Search of human proteins with 56549675

Search of human proteins with 56549675

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56549675 solute carrier family 41, member 3 isoform 3 [Homo
sapiens]
         (471 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|56549675 solute carrier family 41, member 3 isoform 3 [Homo s...   932   0.0  
gi|56549673 solute carrier family 41, member 3 isoform 1 [Homo s...   914   0.0  
gi|56549671 solute carrier family 41, member 3 isoform 2 [Homo s...   809   0.0  
gi|56549677 solute carrier family 41, member 3 isoform 4 [Homo s...   645   0.0  
gi|51702206 solute carrier family 41 member 1 [Homo sapiens]          380   e-105
gi|207444687 solute carrier family 41, member 2 [Homo sapiens]        332   6e-91
gi|109255241 natural resistance-associated macrophage protein 1 ...    33   0.43 
gi|108796649 hypothetical protein LOC283677 [Homo sapiens]             33   0.73 
gi|4759162 SRY-box 14 [Homo sapiens]                                   33   0.73 
gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens neandert...    32   1.2  
gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens]               32   1.2  
gi|11141861 claudin 9 [Homo sapiens]                                   30   4.7  
gi|4557739 soluble mannose-binding lectin precursor [Homo sapiens]     30   4.7  
gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens]     30   6.2  
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo...    29   8.1  
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo...    29   8.1  
gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s...    29   8.1  
gi|30581137 phosphatidylinositol glycan anchor biosynthesis, cla...    29   8.1  

>gi|56549675 solute carrier family 41, member 3 isoform 3 [Homo
           sapiens]
          Length = 471

 Score =  932 bits (2408), Expect = 0.0
 Identities = 471/471 (100%), Positives = 471/471 (100%)

Query: 1   MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRE 60
           MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRE
Sbjct: 1   MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRE 60

Query: 61  TAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQANTGQIDDPQEQHRVISSNLALIQVQATV 120
           TAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQANTGQIDDPQEQHRVISSNLALIQVQATV
Sbjct: 61  TAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQANTGQIDDPQEQHRVISSNLALIQVQATV 120

Query: 121 VGLLAAVAALLLGVVSREEVDVAKVELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVN 180
           VGLLAAVAALLLGVVSREEVDVAKVELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVN
Sbjct: 121 VGLLAAVAALLLGVVSREEVDVAKVELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVN 180

Query: 181 PDNIATPIAASLGDLITLSILALVSSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSP 240
           PDNIATPIAASLGDLITLSILALVSSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSP
Sbjct: 181 PDNIATPIAASLGDLITLSILALVSSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSP 240

Query: 241 PIVKILKFGWFPIILAMVISSFGGLILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSR 300
           PIVKILKFGWFPIILAMVISSFGGLILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSR
Sbjct: 241 PIVKILKFGWFPIILAMVISSFGGLILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSR 300

Query: 301 ISTYLHMWSAPGVLPLQMKKFWPNPCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLV 360
           ISTYLHMWSAPGVLPLQMKKFWPNPCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLV
Sbjct: 301 ISTYLHMWSAPGVLPLQMKKFWPNPCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLV 360

Query: 361 EGQSVINSQTFVVLYLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLG 420
           EGQSVINSQTFVVLYLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLG
Sbjct: 361 EGQSVINSQTFVVLYLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLG 420

Query: 421 SSSVGHTAAVPRRCTASPGWGLIQPFICTQHLIVSLLSFYFPFCLLAKTSI 471
           SSSVGHTAAVPRRCTASPGWGLIQPFICTQHLIVSLLSFYFPFCLLAKTSI
Sbjct: 421 SSSVGHTAAVPRRCTASPGWGLIQPFICTQHLIVSLLSFYFPFCLLAKTSI 471


>gi|56549673 solute carrier family 41, member 3 isoform 1 [Homo
           sapiens]
          Length = 507

 Score =  914 bits (2361), Expect = 0.0
 Identities = 471/507 (92%), Positives = 471/507 (92%), Gaps = 36/507 (7%)

Query: 1   MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRE 60
           MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRE
Sbjct: 1   MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRE 60

Query: 61  TAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQ----------------------------- 91
           TAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQ                             
Sbjct: 61  TAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQHWPVFVEVKDLLTLVPPLVGLKGNLEMTL 120

Query: 92  -------ANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVAK 144
                  ANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVAK
Sbjct: 121 ASRLSTAANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVAK 180

Query: 145 VELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILALV 204
           VELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILALV
Sbjct: 181 VELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILALV 240

Query: 205 SSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFGG 264
           SSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFGG
Sbjct: 241 SSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFGG 300

