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Search of human proteins with 56682945
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56682945 spindlin-like protein 2 [Homo sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56682949 spindlin-like protein 2 [Homo sapiens] 528 e-150
gi|56682947 spindlin-like protein 2 [Homo sapiens] 528 e-150
gi|56682945 spindlin-like protein 2 [Homo sapiens] 528 e-150
gi|117606320 spindlin family, member 2 [Homo sapiens] 527 e-150
gi|112293285 spindlin [Homo sapiens] 416 e-116
gi|115527078 spindlin family, member 3 [Homo sapiens] 411 e-115
gi|108796661 spindlin family, member 4 [Homo sapiens] 341 3e-94
gi|111955326 MLX interacting protein [Homo sapiens] 33 0.25
gi|118918411 zinc finger protein 777 [Homo sapiens] 31 1.2
gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens] 30 2.7
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 30 2.7
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 29 4.6
gi|189491742 ataxin 7 isoform b [Homo sapiens] 28 6.1
gi|4506797 ataxin 7 isoform a [Homo sapiens] 28 6.1
gi|12232397 SMAD specific E3 ubiquitin protein ligase 2 [Homo sa... 28 7.9
>gi|56682949 spindlin-like protein 2 [Homo sapiens]
Length = 258
Score = 528 bits (1361), Expect = e-150
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE 60
MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE
Sbjct: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE 60
Query: 61 GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS 120
GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS
Sbjct: 61 GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS 120
Query: 121 DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD 180
DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD
Sbjct: 121 DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD 180
Query: 181 YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF 240
YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF
Sbjct: 181 YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF 240
Query: 241 IKFDDDFHIYVYDLVKKS 258
IKFDDDFHIYVYDLVKKS
Sbjct: 241 IKFDDDFHIYVYDLVKKS 258
>gi|56682947 spindlin-like protein 2 [Homo sapiens]
Length = 258
Score = 528 bits (1361), Expect = e-150
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE 60
MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE
Sbjct: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE 60
Query: 61 GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS 120
GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS
Sbjct: 61 GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS 120
Query: 121 DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD 180
DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD
Sbjct: 121 DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD 180
Query: 181 YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF 240
YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF
Sbjct: 181 YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF 240
Query: 241 IKFDDDFHIYVYDLVKKS 258
IKFDDDFHIYVYDLVKKS
Sbjct: 241 IKFDDDFHIYVYDLVKKS 258
>gi|56682945 spindlin-like protein 2 [Homo sapiens]
Length = 258
Score = 528 bits (1361), Expect = e-150
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE 60
MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE
Sbjct: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE 60
Query: 61 GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS 120
GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS
Sbjct: 61 GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS 120
Query: 121 DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD 180
DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD
Sbjct: 121 DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD 180
Query: 181 YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF 240
YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF
Sbjct: 181 YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF 240
Query: 241 IKFDDDFHIYVYDLVKKS 258
IKFDDDFHIYVYDLVKKS
Sbjct: 241 IKFDDDFHIYVYDLVKKS 258
>gi|117606320 spindlin family, member 2 [Homo sapiens]
Length = 258
Score = 527 bits (1357), Expect = e-150
Identities = 257/258 (99%), Positives = 257/258 (99%)
Query: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE 60
MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE
Sbjct: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE 60
Query: 61 GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS 120
GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS
Sbjct: 61 GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS 120
Query: 121 DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD 180
DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD
Sbjct: 121 DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD 180
Query: 181 YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF 240
YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVE KPSVYF
Sbjct: 181 YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVETKPSVYF 240
Query: 241 IKFDDDFHIYVYDLVKKS 258
IKFDDDFHIYVYDLVKKS
Sbjct: 241 IKFDDDFHIYVYDLVKKS 258
>gi|112293285 spindlin [Homo sapiens]
Length = 262
Score = 416 bits (1068), Expect = e-116
Identities = 202/263 (76%), Positives = 226/263 (85%), Gaps = 6/263 (2%)
Query: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS 55
MKTP + GQ++RA AG A SANM KK+ S KK R +P SQPRRNIVGCRI
Sbjct: 1 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ 59
Query: 56 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA 115
HGWKEG+ P+TQWKGTVLDQVP+NPSLYL+KYDG DCVYGLEL++DERV +L++L DRVA
Sbjct: 60 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA 119
Query: 116 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY 175
+S ISDA+LA+T+IGKAVEHMFE E GSKDEWRGMVLA+AP+M WFYITYEKDPVLYMY
Sbjct: 120 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY 179
Query: 176 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK 235
QLLDDYKEGDLRIMP+S++SPP EREPG VVD L+GK VEY KEDGSKR GMVIHQVEAK
Sbjct: 180 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK 239
Query: 236 PSVYFIKFDDDFHIYVYDLVKKS 258
PSVYFIKFDDDFHIYVYDLVK S
Sbjct: 240 PSVYFIKFDDDFHIYVYDLVKTS 262
>gi|115527078 spindlin family, member 3 [Homo sapiens]
Length = 258
Score = 411 bits (1057), Expect = e-115
Identities = 192/258 (74%), Positives = 220/258 (85%)
Query: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKE 60
MKTP + A GQ++R AG + S M K+K + KK R RP+SQPR NIVGCRI HGWK+
Sbjct: 1 MKTPFGKAAAGQRSRTGAGHGSVSVTMIKRKAAHKKHRSRPTSQPRGNIVGCRIQHGWKD 60
Query: 61 GDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHIS 120
GDEP+TQWKGTVLDQVP+NPSLYL+KYDG DCVYGLELHRDERV SL++L +RVASS IS
Sbjct: 61 GDEPLTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELHRDERVSSLEVLPNRVASSRIS 120
Query: 121 DANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDD 180
D +LA ++GKAVEH+FE E GSK+EWRGMVLAQAP+M WFYITYEKDPVLYMYQLLDD
Sbjct: 121 DTHLAEIMVGKAVEHIFETEEGSKNEWRGMVLAQAPVMNTWFYITYEKDPVLYMYQLLDD 180
Query: 181 YKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYF 240
YK+GDLRI+ +S++SP EREPG V+D L+GK VEY K+DGSKR GMVIHQVEAKPSVYF
Sbjct: 181 YKDGDLRILQDSNDSPLAEREPGEVIDSLVGKQVEYAKDDGSKRTGMVIHQVEAKPSVYF 240
Query: 241 IKFDDDFHIYVYDLVKKS 258
IKFDDDFHIYVYDLVK S
Sbjct: 241 IKFDDDFHIYVYDLVKTS 258
>gi|108796661 spindlin family, member 4 [Homo sapiens]
Length = 249
Score = 341 bits (875), Expect = 3e-94
Identities = 162/234 (69%), Positives = 198/234 (84%), Gaps = 2/234 (0%)
Query: 24 SANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKEGDEPITQWKGTVLDQVPINPSLY 83
SA + KK+ + +KQR +P+ RRNIVGCRI HGWKEG+EP+ QWKGTVL+QV + P+LY
Sbjct: 15 SAYLMKKRHTHRKQRRKPTFLTRRNIVGCRIQHGWKEGNEPVEQWKGTVLEQVSVKPTLY 74
Query: 84 LVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHISDANLANTIIGKAVEHMFEGEHGS 143
