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Search of human proteins with 56605998
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56605998 EP300 interacting inhibitor of differentiation 3
[Homo sapiens]
(333 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56605998 EP300 interacting inhibitor of differentiation 3 [Ho... 667 0.0
gi|8923009 non-SMC element 4 homolog A [Homo sapiens] 314 6e-86
gi|4507373 beta-tubulin cofactor C [Homo sapiens] 32 0.79
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 30 3.0
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 30 3.0
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 30 3.0
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 30 3.0
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 30 3.0
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 30 3.0
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 30 3.0
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 30 3.0
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 30 3.0
gi|239582759 Acr formation associated factor isoform 2 [Homo sap... 29 5.1
gi|239582757 Acr formation associated factor isoform 1 [Homo sap... 29 5.1
>gi|56605998 EP300 interacting inhibitor of differentiation 3 [Homo
sapiens]
Length = 333
Score = 667 bits (1720), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MKMDVSVRAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVS 60
MKMDVSVRAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVS
Sbjct: 1 MKMDVSVRAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVS 60
Query: 61 SANNSLTEALEEANVLFDGVSRTREAALDARFLVMASDLGKEKAKQLNSDMNFFNQLAFC 120
SANNSLTEALEEANVLFDGVSRTREAALDARFLVMASDLGKEKAKQLNSDMNFFNQLAFC
Sbjct: 61 SANNSLTEALEEANVLFDGVSRTREAALDARFLVMASDLGKEKAKQLNSDMNFFNQLAFC 120
Query: 121 DFLFLFVGLNWMEGDPDKLSDCDDSIALSFWKAIEKEATSWMVKAETFHFVFGSFKLERS 180
DFLFLFVGLNWMEGDPDKLSDCDDSIALSFWKAIEKEATSWMVKAETFHFVFGSFKLERS
Sbjct: 121 DFLFLFVGLNWMEGDPDKLSDCDDSIALSFWKAIEKEATSWMVKAETFHFVFGSFKLERS 180
Query: 181 APKPRLEHQKKVRKMEENGNMPTKLQKLDLSSYPEATEKNVERILGLLQTYFRKYPDTPV 240
APKPRLEHQKKVRKMEENGNMPTKLQKLDLSSYPEATEKNVERILGLLQTYFRKYPDTPV
Sbjct: 181 APKPRLEHQKKVRKMEENGNMPTKLQKLDLSSYPEATEKNVERILGLLQTYFRKYPDTPV 240
Query: 241 SYFEFVIDPNSFSRTVENIFYVSFIVRDGFARIRLDEDRLPILEPMNVNQMGEGNDSSCH 300
SYFEFVIDPNSFSRTVENIFYVSFIVRDGFARIRLDEDRLPILEPMNVNQMGEGNDSSCH
Sbjct: 241 SYFEFVIDPNSFSRTVENIFYVSFIVRDGFARIRLDEDRLPILEPMNVNQMGEGNDSSCH 300
Query: 301 GRKQGVISLTLQEWKNIVAAFEISEAMITYSSY 333
GRKQGVISLTLQEWKNIVAAFEISEAMITYSSY
Sbjct: 301 GRKQGVISLTLQEWKNIVAAFEISEAMITYSSY 333
>gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
Length = 385
Score = 314 bits (805), Expect = 6e-86
Identities = 166/317 (52%), Positives = 225/317 (70%), Gaps = 5/317 (1%)
Query: 18 SGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLTEALEEANVLF 77
SG+ +DP LE AD+ CR IR QYR L+ V+QNREDI++ A + LTE LEEAN LF
Sbjct: 63 SGDEMMDPASLEAEADQGLCRQIRHQYRALINSVQQNREDILN-AGDKLTEVLEEANTLF 121
Query: 78 DGVSRTREAALDARFLVMASDLGKEKAKQLNSDMNFFNQLAFCDFLFLFVGLNWMEGDP- 136
+ VSR REA LDA FLV+ASDLG EKAKQL SD++ F+ L + + L +G+N +E +
Sbjct: 122 NEVSRAREAVLDAHFLVLASDLGIEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAEEL 181
Query: 137 --DKLSDCDDSIALSFWKAIEKEATSWMVKAETFHFVFGSFKLERSAPKPRLEHQKKVRK 194
D+ S + I WK + A + K TFHF+ GS E PKPR++ +KV
Sbjct: 182 IRDEDSPDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGSIYGECPVPKPRVDRPRKVPV 241
Query: 195 MEENGNMPTKLQKLDLSSYPEATEKNVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSR 254
++E MP +L++++ S+ EATEK VERILGLLQTYFR+ PDTP+S+F+FV+DP+SF R
Sbjct: 242 IQEERAMPAQLRRME-ESHQEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPR 300
Query: 255 TVENIFYVSFIVRDGFARIRLDEDRLPILEPMNVNQMGEGNDSSCHGRKQGVISLTLQEW 314
TVENIF+VSFI+RDGFARIRLD+DRLP++EP+++N+ EG + + R QG+I+L+ ++W
Sbjct: 301 TVENIFHVSFIIRDGFARIRLDQDRLPVIEPVSINEENEGFEHNTQVRNQGIIALSYRDW 360
Query: 315 KNIVAAFEISEAMITYS 331
+ IV FEISE +IT S
Sbjct: 361 EEIVKTFEISEPVITPS 377
>gi|4507373 beta-tubulin cofactor C [Homo sapiens]
Length = 346
Score = 32.0 bits (71), Expect = 0.79
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 163 VKAETFHFVFGSFKLERSAPKPRLEHQKKVRKMEENGNMPTKLQKL 208
V+ E HF +F ER+A + LE + V ++EE + LQKL
Sbjct: 52 VEKENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKL 97
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 30.0 bits (66), Expect = 3.0
Identities = 49/242 (20%), Positives = 107/242 (44%), Gaps = 43/242 (17%)