Query: 265 LILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWPN 324
           LILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWPN
Sbjct: 301 LILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWPN 360

Query: 325 PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQVT 384
           PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQVT
Sbjct: 361 PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQVT 420

Query: 385 ILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGSSSVGHTAAVPRRCTASPGWGLIQ 444
           ILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGSSSVGHTAAVPRRCTASPGWGLIQ
Sbjct: 421 ILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGSSSVGHTAAVPRRCTASPGWGLIQ 480

Query: 445 PFICTQHLIVSLLSFYFPFCLLAKTSI 471
           PFICTQHLIVSLLSFYFPFCLLAKTSI
Sbjct: 481 PFICTQHLIVSLLSFYFPFCLLAKTSI 507


>gi|56549671 solute carrier family 41, member 3 isoform 2 [Homo
           sapiens]
          Length = 487

 Score =  809 bits (2090), Expect = 0.0
 Identities = 420/457 (91%), Positives = 421/457 (92%), Gaps = 36/457 (7%)

Query: 1   MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRE 60
           MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRE
Sbjct: 1   MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRE 60

Query: 61  TAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQ----------------------------- 91
           TAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQ                             
Sbjct: 61  TAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQHWPVFVEVKDLLTLVPPLVGLKGNLEMTL 120

Query: 92  -------ANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVAK 144
                  ANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVAK
Sbjct: 121 ASRLSTAANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVAK 180

Query: 145 VELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILALV 204
           VELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILALV
Sbjct: 181 VELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILALV 240

Query: 205 SSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFGG 264
           SSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFGG
Sbjct: 241 SSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFGG 300

Query: 265 LILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWPN 324
           LILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWPN
Sbjct: 301 LILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWPN 360

Query: 325 PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQVT 384
           PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQVT
Sbjct: 361 PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQVT 420

Query: 385 ILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGS 421
           ILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLG+
Sbjct: 421 ILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGT 457


>gi|56549677 solute carrier family 41, member 3 isoform 4 [Homo
           sapiens]
          Length = 461

 Score =  645 bits (1663), Expect = 0.0
 Identities = 340/398 (85%), Positives = 351/398 (88%), Gaps = 36/398 (9%)

Query: 60  ETAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQ---------------------------- 91
           E+ ++I  QV VP + +GL +  AG++++  Q                            
Sbjct: 34  ESFFTIMCQVVVPILLSGLCMMTAGLVMNTIQHWPVFVEVKDLLTLVPPLVGLKGNLEMT 93

Query: 92  --------ANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVA 143
                   ANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVA
Sbjct: 94  LASRLSTAANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVA 153

Query: 144 KVELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILAL 203
           KVELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILAL
Sbjct: 154 KVELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAASLGDLITLSILAL 213

Query: 204 VSSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFG 263
           VSSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFG
Sbjct: 214 VSSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGWFPIILAMVISSFG 273

Query: 264 GLILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWP 323
           GLILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWP
Sbjct: 274 GLILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWP 333

Query: 324 NPCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQV 383
           NPCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQV
Sbjct: 334 NPCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQV 393

Query: 384 TILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGS 421
           TILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLG+
Sbjct: 394 TILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGT 431


>gi|51702206 solute carrier family 41 member 1 [Homo sapiens]
          Length = 513

 Score =  380 bits (976), Expect = e-105
 Identities = 210/432 (48%), Positives = 276/432 (63%), Gaps = 43/432 (9%)

Query: 33  VASEDGAL----RAPESQSVTPK--PLETEPSRETAWSIGLQVTVPFMFAGLGLSWAGML 86
           V  ED  L    ++ ES  V+    P    P +ET++SIGLQV  PF+ AG G   AGM+
Sbjct: 60  VREEDALLENGSQSNESDDVSTDRGPAPPSPLKETSFSIGLQVLFPFLLAGFGTVAAGMV 119

Query: 87  LDYFQ------------------------------------ANTGQIDDPQEQHRVISSN 110
           LD  Q                                    AN G +D P+E  R+I+ N
Sbjct: 120 LDIVQHWEVFQKVTEVFILVPALLGLKGNLEMTLASRLSTAANIGHMDTPKELWRMITGN 179

Query: 111 LALIQVQATVVGLLAAVAALLLGVVSREEVDVAKVELLCASSVLTAFLAAFALGVLMVCI 170
           +ALIQVQATVVG LA++AA++ G +      +    LLCASSV TAF+A+  LG++M+ +
Sbjct: 180 MALIQVQATVVGFLASIAAVVFGWIPDGHFSIPHAFLLCASSVATAFIASLVLGMIMIGV 239

