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Search of human proteins with 56847630
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56847630 transmembrane protein 89 [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56847630 transmembrane protein 89 [Homo sapiens] 333 4e-92
gi|154937380 hypothetical protein LOC642475 [Homo sapiens] 32 0.23
gi|31542756 progestin and adipoQ receptor family member IV [Homo... 29 1.5
gi|239756199 PREDICTED: hypothetical protein [Homo sapiens] 27 5.6
gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1 pr... 27 5.6
gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1 p... 27 5.6
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 27 5.6
gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5 pr... 27 7.4
gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2 pr... 27 7.4
gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3 p... 27 7.4
gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3 pr... 27 7.4
gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2 p... 27 7.4
gi|126517478 peroxidasin homolog-like [Homo sapiens] 27 7.4
gi|239754026 PREDICTED: hypothetical protein [Homo sapiens] 27 9.6
gi|239748557 PREDICTED: hypothetical protein XP_002346722 [Homo ... 27 9.6
gi|239742540 PREDICTED: hypothetical protein XP_002342571 [Homo ... 27 9.6
gi|17738287 secretory carrier membrane protein 4 [Homo sapiens] 27 9.6
>gi|56847630 transmembrane protein 89 [Homo sapiens]
Length = 159
Score = 333 bits (854), Expect = 4e-92
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MLHVLASLPLLLLLVTSASTHAWSRPLWYQVGLDLQPWGCQPKSVEGCRGGLSCPGYWLG 60
MLHVLASLPLLLLLVTSASTHAWSRPLWYQVGLDLQPWGCQPKSVEGCRGGLSCPGYWLG
Sbjct: 1 MLHVLASLPLLLLLVTSASTHAWSRPLWYQVGLDLQPWGCQPKSVEGCRGGLSCPGYWLG 60
Query: 61 PGASRIYPVAAVMITTTMLMICRKILQGRRRSQATKGEHPQVTTEPCGPWKRRAPISDHT 120
PGASRIYPVAAVMITTTMLMICRKILQGRRRSQATKGEHPQVTTEPCGPWKRRAPISDHT
Sbjct: 61 PGASRIYPVAAVMITTTMLMICRKILQGRRRSQATKGEHPQVTTEPCGPWKRRAPISDHT 120
Query: 121 LLRGVLHMLDALLVHIEGHLRHLATQRQIQIKGTSTQSG 159
LLRGVLHMLDALLVHIEGHLRHLATQRQIQIKGTSTQSG
Sbjct: 121 LLRGVLHMLDALLVHIEGHLRHLATQRQIQIKGTSTQSG 159
>gi|154937380 hypothetical protein LOC642475 [Homo sapiens]
Length = 719
Score = 32.0 bits (71), Expect = 0.23
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 105 EPCGPWKRRAPISDHTLLRGVLHMLDALLVHIEGHLRHL 143
E G W+R + HT L GVL + A++ H + HLR L
Sbjct: 325 EQAGGWRRL--VGAHTHLEGVLLLASAMVAHADHHLRGL 361
>gi|31542756 progestin and adipoQ receptor family member IV [Homo
sapiens]
Length = 273
Score = 29.3 bits (64), Expect = 1.5
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 37 PWGCQPKSVEGCRGGLSCPGYWLGPGASRIYPV-------AAVMITTTMLMICRKILQGR 89
PWG K +G GG C P S +Y + +AV L +C L
Sbjct: 71 PWGQLGK--DGWLGGTHCVACLAPPAGSVLYHLFMCHQGGSAVYARLLALDMCGVCLVN- 127
Query: 90 RRSQATKGEHPQV-TTEPCGPWKRRAPISDHTLLRGV 125
T G P + T C PW R A + +T+L GV
Sbjct: 128 -----TLGALPIIHCTLACRPWLRPAALVGYTVLSGV 159
>gi|239756199 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 27.3 bits (59), Expect = 5.6
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 21 HAWSRPLWYQVGLDLQPWGCQPKSVEGCRGGLSCPGYWLGPGASRIYPVAAVMITTTMLM 80
H+W + + + L P CQ S GC G L G+ G G R V++
Sbjct: 83 HSWRQRTFKE----LLPLKCQILSSHGCAGHLQGSGFHSGRGCWR-----RVLLRRGR-- 131
Query: 81 ICRKILQGRRRSQATKGEHPQVTTEPCGPWKRRAPIS 117
C R ++G+H Q +T W P+S
Sbjct: 132 -CGGWAGDSRAGPESQGQHTQPSTHLDQQWGCPKPVS 167
>gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1
precursor [Homo sapiens]
Length = 252
Score = 27.3 bits (59), Expect = 5.6
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 55 PGYWLGPGA---SRIYPVAAVMITTTMLMICRKI-LQGRRRSQAT---KGEHPQVTTEPC 107
P YW+ PG + PV + IT ++ +C + L+G+ R++ + P PC
Sbjct: 147 PFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQYRLRGKLRAEIENLHRTFDPHFLRVPC 206
Query: 108 GPWK 111
WK
Sbjct: 207 --WK 208
>gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1
precursor [Homo sapiens]
Length = 247
Score = 27.3 bits (59), Expect = 5.6
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 55 PGYWLGPGA---SRIYPVAAVMITTTMLMICRKI-LQGRRRSQAT---KGEHPQVTTEPC 107
P YW+ PG + PV + IT ++ +C + L+G+ R++ + P PC
