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Search of human proteins with 58331230
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58331230 DALR anticodon binding domain containing 3 isoform
1 [Homo sapiens]
(543 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58331230 DALR anticodon binding domain containing 3 isoform 1... 1093 0.0
gi|38146111 DALR anticodon binding domain containing 3 isoform 2... 763 0.0
gi|239748132 PREDICTED: hypothetical protein XP_002346560 [Homo ... 307 1e-83
gi|197100773 arginyl-tRNA synthetase 2, mitochondrial precursor ... 33 0.51
gi|239752663 PREDICTED: similar to HSPC088 [Homo sapiens] 33 0.87
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 33 0.87
gi|157057547 Fc receptor-like 6 [Homo sapiens] 30 4.3
gi|226958551 Fc receptor-like 1 isoform 3 precursor [Homo sapiens] 30 7.4
gi|226958547 Fc receptor-like 1 isoform 2 precursor [Homo sapiens] 30 7.4
gi|16418419 Fc receptor-like 1 isoform 1 precursor [Homo sapiens] 30 7.4
gi|110611239 alpha-L-iduronidase precursor [Homo sapiens] 30 7.4
gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo sa... 30 7.4
gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo sa... 30 7.4
gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo sap... 30 7.4
gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo sap... 30 7.4
gi|190358490 hypothetical protein LOC51313 isoform 1 [Homo sapiens] 30 7.4
gi|154937380 hypothetical protein LOC642475 [Homo sapiens] 30 7.4
gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)... 29 9.6
>gi|58331230 DALR anticodon binding domain containing 3 isoform 1
[Homo sapiens]
Length = 543
Score = 1093 bits (2827), Expect = 0.0
Identities = 543/543 (100%), Positives = 543/543 (100%)
Query: 1 MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL 60
MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL
Sbjct: 1 MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL 60
Query: 61 LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL 120
LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL
Sbjct: 61 LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL 120
Query: 121 HCPALRSSPCALRLSQLRTVLVADHLARALRAHGVCVRLVPAVRDPHMLTFLQQLRVDWP 180
HCPALRSSPCALRLSQLRTVLVADHLARALRAHGVCVRLVPAVRDPHMLTFLQQLRVDWP
Sbjct: 121 HCPALRSSPCALRLSQLRTVLVADHLARALRAHGVCVRLVPAVRDPHMLTFLQQLRVDWP 180
Query: 181 AASERASSHTLRSHALEELTSANDGRTLSPGILGRLCLKELVEEQGRTAGYDPNLDNCLV 240
AASERASSHTLRSHALEELTSANDGRTLSPGILGRLCLKELVEEQGRTAGYDPNLDNCLV
Sbjct: 181 AASERASSHTLRSHALEELTSANDGRTLSPGILGRLCLKELVEEQGRTAGYDPNLDNCLV 240
Query: 241 TEDLLSVLAELQEALWHWPEDSHPGLAGASDTGTGGCLVVHVVSCEEEFQQQKLDLLWQK 300
TEDLLSVLAELQEALWHWPEDSHPGLAGASDTGTGGCLVVHVVSCEEEFQQQKLDLLWQK
Sbjct: 241 TEDLLSVLAELQEALWHWPEDSHPGLAGASDTGTGGCLVVHVVSCEEEFQQQKLDLLWQK 300