Query: 11 GCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLTEAL 70
G D + + +D LLE E++C S++++ ++ +Q ED V+ ++ E L
Sbjct: 66 GTGDIIKALTERLDALLLEKAETEQQCLSLKKENIKM----KQEVEDSVTKMGDAHKE-L 120
Query: 71 EEANVLFDGV---SRTREAALDARFLVMASDLGKEKAKQLNSDMNFFNQLAFCDFLFLFV 127
E++++ + + A+ +++ ++L K+ + +N+ + QL F
Sbjct: 121 EQSHINYVKEIENLKNELMAVRSKYSEDKANLQKQLEEAMNTQLELSEQLKF-------- 172
Query: 128 GLNWMEGDPDKLSDCDDSIALSFWKAI------------EKEAT----SWMVKAETFHFV 171
N E + KL + + I F + I EK+ T +++A + H+
Sbjct: 173 -QNNSEDNVKKLQEEIEKIRPGFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQ 231
Query: 172 FGSFKLERSAPKPRLEHQKKVRKM--------EENGNMPTKLQKL--DLSSYPEATEKNV 221
L+ + + HQ++V+++ +E+ KL +L +L EA+EKN+
Sbjct: 232 KNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQCEASEKNI 291
Query: 222 ER 223
++
Sbjct: 292 QK 293
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 8 RAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLT 67
R G +D V+ ++L L A EK + + + + +R N ED + S +
Sbjct: 1908 RQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKEQAEL 1967
Query: 68 EALEEANVLFDGVSRTREA 86
EA + + + R REA
Sbjct: 1968 EAARQRQLAAEEERRRREA 1986
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 8 RAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLT 67
R G +D V+ ++L L A EK + + + + +R N ED + S +
Sbjct: 1912 RQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKEQAEL 1971
Query: 68 EALEEANVLFDGVSRTREA 86
EA + + + R REA
Sbjct: 1972 EAARQRQLAAEEERRRREA 1990
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 8 RAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLT 67
R G +D V+ ++L L A EK + + + + +R N ED + S +
Sbjct: 1908 RQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKEQAEL 1967
Query: 68 EALEEANVLFDGVSRTREA 86
EA + + + R REA
Sbjct: 1968 EAARQRQLAAEEERRRREA 1986
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 8 RAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLT 67
R G +D V+ ++L L A EK + + + + +R N ED + S +
Sbjct: 1876 RQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKEQAEL 1935
Query: 68 EALEEANVLFDGVSRTREA 86
EA + + + R REA
Sbjct: 1936 EAARQRQLAAEEERRRREA 1954
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 8 RAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLT 67
R G +D V+ ++L L A EK + + + + +R N ED + S +
Sbjct: 2045 RQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKEQAEL 2104
Query: 68 EALEEANVLFDGVSRTREA 86
EA + + + R REA
Sbjct: 2105 EAARQRQLAAEEERRRREA 2123
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 8 RAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLT 67
R G +D V+ ++L L A EK + + + + +R N ED + S +
Sbjct: 1886 RQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKEQAEL 1945
Query: 68 EALEEANVLFDGVSRTREA 86
EA + + + R REA
Sbjct: 1946 EAARQRQLAAEEERRRREA 1964
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 8 RAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLT 67
R G +D V+ ++L L A EK + + + + +R N ED + S +
Sbjct: 1894 RQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKEQAEL 1953
Query: 68 EALEEANVLFDGVSRTREA 86
EA + + + R REA
Sbjct: 1954 EAARQRQLAAEEERRRREA 1972
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 8 RAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLT 67
R G +D V+ ++L L A EK + + + + +R N ED + S +
Sbjct: 1935 RQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAEDTLRSKEQAEL 1994
Query: 68 EALEEANVLFDGVSRTREA 86
EA + + + R REA
Sbjct: 1995 EAARQRQLAAEEERRRREA 2013
>gi|239582759 Acr formation associated factor isoform 2 [Homo
sapiens]
Length = 265
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 168 FHFVFGSFKLERSAPKPRLEHQKKVRKMEENGNMPTKLQKLDLSSYPEATEKN 220
F F+ G F L+ S KP +E V + E+ N + + +Y A EKN
Sbjct: 6 FIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKN 58
>gi|239582757 Acr formation associated factor isoform 1 [Homo
sapiens]
Length = 294
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 168 FHFVFGSFKLERSAPKPRLEHQKKVRKMEENGNMPTKLQKLDLSSYPEATEKN 220
F F+ G F L+ S KP +E V + E+ N + + +Y A EKN
Sbjct: 6 FIFIPGVFSLKSSTLKPTIEALPNVLPLNEDVNKQEEKNEDHTPNYAPANEKN 58
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,706,297
Number of Sequences: 37866
Number of extensions: 492403
Number of successful extensions: 1375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1359
Number of HSP's gapped (non-prelim): 15
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.