Sbjct: 147 PFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQYRLRGKLRAEIENLHRTFDPHFLRVPC 206
Query: 108 GPWK 111
WK
Sbjct: 207 --WK 208
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 27.3 bits (59), Expect = 5.6
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 37 PWGCQPKSVEGCRGGLSCPGYWLGPGASRIYPVAAVMITTTMLMICRKILQGRRRSQATK 96
P P + G GL P +L PG P + ++ + + +R+ + TK
Sbjct: 2606 PVAFNPFLIPGVSPGLIYPSMFLSPGMGMALPAMQQARHSEIVGLESQ----KRKKKKTK 2661
Query: 97 GEHPQVTTEPCGPWKRRAPISD 118
G++P EP P R P D
Sbjct: 2662 GDNPNSHPEP-APSCEREPSGD 2682
>gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5
precursor [Homo sapiens]
Length = 213
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 55 PGYWLGPGA---SRIYPVAAVMITTTMLMICRKI-LQGRRRSQ 93
P YW+ PG + PV + IT ++ +C + L+G+ R++
Sbjct: 147 PFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQYRLRGKLRAE 189
>gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2
precursor [Homo sapiens]
Length = 206
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 55 PGYWLGPGA---SRIYPVAAVMITTTMLMICRKI-LQGRRRSQ 93
P YW+ PG + PV + IT ++ +C + L+G+ R++
Sbjct: 147 PFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQYRLRGKLRAE 189
>gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3
precursor [Homo sapiens]
Length = 224
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 55 PGYWLGPGA---SRIYPVAAVMITTTMLMICRKI-LQGRRRSQ 93
P YW+ PG + PV + IT ++ +C + L+G+ R++
Sbjct: 147 PFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQYRLRGKLRAE 189
>gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3
precursor [Homo sapiens]
Length = 229
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 55 PGYWLGPGA---SRIYPVAAVMITTTMLMICRKI-LQGRRRSQ 93
P YW+ PG + PV + IT ++ +C + L+G+ R++
Sbjct: 147 PFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQYRLRGKLRAE 189
>gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2
precursor [Homo sapiens]
Length = 208
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 55 PGYWLGPGA---SRIYPVAAVMITTTMLMICRKI-LQGRRRSQ 93
P YW+ PG + PV + IT ++ +C + L+G+ R++
Sbjct: 147 PFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQYRLRGKLRAE 189
>gi|126517478 peroxidasin homolog-like [Homo sapiens]
Length = 1463
Score = 26.9 bits (58), Expect = 7.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 88 GRRRSQATKGEHPQVTTEPCGPWKRRAPISDHTLLRGVLHMLDALLVHI-EGHL 140
G R + +G +P V + A HTL+ +L+ L+A L I EGHL
Sbjct: 1026 GTRMLRGYRGYNPNVNAGIINSFATAAFRFGHTLINPILYRLNATLGEISEGHL 1079
>gi|239754026 PREDICTED: hypothetical protein [Homo sapiens]
Length = 422
Score = 26.6 bits (57), Expect = 9.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 86 LQGRRRSQATKGEHPQVTTEP-------CGPWKRRAPISDHTLLRGVLH 127
L G+ R T+ + P+ ++ P C P + R P+S T L G H
Sbjct: 147 LHGQGRGSLTEPKEPRRSSPPPRERGWECRPGRGRGPVSKGTCLAGRKH 195
>gi|239748557 PREDICTED: hypothetical protein XP_002346722 [Homo
sapiens]
Length = 422
Score = 26.6 bits (57), Expect = 9.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 86 LQGRRRSQATKGEHPQVTTEP-------CGPWKRRAPISDHTLLRGVLH 127
L G+ R T+ + P+ ++ P C P + R P+S T L G H
Sbjct: 147 LHGQGRGSLTEPKEPRRSSPPPRERGWECRPGRGRGPVSKGTCLAGRKH 195
>gi|239742540 PREDICTED: hypothetical protein XP_002342571 [Homo
sapiens]
Length = 422
Score = 26.6 bits (57), Expect = 9.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 86 LQGRRRSQATKGEHPQVTTEP-------CGPWKRRAPISDHTLLRGVLH 127
L G+ R T+ + P+ ++ P C P + R P+S T L G H
Sbjct: 147 LHGQGRGSLTEPKEPRRSSPPPRERGWECRPGRGRGPVSKGTCLAGRKH 195
>gi|17738287 secretory carrier membrane protein 4 [Homo sapiens]
Length = 229
Score = 26.6 bits (57), Expect = 9.6
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 47 GCRGGLSCPGYW-LGPGASRIYPVAAVMITTTMLMICRKILQGRRRSQATKGEHPQVTTE 105
G G LS G++ PGA+ + + A+M + + M+ I++ R + G + TE
Sbjct: 130 GACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGGSFQKAQTE 189
Query: 106 -PCGPWK 111
G W+
Sbjct: 190 WNTGTWR 196
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,473,391
Number of Sequences: 37866
Number of extensions: 282710
Number of successful extensions: 711
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 17
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.