Search of human proteins with 56676377

Search of human proteins with 56676377

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56676377 tubulin polymerization-promoting protein family
member 3 [Homo sapiens]
         (176 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|56676377 tubulin polymerization-promoting protein family memb...   353   4e-98
gi|56676375 tubulin polymerization-promoting protein family memb...   353   4e-98
gi|5902018 tubulin polymerization promoting protein [Homo sapiens]    238   2e-63
gi|226491350 tubulin polymerization-promoting protein family mem...   224   4e-59
gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens]    32   0.22 
gi|88759348 ring finger protein 219 [Homo sapiens]                     29   2.4  
gi|4507617 fast skeletal muscle troponin C [Homo sapiens]              28   3.1  
gi|119120877 zinc finger protein 721 [Homo sapiens]                    28   4.1  
gi|221219020 NYD-SP11 protein [Homo sapiens]                           27   7.0  
gi|224809302 xeroderma pigmentosum, complementation group C isof...    27   9.2  
gi|224809295 xeroderma pigmentosum, complementation group C isof...    27   9.2  

>gi|56676377 tubulin polymerization-promoting protein family member
           3 [Homo sapiens]
          Length = 176

 Score =  353 bits (906), Expect = 4e-98
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MAASTDMAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFS 60
           MAASTDMAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFS
Sbjct: 1   MAASTDMAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFS 60

Query: 61  KVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGG 120
           KVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGG
Sbjct: 61  KVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGG 120

Query: 121 AVDRLTDTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVKK 176
           AVDRLTDTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVKK
Sbjct: 121 AVDRLTDTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVKK 176


>gi|56676375 tubulin polymerization-promoting protein family member
           3 [Homo sapiens]
          Length = 176

 Score =  353 bits (906), Expect = 4e-98
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MAASTDMAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFS 60
           MAASTDMAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFS
Sbjct: 1   MAASTDMAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFS 60

Query: 61  KVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGG 120
           KVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGG
Sbjct: 61  KVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGG 120

Query: 121 AVDRLTDTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVKK 176
           AVDRLTDTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVKK
Sbjct: 121 AVDRLTDTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVKK 176


>gi|5902018 tubulin polymerization promoting protein [Homo sapiens]
          Length = 219

 Score =  238 bits (607), Expect = 2e-63
 Identities = 113/174 (64%), Positives = 144/174 (82%)

Query: 2   AASTDMAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSK 61
           AAS +++ LEE+FR+FA+HGD +A+G+EM+GKNW+KLCKDC+V DG++VT TDVDIVFSK
Sbjct: 43  AASPELSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSK 102

Query: 62  VKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGGA 121
           +KGKS R I +E+F++ALEELA KRFK KS EEA   + +L+ GK P   GVTKA +   
Sbjct: 103 IKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPT 162

Query: 122 VDRLTDTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVK 175
           V RLTDT+++TGSHKERFD SGKGKG AGR D++D+SGYVS YK+AGTYD KV+
Sbjct: 163 VSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQ 216


>gi|226491350 tubulin polymerization-promoting protein family member
           2 [Homo sapiens]
          Length = 170

 Score =  224 bits (570), Expect = 4e-59
 Identities = 105/165 (63%), Positives = 133/165 (80%)

Query: 11  EESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVI 70
           E++F +FA  G+  +SG EMN KN++KLCKDC + DGK+VT TDVDIVFSKVK K+AR I
Sbjct: 6   EKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTI 65

Query: 71  NYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSR 130
            +++FK+A++EL  KRFKGKS +E  + I  L+ GK+PA  G TKA T GAVDRLTDTS+
Sbjct: 66  TFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTDTSK 125

Query: 131 YTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVK 175
           YTG+HKERFDESGKGKGIAGR+++ D++GYVS YK +GTYD K K
Sbjct: 126 YTGTHKERFDESGKGKGIAGREEMTDNTGYVSGYKGSGTYDKKTK 170


>gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens]
          Length = 1012

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 58  VFSKVKGKSARVINYEEFKKALEELATKRFKGKSKEEAF 96
           + S +KG+   ++ YEE ++ LEE A K F     +E+F
Sbjct: 809 LLSNIKGRKITLLTYEEIERLLEEEAVKEFIEPEIDESF 847


>gi|88759348 ring finger protein 219 [Homo sapiens]
          Length = 726

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 24  KASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSAR 68
           K S +E    N   +C+    ADGK   G++ D+V SK +G SAR
Sbjct: 258 KNSSEEKEAMN--SICQTALSADGKGSKGSEEDVV-SKNQGDSAR 299


>gi|4507617 fast skeletal muscle troponin C [Homo sapiens]
          Length = 160

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 47 GKSVTGTDVDIVFSKVKGKSARVINYEEFKKALEELATKRFKGKSKEE 94
          G++ T  ++D +  +V    +  I++EEF   +     +  KGKS+EE
Sbjct: 48 GQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEE 95


>gi|119120877 zinc finger protein 721 [Homo sapiens]
          Length = 923

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 21/152 (13%)

Query: 9   GLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADG------KSVTGTDVDIVFSKV 62
           G+E+SF K  +    K     +  +   K    CKV  G      K ++ T      SK+
Sbjct: 26  GIEDSFHKLILRRYEKCGHDNLQLRKGCKSMNVCKVQKGVYNGINKCLSNTQ-----SKI 80

Query: 63  KGKSARVINYEEF----KKALEELATKRFKGKSKEEAFDAICQLV------AGKEPANVG 112
              +ARV  + +F    K        K FK     ++F     L       AG++P    
Sbjct: 81  FQCNARVKVFSKFANSNKDKTRHTGEKHFKCNECGKSFQKFSDLTQHKGIHAGEKPYTCE 140

Query: 113 VTKAKTGGAVDRLTDTSRYTGSHKERFDESGK 144
                 G   D       +TG    + +E GK
Sbjct: 141 ERGKDFGWYTDLNQHKKIHTGEKPYKCEECGK 172


>gi|221219020 NYD-SP11 protein [Homo sapiens]
          Length = 2873

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 61   KVKGKSARVINYEEFKKALEELATKRFK 88
            K KGK A+VIN E     +E+  TK+ K
Sbjct: 1193 KKKGKEAKVINEETTPPVMEQPVTKKVK 1220


>gi|224809302 xeroderma pigmentosum, complementation group C isoform
           2 [Homo sapiens]
          Length = 903

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 23  PKASGQEMNGKNWAKLCKDCKVADGKSVTGTD 54
           P AS    + K   K+C D + A+ +S+ G D
Sbjct: 461 PAASSSSSSSKRGKKMCSDGEKAEKRSIAGID 492


>gi|224809295 xeroderma pigmentosum, complementation group C isoform
           1 [Homo sapiens]
          Length = 940

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 23  PKASGQEMNGKNWAKLCKDCKVADGKSVTGTD 54
           P AS    + K   K+C D + A+ +S+ G D
Sbjct: 498 PAASSSSSSSKRGKKMCSDGEKAEKRSIAGID 529


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,393,513
Number of Sequences: 37866
Number of extensions: 261609
Number of successful extensions: 522
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 11
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.