Query: 171 VIGARKLGVNPDNIATPIAASLGDLITLSILALVSSFFYRHKDS-RYLTPLVCLSFAALT 229
           +IG+RK+G+NPDN+ATPIAASLGDLITL++L+ +S   Y   +  RY+ PLVC  F AL 
Sbjct: 240 IIGSRKIGINPDNVATPIAASLGDLITLALLSGISWGLYLELNHWRYIYPLVCAFFVALL 299

Query: 230 PVWVLIAKQSPPIVKILKFGWFPIILAMVISSFGGLILSKTVSKQQYKGMAIFTPVICGV 289
           PVWV++A++SP   ++L  GW P+I+AM ISS GGLIL KTVS   + GMA+FTPVI GV
Sbjct: 300 PVWVVLARRSPATREVLYSGWEPVIIAMAISSVGGLILDKTVSDPNFAGMAVFTPVINGV 359

Query: 290 GGNLVAIQTSRISTYLHMWSAPGVLPLQMKKFWPNPCSTFCTSEINSMSARVLLLLVVPG 349
           GGNLVA+Q SRIST+LHM   PG    Q  +  P+PC+TF + ++NS SARVL LLVVPG
Sbjct: 360 GGNLVAVQASRISTFLHMNGMPGENSEQAPRRCPSPCTTFFSPDVNSRSARVLFLLVVPG 419

Query: 350 HLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCI 409
           HL+F Y I  ++G     +  F++ Y+ A L+QV ILLY+A+ MV   W + LDPDN  I
Sbjct: 420 HLVFLYTISCMQGGHTTLTLIFIIFYMTAALLQVLILLYIADWMVHWMWGRGLDPDNFSI 479

Query: 410 PYLTGLGDLLGS 421
           PYLT LGDLLG+
Sbjct: 480 PYLTALGDLLGT 491



 Score = 30.0 bits (66), Expect = 4.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 178 GVNPDNIATPIAASLGDLITLSILAL 203
           G++PDN + P   +LGDL+   +LAL
Sbjct: 471 GLDPDNFSIPYLTALGDLLGTGLLAL 496


>gi|207444687 solute carrier family 41, member 2 [Homo sapiens]
          Length = 573

 Score =  332 bits (850), Expect = 6e-91
 Identities = 190/412 (46%), Positives = 257/412 (62%), Gaps = 43/412 (10%)

Query: 48  VTPKPLETEPSRETAWSIGLQVTVPFMFAGLGLSWAGMLLDYFQ---------------- 91
           VTPK       +E++  + LQ+ VPF+ AG G   AGM+LD  Q                
Sbjct: 147 VTPKL-----PKESSGIMALQILVPFLLAGFGTVSAGMVLDIVQHWEVFRKVTEVFILVP 201

Query: 92  --------------------ANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALL 131
                                N G++D P E+  +I  NLAL QVQATVVG LAAVAA++
Sbjct: 202 ALLGLKGNLEMTLASRLSTAVNIGKMDSPIEKWNLIIGNLALKQVQATVVGFLAAVAAII 261

Query: 132 LGVVSREEVDVAKVELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDNIATPIAAS 191
           LG +   +  +    LLC+SSV TAF+A+   G++MV +++G++K G+NPDN+ATPIAAS
Sbjct: 262 LGWIPEGKYYLDHSILLCSSSVATAFIASLLQGIIMVGVIVGSKKTGINPDNVATPIAAS 321

Query: 192 LGDLITLSILALVSSFFYRHKDS-RYLTPLVCLSFAALTPVWVLIAKQSPPIVKILKFGW 250
            GDLITL+ILA +S   Y   ++  Y++PLV + F ALTP+W++IA + P    +L  GW
Sbjct: 322 FGDLITLAILAWISQGLYSCLETYYYISPLVGVFFLALTPIWIIIAAKHPATRTVLHSGW 381

Query: 251 FPIILAMVISSFGGLILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSA 310
            P+I AMVISS GGLIL  TVS     G+ ++TPVI G+GGNLVAIQ SRISTYLH+ S 
Sbjct: 382 EPVITAMVISSIGGLILDTTVSDPNLVGIVVYTPVINGIGGNLVAIQASRISTYLHLHSI 441

Query: 311 PGVLPLQMKKFWPNPCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQT 370
           PG LP + K  +  P  TF    +N+ SA+VLLLLV+PGHLIF Y I+L++      +  
Sbjct: 442 PGELPDEPKGCY-YPFRTFFGPGVNNKSAQVLLLLVIPGHLIFLYTIHLMKSGHTSLTII 500

