLAMQTERGNGLQAVQQHIKKNQGLRREIQAHGPRLEEVLERA 254
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo
sapiens]
Length = 2564
Score = 27.7 bits (60), Expect = 3.7
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 23 LSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEEL 82
L A + +E + LVG+ + + + L E R L AS E + +
Sbjct: 1469 LQAQTAALPLEPASKELVGERQNAVGERLVRLLEPLQE---RRRLLLASKELHQVAHDLD 1525
Query: 83 MFFLWAPELAPLKSKMIYASSKDAIK---KKFQGIKHECQANGP---EDLNRA 129
W E PL + + A++ KK QG++ E QA+GP E L RA
Sbjct: 1526 DELAWVQERLPLAMQTERGNGLQAVQQHIKKNQGLRREIQAHGPRLEEVLERA 1578
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 26.9 bits (58), Expect = 6.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 87 WAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSL 139
W E P K AS + + FQG+ A+ ED++ I ++L L
Sbjct: 87 WVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASSVEDIDAGAIGQRLSNGL 139
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 26.9 bits (58), Expect = 6.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 87 WAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSL 139
W E P K AS + + FQG+ A+ ED++ I ++L L
Sbjct: 85 WVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASSVEDIDAGAIGQRLSNGL 137
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 26.9 bits (58), Expect = 6.2
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 10 EEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYD 69
EE+K++ + F S +K + +EE + L +V P D +
Sbjct: 1672 EEMKEKMRK--FAKSKQQKILELEEENDRLRAEVH--------------PAGDTAKECME 1715
Query: 70 ASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 127
+ S KEEL E K + + S KD++ ++ Q +KH+ + N + N
Sbjct: 1716 TLLSSNASMKEELERVKMEYETLSKKFQSLM-SEKDSLSEEVQDLKHQIEGNVSKQAN 1772
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog
[Homo sapiens]
Length = 619
Score = 26.6 bits (57), Expect = 8.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 45 VTITDPFKHFVGMLPEKDCRYALYDASF 72
VT DP+K L KDCR Y+A F
Sbjct: 66 VTKNDPYKPHPHDLVGKDCRDGYYEAEF 93
>gi|24308241 zinc finger and BTB domain containing 2 [Homo sapiens]
Length = 514
Score = 26.6 bits (57), Expect = 8.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 7 STPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDP 50
STP E+ K C + + ++EG+ IL+G +T+P
Sbjct: 458 STPNEVVKHS-----CQNQNSDVFALDEGRSILLGSGDSEVTEP 496
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,816,217
Number of Sequences: 37866
Number of extensions: 228554
Number of successful extensions: 427
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 23
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.