Query: 301 LVDKAPLRQKHLICGPVKVAGAPGTLMTAPEYYEFRHTQVCKASALKHGGDLAQDPAWTE 360
LVDKAPLRQKHLICGPVKVAGAPGTLMTAPEYYEFRHTQVCKASALKHGGDLAQDPAWTE
Sbjct: 301 LVDKAPLRQKHLICGPVKVAGAPGTLMTAPEYYEFRHTQVCKASALKHGGDLAQDPAWTE 360
Query: 361 IFGVLSVATIKFEMLSTAPQSQLFLALADSSISTKGTKSGTFVMYNCARLATLFESYKCS 420
IFGVLSVATIKFEMLSTAPQSQLFLALADSSISTKGTKSGTFVMYNCARLATLFESYKCS
Sbjct: 361 IFGVLSVATIKFEMLSTAPQSQLFLALADSSISTKGTKSGTFVMYNCARLATLFESYKCS 420
Query: 421 MEQGLYPTFPPVSSLDFSLLHDEGEWLLLFNSILPFPDLLSRTAVLDCTAPGLHIAVRTE 480
MEQGLYPTFPPVSSLDFSLLHDEGEWLLLFNSILPFPDLLSRTAVLDCTAPGLHIAVRTE
Sbjct: 421 MEQGLYPTFPPVSSLDFSLLHDEGEWLLLFNSILPFPDLLSRTAVLDCTAPGLHIAVRTE 480
Query: 481 MICKFLVQLSMDFSSYYNRVHILGEPRPHLFGQMFVRLQLLRAVREVLHTGLAMLGLPPL 540
MICKFLVQLSMDFSSYYNRVHILGEPRPHLFGQMFVRLQLLRAVREVLHTGLAMLGLPPL
Sbjct: 481 MICKFLVQLSMDFSSYYNRVHILGEPRPHLFGQMFVRLQLLRAVREVLHTGLAMLGLPPL 540
Query: 541 SHI 543
SHI
Sbjct: 541 SHI 543
>gi|38146111 DALR anticodon binding domain containing 3 isoform 2
[Homo sapiens]
Length = 376
Score = 763 bits (1969), Expect = 0.0
Identities = 376/376 (100%), Positives = 376/376 (100%)
Query: 168 MLTFLQQLRVDWPAASERASSHTLRSHALEELTSANDGRTLSPGILGRLCLKELVEEQGR 227
MLTFLQQLRVDWPAASERASSHTLRSHALEELTSANDGRTLSPGILGRLCLKELVEEQGR
Sbjct: 1 MLTFLQQLRVDWPAASERASSHTLRSHALEELTSANDGRTLSPGILGRLCLKELVEEQGR 60
Query: 228 TAGYDPNLDNCLVTEDLLSVLAELQEALWHWPEDSHPGLAGASDTGTGGCLVVHVVSCEE 287
TAGYDPNLDNCLVTEDLLSVLAELQEALWHWPEDSHPGLAGASDTGTGGCLVVHVVSCEE
Sbjct: 61 TAGYDPNLDNCLVTEDLLSVLAELQEALWHWPEDSHPGLAGASDTGTGGCLVVHVVSCEE 120
Query: 288 EFQQQKLDLLWQKLVDKAPLRQKHLICGPVKVAGAPGTLMTAPEYYEFRHTQVCKASALK 347
EFQQQKLDLLWQKLVDKAPLRQKHLICGPVKVAGAPGTLMTAPEYYEFRHTQVCKASALK
Sbjct: 121 EFQQQKLDLLWQKLVDKAPLRQKHLICGPVKVAGAPGTLMTAPEYYEFRHTQVCKASALK 180
Query: 348 HGGDLAQDPAWTEIFGVLSVATIKFEMLSTAPQSQLFLALADSSISTKGTKSGTFVMYNC 407
HGGDLAQDPAWTEIFGVLSVATIKFEMLSTAPQSQLFLALADSSISTKGTKSGTFVMYNC
Sbjct: 181 HGGDLAQDPAWTEIFGVLSVATIKFEMLSTAPQSQLFLALADSSISTKGTKSGTFVMYNC 240
Query: 408 ARLATLFESYKCSMEQGLYPTFPPVSSLDFSLLHDEGEWLLLFNSILPFPDLLSRTAVLD 467
ARLATLFESYKCSMEQGLYPTFPPVSSLDFSLLHDEGEWLLLFNSILPFPDLLSRTAVLD
Sbjct: 241 ARLATLFESYKCSMEQGLYPTFPPVSSLDFSLLHDEGEWLLLFNSILPFPDLLSRTAVLD 300
Query: 468 CTAPGLHIAVRTEMICKFLVQLSMDFSSYYNRVHILGEPRPHLFGQMFVRLQLLRAVREV 527
CTAPGLHIAVRTEMICKFLVQLSMDFSSYYNRVHILGEPRPHLFGQMFVRLQLLRAVREV
Sbjct: 301 CTAPGLHIAVRTEMICKFLVQLSMDFSSYYNRVHILGEPRPHLFGQMFVRLQLLRAVREV 360
Query: 528 LHTGLAMLGLPPLSHI 543
LHTGLAMLGLPPLSHI
Sbjct: 361 LHTGLAMLGLPPLSHI 376
>gi|239748132 PREDICTED: hypothetical protein XP_002346560 [Homo
sapiens]
Length = 154
Score = 307 bits (787), Expect = 1e-83
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL 60
MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL
Sbjct: 1 MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL 60
Query: 61 LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL 120
LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL
Sbjct: 61 LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL 120
Query: 121 HCPALRSSPCALRLSQLRTVLVADHLARALRAHG 154
HCPALRSSPCALRLSQLRTVLVADHLARALRAHG
Sbjct: 121 HCPALRSSPCALRLSQLRTVLVADHLARALRAHG 154
>gi|197100773 arginyl-tRNA synthetase 2, mitochondrial precursor
[Homo sapiens]
Length = 578
Score = 33.5 bits (75), Expect = 0.51
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 399 SGTFVMYNCARLATLFESYKCSMEQGLYPTFPPVSSLDFSLLHDEGEWLLLFNSILPFPD 458
+G F+ Y ARL +L E++ C ++ + + L E + + + +L F +
Sbjct: 459 TGVFLQYTHARLHSLEETFGCGY----------LNDFNTACLQ-EPQSVSILQHLLRFDE 507
Query: 459 LLSRTAVLDCTAPGLHIAVRTEMICKFLVQLSMDFSSYYNRVHILGEPRPHLFGQMFVRL 518
+L +++ + I +L+ LS + + + I P P + G RL
Sbjct: 508 VLYKSSQ----------DFQPRHIVSYLLTLSHLAAVAHKTLQIKDSP-PEVAG---ARL 553
Query: 519 QLLRAVREVLHTGLAMLGLPPL 540
L +AVR VL G+ +LG+ P+
Sbjct: 554 HLFKAVRSVLANGMKLLGITPV 575
>gi|239752663 PREDICTED: similar to HSPC088 [Homo sapiens]
Length = 190
Score = 32.7 bits (73), Expect = 0.87
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 13 GALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHAL-------- 64
GA NAA PG P R +D + R L R + ++PE L AL
Sbjct: 53 GAANAAPAPGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSL 112
Query: 65 ---ACLQGPGVAPVLRCAPTP 82
C+ V P++ + TP
Sbjct: 113 GTILCVPSVPVGPIVLTSATP 133
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 32.7 bits (73), Expect = 0.87
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 58 EHLLHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQR 117
+H LA QGPG+ PV A ++ Q+Q A F V + + A SP G
Sbjct: 252 QHQAALLAAAQGPGLGPV-------AAVAAQMQHVAAFSLVAAPLLPAAAANSPPGSGPG 304
Query: 118 VLLHCPA 124
L PA
Sbjct: 305 TLPGLPA 311
>gi|157057547 Fc receptor-like 6 [Homo sapiens]
Length = 434
Score = 30.4 bits (67), Expect = 4.3
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 62 HALACLQGP--GVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAA-----YATPASPASL 114
H C+ G G + + C P G +Q Q + RV + V+ + PA PA +
Sbjct: 162 HPELCIPGAKEGDSGLYWCEVAPEGGQVQKQSPQLEVRVQAPVSRPVLTLHHGPADPA-V 220
Query: 115 GQRVLLHCPALRSSPCALRLSQLRTVLVADHLA 147
G V L C A R SP L L +V +H A
Sbjct: 221 GDMVQLLCEAQRGSPPILYSFYLDEKIVGNHSA 253
>gi|226958551 Fc receptor-like 1 isoform 3 precursor [Homo sapiens]
Length = 428
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 16 NAALGPGGP--VWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHALACLQGPGVA 73
+ A+G G +W K +L+S+ R+L A ++ V E C+ G
Sbjct: 135 SVAMGTGDITFLWYKGAVGLNLQSKT----QRSLTAEYEIPSVRESDAEQYYCVAENGYG 190
Query: 74 PVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLHCPALRSSP 129
