Search of human proteins with 58219024

Search of human proteins with 58219024

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58219024 hypothetical protein LOC352999 [Homo sapiens]
         (330 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58219024 hypothetical protein LOC352999 [Homo sapiens]             687   0.0  
gi|5174513 mothers against decapentaplegic homolog 3 isoform 1 [...    31   1.7  
gi|223029442 mothers against decapentaplegic homolog 3 isoform 3...    31   1.7  
gi|223029440 mothers against decapentaplegic homolog 3 isoform 2...    31   1.7  
gi|4504657 interleukin 18 receptor accessory protein precursor [...    28   8.6  
gi|52632381 melanoma antigen family D, 1 isoform a [Homo sapiens]      28   8.6  
gi|52632379 melanoma antigen family D, 1 isoform b [Homo sapiens]      28   8.6  
gi|52632377 melanoma antigen family D, 1 isoform b [Homo sapiens]      28   8.6  

>gi|58219024 hypothetical protein LOC352999 [Homo sapiens]
          Length = 330

 Score =  687 bits (1774), Expect = 0.0
 Identities = 330/330 (100%), Positives = 330/330 (100%)

Query: 1   MAFLPSWVCVLVGSFSASLAGTSNLSETEPPLWKESPGQLSDYRVENSMYIINPWVYLER 60
           MAFLPSWVCVLVGSFSASLAGTSNLSETEPPLWKESPGQLSDYRVENSMYIINPWVYLER
Sbjct: 1   MAFLPSWVCVLVGSFSASLAGTSNLSETEPPLWKESPGQLSDYRVENSMYIINPWVYLER 60

Query: 61  MGMYKIILNQTARYFAKFAPDNEQNILWGLPLQYGWQYRTGRLADPTRRTNCGYESGDHM 120
           MGMYKIILNQTARYFAKFAPDNEQNILWGLPLQYGWQYRTGRLADPTRRTNCGYESGDHM
Sbjct: 61  MGMYKIILNQTARYFAKFAPDNEQNILWGLPLQYGWQYRTGRLADPTRRTNCGYESGDHM 120

Query: 121 CISVDSWWADLNYFLSSLPFLAAVDSGVMGISSDQVRLLPPPKNERKFCYDVSSCRSSFP 180
           CISVDSWWADLNYFLSSLPFLAAVDSGVMGISSDQVRLLPPPKNERKFCYDVSSCRSSFP
Sbjct: 121 CISVDSWWADLNYFLSSLPFLAAVDSGVMGISSDQVRLLPPPKNERKFCYDVSSCRSSFP 180

Query: 181 ETMNKWNTFYQYLQSPFSKFDDLLKYLWAAHTSTLADNIKSFEDRYDYYSKAEAHFERSW 240
           ETMNKWNTFYQYLQSPFSKFDDLLKYLWAAHTSTLADNIKSFEDRYDYYSKAEAHFERSW
Sbjct: 181 ETMNKWNTFYQYLQSPFSKFDDLLKYLWAAHTSTLADNIKSFEDRYDYYSKAEAHFERSW 240

Query: 241 VLAVDHLAAVLFPTTLIRSYKFQKGMPPRILLNTDVAPFISDFTAFQNVVLVLLNMLDNV 300
           VLAVDHLAAVLFPTTLIRSYKFQKGMPPRILLNTDVAPFISDFTAFQNVVLVLLNMLDNV
Sbjct: 241 VLAVDHLAAVLFPTTLIRSYKFQKGMPPRILLNTDVAPFISDFTAFQNVVLVLLNMLDNV 300

Query: 301 DKSIGYLCTEKSNVYRDHSESSSRSYGNNS 330
           DKSIGYLCTEKSNVYRDHSESSSRSYGNNS
Sbjct: 301 DKSIGYLCTEKSNVYRDHSESSSRSYGNNS 330


>gi|5174513 mothers against decapentaplegic homolog 3 isoform 1
           [Homo sapiens]
          Length = 425

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 14  SFSASLAGTSNLSETEPPLWKESPGQLSDYRVENSM 49
           +F A +   SN+ ET PP +    G+ SD+++ +SM
Sbjct: 165 NFPAGIEPQSNIPETPPPGYLSEDGETSDHQMNHSM 200


>gi|223029442 mothers against decapentaplegic homolog 3 isoform 3
           [Homo sapiens]
          Length = 381

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 14  SFSASLAGTSNLSETEPPLWKESPGQLSDYRVENSM 49
           +F A +   SN+ ET PP +    G+ SD+++ +SM
Sbjct: 121 NFPAGIEPQSNIPETPPPGYLSEDGETSDHQMNHSM 156


>gi|223029440 mothers against decapentaplegic homolog 3 isoform 2
          [Homo sapiens]
          Length = 320

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 14 SFSASLAGTSNLSETEPPLWKESPGQLSDYRVENSM 49
          +F A +   SN+ ET PP +    G+ SD+++ +SM
Sbjct: 60 NFPAGIEPQSNIPETPPPGYLSEDGETSDHQMNHSM 95


>gi|4504657 interleukin 18 receptor accessory protein precursor
           [Homo sapiens]
          Length = 599

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 203 LLKYLWAAHTSTLADNIKSFEDRYDYYSKAEAHFERSWVLAVDHLAAVLFPTTLIRSYKF 262
           LL   + +   TL D  K F+    Y   +    E +  L+ +HLA  LFP  L   Y +
Sbjct: 390 LLYRTYQSKDQTLGDK-KDFDAFVSYAKWSSFPSEATSSLSEEHLALSLFPDVLENKYGY 448

Query: 263 QKGMPPRILLNTDVAP 278
                   LL  DVAP
Sbjct: 449 S-----LCLLERDVAP 459


>gi|52632381 melanoma antigen family D, 1 isoform a [Homo sapiens]
          Length = 834

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 80  PDNEQNILWGLPLQY----GWQYRTGRLADPTRRT 110
           P    N+LW  PL +    GWQ +T R   P R++
Sbjct: 344 PGAPPNVLWQTPLAWQNPSGWQNQTARQTPPARQS 378


>gi|52632379 melanoma antigen family D, 1 isoform b [Homo sapiens]
          Length = 778

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 80  PDNEQNILWGLPLQY----GWQYRTGRLADPTRRT 110
           P    N+LW  PL +    GWQ +T R   P R++
Sbjct: 288 PGAPPNVLWQTPLAWQNPSGWQNQTARQTPPARQS 322


>gi|52632377 melanoma antigen family D, 1 isoform b [Homo sapiens]
          Length = 778

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 80  PDNEQNILWGLPLQY----GWQYRTGRLADPTRRT 110
           P    N+LW  PL +    GWQ +T R   P R++
Sbjct: 288 PGAPPNVLWQTPLAWQNPSGWQNQTARQTPPARQS 322


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,149,261
Number of Sequences: 37866
Number of extensions: 547774
Number of successful extensions: 1105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 8
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.