Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMEM89 Sequence: fasta or formatted (159aa) NCBI GI: 56847630
Description:

transmembrane protein 89

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         10           2
 C cysteine            3.1          5           1
 D aspartate           1.9          3           1
 E glutamate           2.5          4           1
 F phenylalanine       0.0          0           0
 G glycine             9.4         15           2
 H histidine           5.0          8           1
 I isoleucine          5.0          8           1
 K lysine              3.1          5           1
 L leucine            14.5         23           5
 M methionine          3.1          5           1
 N asparagine          0.0          0           0
 P proline             6.9         11           1
 Q glutamine           6.3         10           1
 R arginine            7.5         12           3
 S serine              6.9         11           1
 T threonine           7.5         12           3
 V valine              5.7          9           1
 W tryptophan          3.1          5           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 89 
C8orf73               0.023   hypothetical protein LOC642475 
PAQR4                 0.013   progestin and adipoQ receptor family member IV [Homo...
LOC100292196          0.006   PREDICTED: hypothetical protein 
MOG                   0.006   myelin oligodendrocyte glycoprotein isoform beta1 pr...
MOG                   0.006   myelin oligodendrocyte glycoprotein isoform alpha1 p...
CHD6                  0.006   chromodomain helicase DNA binding protein 6 
MOG                   0.006   myelin oligodendrocyte glycoprotein isoform beta5 pr...
MOG                   0.006   myelin oligodendrocyte glycoprotein isoform beta2 pr...
MOG                   0.006   myelin oligodendrocyte glycoprotein isoform alpha3 p...
MOG                   0.006   myelin oligodendrocyte glycoprotein isoform beta3 pr...
MOG                   0.006   myelin oligodendrocyte glycoprotein isoform alpha2 p...
PXDNL                 0.006   peroxidasin homolog-like 
LOC100292294          0.006   PREDICTED: hypothetical protein 
LOC100289924          0.006   PREDICTED: hypothetical protein XP_002346722 
LOC100287776          0.006   PREDICTED: hypothetical protein XP_002342571 
SCAMP4                0.006   secretory carrier membrane protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press