P +P+GL R V +L A P + A++ + LHC ALR SP
Sbjct: 191 P------SPSGLVSITVRIPVSRPILMLRA----PRAQAAVEDVLELHCEALRGSP 236
>gi|226958547 Fc receptor-like 1 isoform 2 precursor [Homo sapiens]
Length = 366
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 16 NAALGPGGP--VWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHALACLQGPGVA 73
+ A+G G +W K +L+S+ R+L A ++ V E C+ G
Sbjct: 135 SVAMGTGDITFLWYKGAVGLNLQSKT----QRSLTAEYEIPSVRESDAEQYYCVAENGYG 190
Query: 74 PVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLHCPALRSSP 129
P +P+GL R V +L A P + A++ + LHC ALR SP
Sbjct: 191 P------SPSGLVSITVRIPVSRPILMLRA----PRAQAAVEDVLELHCEALRGSP 236
>gi|16418419 Fc receptor-like 1 isoform 1 precursor [Homo sapiens]
Length = 429
Score = 29.6 bits (65), Expect = 7.4
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 16 NAALGPGGP--VWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHALACLQGPGVA 73
+ A+G G +W K +L+S+ R+L A ++ V E C+ G
Sbjct: 135 SVAMGTGDITFLWYKGAVGLNLQSKT----QRSLTAEYEIPSVRESDAEQYYCVAENGYG 190
Query: 74 PVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLHCPALRSSP 129
P +P+GL R V +L A P + A++ + LHC ALR SP
Sbjct: 191 P------SPSGLVSITVRIPVSRPILMLRA----PRAQAAVEDVLELHCEALRGSP 236
>gi|110611239 alpha-L-iduronidase precursor [Homo sapiens]
Length = 653
Score = 29.6 bits (65), Expect = 7.4
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 146 LARALRAHGVCVRLVPAVRDPHMLTFLQQLRVDWPAASERASSHTLRSHALEEL--TSAN 203
L R R+ G C L + D ++L++ QQL + + A +R+H L EL T +
Sbjct: 43 LRRFWRSTGFCPPLPHSQADQYVLSWDQQLNLAYVGAVPHRGIKQVRTHWLLELVTTRGS 102
Query: 204 DGRTLS 209
GR LS
Sbjct: 103 TGRGLS 108
>gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo
sapiens]
Length = 1032
Score = 29.6 bits (65), Expect = 7.4
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 91 RSAVFERVLSAVAAYATPASPASLGQRVLLHCP-------ALRSSPCALRLSQLRTV--- 140
R+A+FE+VL + Y S + LL P +L PCAL ++++T
Sbjct: 132 RTALFEKVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKTADHF 191
Query: 141 ---LVADHLARALRAHGVCVR 158
AD L + R H VR
Sbjct: 192 WTDPSADELVQRHRIHSSHVR 212
>gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo
sapiens]
Length = 1093
Score = 29.6 bits (65), Expect = 7.4
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 91 RSAVFERVLSAVAAYATPASPASLGQRVLLHCP-------ALRSSPCALRLSQLRTV--- 140
R+A+FE+VL + Y S + LL P +L PCAL ++++T
Sbjct: 132 RTALFEKVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKTADHF 191
Query: 141 ---LVADHLARALRAHGVCVR 158
AD L + R H VR
Sbjct: 192 WTDPSADELVQRHRIHSSHVR 212
>gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1087
Score = 29.6 bits (65), Expect = 7.4
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 91 RSAVFERVLSAVAAYATPASPASLGQRVLLHCP-------ALRSSPCALRLSQLRTV--- 140