++KYDG D VYGLELHRD+RVL+L+IL +RV + I D+ LA+++IGKAVEH+FEGEHG+
Sbjct: 75 IIKYDGKDSVYGLELHRDKRVLALEILPERVPTPRI-DSRLADSLIGKAVEHVFEGEHGT 133
Query: 144 KDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDDYKEGDLRIMPESSESPPT-EREP 202
KDEW+GMVLA+AP+M WFYITYEKDPVLYMY LLDDYK+GDLRI+P+S+ PT E+EP
Sbjct: 134 KDEWKGMVLARAPVMDTWFYITYEKDPVLYMYTLLDDYKDGDLRIIPDSNYYFPTAEQEP 193
Query: 203 GGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK 256
G VVD L+GK VE+ K+DGSKR G+ IHQV AKPSVYFIKFDDD HIYVY LVK
Sbjct: 194 GEVVDSLVGKQVEHAKDDGSKRTGIFIHQVVAKPSVYFIKFDDDIHIYVYGLVK 247
>gi|111955326 MLX interacting protein [Homo sapiens]
Length = 919
Score = 33.1 bits (74), Expect = 0.25
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 113 RVASSHIS-DANLANTI-------IGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWF-- 162
+ +S H+S DA+L GK V ++ G K +WR + I +AW+
Sbjct: 114 KTSSCHLSIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQ 173
Query: 163 YITYEKDPVLYMYQLLDDYKEGDLRIMPES 192
Y+ K+PV + LD + D PE+
Sbjct: 174 YLEKRKNPVCHFVTPLDGSVDVDEHRRPEA 203
>gi|118918411 zinc finger protein 777 [Homo sapiens]
Length = 831
Score = 30.8 bits (68), Expect = 1.2
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 135 HMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDDYKEGDLRIMPES-- 192
H E E G+ EW+ + +M+ + D + L+ + G+ M E
Sbjct: 293 HFSEQEWGNLSEWQKELYKN--VMRGNYESLVSMDYAISKPDLMSQMERGERPTMQEQED 350
Query: 193 SESPPTEREPGGVVDGLIGKHVEYTKEDGSKRI 225
SE T +P DG++ K T ++GS+ +
Sbjct: 351 SEEGETPTDPSAAHDGIVIKIEVQTNDEGSESL 383
>gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]
Length = 1462
Score = 29.6 bits (65), Expect = 2.7
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 23/87 (26%)
Query: 159 KAWFYITYEKDPVLYMYQLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTK 218
K WF I K VLY Y +D + ES P L+G + K
Sbjct: 1382 KLWFVI---KGKVLYTYMASED---------KVALESMP-----------LLGFTIAPEK 1418
Query: 219 EDGSKRIGMVIHQVEAKPSVYFIKFDD 245
E+GS +G + H K Y K +D
Sbjct: 1419 EEGSSEVGPIFHLYHKKTLFYSFKAED 1445
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 29.6 bits (65), Expect = 2.7
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 9 AEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVG 51
+EG+++R+ R +GS + + + + K+RGRP + PR NI G
Sbjct: 1085 SEGRRSRSR--RYSGSDSDSISEGKRPKKRGRPRTIPRENIKG 1125
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 28.9 bits (63), Expect = 4.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 177 LLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIG 211
LL+D +EGDL E +E+P E+ G + L+G
Sbjct: 349 LLEDREEGDLGKASELAETPKEEKAEGAAMLELVG 383
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 28.5 bits (62), Expect = 6.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 6 AQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRR 47
A + G+ RAAA +A +++ Q++Q+ P QP+R
Sbjct: 6 ADDVRGEPRRAAAAAGGAAAAAARQQQQQQQQQQPPPPQPQR 47
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 28.5 bits (62), Expect = 6.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 6 AQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRR 47
A + G+ RAAA +A +++ Q++Q+ P QP+R
Sbjct: 6 ADDVRGEPRRAAAAAGGAAAAAARQQQQQQQQQQPPPPQPQR 47
>gi|12232397 SMAD specific E3 ubiquitin protein ligase 2 [Homo
sapiens]
Length = 748
Score = 28.1 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 82 LYLVKYDGIDCVYGLELHRDERVLSLKILSD-RVASSHISDANLANTIIGKAVEH 135
LYL+ ++ ++ YGL + + + +L+I D V H+S + I+G AV H
Sbjct: 442 LYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFH 496
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,262,885
Number of Sequences: 37866
Number of extensions: 469777
Number of successful extensions: 1373
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1316
Number of HSP's gapped (non-prelim): 16
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.