R+A+FE+VL + Y S + LL P +L PCAL ++++T
Sbjct: 132 RTALFEKVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKTADHF 191
Query: 141 ---LVADHLARALRAHGVCVR 158
AD L + R H VR
Sbjct: 192 WTDPSADELVQRHRIHSSHVR 212
>gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo
sapiens]
Length = 1148
Score = 29.6 bits (65), Expect = 7.4
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 91 RSAVFERVLSAVAAYATPASPASLGQRVLLHCP-------ALRSSPCALRLSQLRTV--- 140
R+A+FE+VL + Y S + LL P +L PCAL ++++T
Sbjct: 132 RTALFEKVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKTADHF 191
Query: 141 ---LVADHLARALRAHGVCVR 158
AD L + R H VR
Sbjct: 192 WTDPSADELVQRHRIHSSHVR 212
>gi|190358490 hypothetical protein LOC51313 isoform 1 [Homo sapiens]
Length = 527
Score = 29.6 bits (65), Expect = 7.4
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 64 LACLQGPGVAPVLRCAPTPAGLSLQ-LQRSAVF----ERVLSAVAAYATPASPASLGQRV 118
L L+G VLRC P+P GL Q L S VF +R+L + + A Q
Sbjct: 246 LLVLEGGAPGAVLRCGPSPCGLLKQPLDMSEVFAFHLDRILGLNRTLPSVSRKAEFIQAA 305
Query: 119 LLHCPALR 126
C ++R
Sbjct: 306 AAACLSMR 313
>gi|154937380 hypothetical protein LOC642475 [Homo sapiens]
Length = 719
Score = 29.6 bits (65), Expect = 7.4
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 43 PHRALQARFDDGQVPEHLLHALACLQGPGVAP------VLRCAPTPAGLSLQLQRSAVFE 96
PH+ Q+ +++G + + L+ ACL+ G A L A G L+ Q A+
Sbjct: 96 PHQVPQSSWEEGVLADLALYTAACLEEAGFAGTQATVLTLSSALEARGERLEDQVHALVR 155
Query: 97 RVLSAVAAYATPASPASLGQRVL--LHCPALRSSPCALRLSQLRTVLVADHLARAL---- 150
+L+ V + A P RVL L R CAL L VA L R+L
Sbjct: 156 GLLAQVPSLA-EGRPWRAALRVLSALALEHARDVVCALLPRSLPADRVAAELWRSLSRNQ 214
Query: 151 RAHG-VCVRLVPAVR 164
R +G V V+L+ A++
Sbjct: 215 RVNGQVLVQLLWALK 229
>gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)
[Homo sapiens]
Length = 731
Score = 29.3 bits (64), Expect = 9.6
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 163 VRDPHMLTFLQQLRVDWPAASERASSHTLRSHALE----ELTSANDGRTLSPGILGRLCL 218
++DP+ + ++Q ++ +R H L+ H L+ E T + P +
Sbjct: 103 MKDPYKVV-MKQSKLPMSLLHDRIRPHNLKVHILDTESFETTFGPKSQRKRPNLFASDMQ 161
Query: 219 KELVEEQGRTAGYDPNLDNCLVTEDLLSVLAELQEALW 256
+ + T YD D LVTED V E QE ++
Sbjct: 162 SLIENAEMSTESYDQGKDRDLVTED-TGVRNEAQEEIY 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,457,638
Number of Sequences: 37866
Number of extensions: 1055902
Number of successful extensions: 2163
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2155
Number of HSP's gapped (non-prelim): 21
length of query: 543
length of database: 18,247,518
effective HSP length: 107
effective length of query: 436
effective length of database: 14,195,856
effective search space: 6189393216
effective search space used: 6189393216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.