Query: 371 FVVLYLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGSS 422
           F+V+YL   ++QV  LL++A+ MV   W +  DPD+  IPYLT LGDLLG++
Sbjct: 501 FIVVYLFGAVLQVFTLLWIADWMVHHFWRKGKDPDSFSIPYLTALGDLLGTA 552


>gi|109255241 natural resistance-associated macrophage protein 1
           [Homo sapiens]
          Length = 550

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 35  SEDGALRAPESQSVTPKPLETEPSRETAWS--IGLQVTVPFMFAGLGLSWA----GMLLD 88
           S  G++ +P S + +P P +  P RET  S  I +  T P  F+ L   WA    G L+ 
Sbjct: 13  SSYGSISSPTSPT-SPGPQQAPP-RETYLSEKIPIPDTKPGTFS-LRKLWAFTGPGFLMS 69

Query: 89  YFQANTGQIDDPQEQHRVISSNLALIQVQATVVGLLAAVAALLLGVVSREEV 140
               + G I+   +   V    L  + + ATV+GLL    A  LGVV+ +++
Sbjct: 70  IAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDL 121


>gi|108796649 hypothetical protein LOC283677 [Homo sapiens]
          Length = 266

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 325 PCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFV 372
           PC T+   + N  S  ++L +V+ GH   F    L+EG S+I S+ ++
Sbjct: 48  PCPTWKVFDSNEESGYLVLTIVISGHFFIFQGQTLLEGFSLIGSKDWL 95


>gi|4759162 SRY-box 14 [Homo sapiens]
          Length = 240

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 20  LGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLET-----EPSRETAWSIGLQVTVPFM 74
           LG   PL   GLPV + DG L APE       P        +P++ ++ +I     VP  
Sbjct: 99  LGDTDPLKAAGLPVGASDGLLSAPEKARAFLPPASAPYSLLDPAQFSSSAIQKMGEVPHT 158

Query: 75  FAGLGLSWAGMLLDYFQANTGQIDDPQE 102
            A   L +A   L Y     G +  P +
Sbjct: 159 LATGALPYAS-TLGYQNGAFGSLSCPSQ 185


>gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens
           neanderthalensis]
          Length = 347

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 28/119 (23%)

Query: 364 SVINSQTFVVL----YLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLL 419
           +++N   +++L    +LL  L   T  L L+    +LTW   L P       L  LG L 
Sbjct: 201 TILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPST-----LLSLGGL- 254

Query: 420 GSSSVGHTAAVPRRCTASPGWGLIQPFICTQHLI-------VSLLSFYFPFCLLAKTSI 471
                      P      P W +I+ F     LI       ++LL+ YF   L+  TSI
Sbjct: 255 -----------PPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYSTSI 302


>gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens]
          Length = 347

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 28/119 (23%)

Query: 364 SVINSQTFVVL----YLLAGLIQVTILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLL 419
           +++N   +++L    +LL  L   T  L L+    +LTW   L P       L  LG L 
Sbjct: 201 TILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPST-----LLSLGGL- 254

Query: 420 GSSSVGHTAAVPRRCTASPGWGLIQPFICTQHLI-------VSLLSFYFPFCLLAKTSI 471
                      P      P W +I+ F     LI       ++LL+ YF   L+  TSI
Sbjct: 255 -----------PPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYSTSI 302


>gi|11141861 claudin 9 [Homo sapiens]
          Length = 217

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 82  WAGMLLDYFQANTGQIDDPQEQHRVISSNLALIQ-VQAT----VVGLLAAVAALLLGVVS 136
           W G+ +     +TGQ+     Q +V  S LAL Q +QA     V+ LL A+  LL+ +  
Sbjct: 47  WEGLWMSCVVQSTGQM-----QCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITG 101

Query: 137 REEVDVAKVELLCASSVLTAFLAAFALGVLMV 168
            +     + E   A  VLTA +     G+L++
Sbjct: 102 AQCTTCVEDEGAKARIVLTAGVILLLAGILVL 133


>gi|4557739 soluble mannose-binding lectin precursor [Homo sapiens]
          Length = 248

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 10  RLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRETAW---SIG 66
           +L   G PG  G P P    G P  S DG      S+    K L+TE +R   W   S+G
Sbjct: 75  KLGPPGNPGPSGSPGPKGQKGDPGKSPDGDSSLAASER---KALQTEMARIKKWLTFSLG 131

Query: 67  LQV 69
            QV
Sbjct: 132 KQV 134


>gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens]
          Length = 858

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 16  KPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETE 56
           K  E  +P P++ G  P+A ++ A R+PE+    P  LE++
Sbjct: 215 KINEDEIPPPVALGKRPLAPQEPANRSPETDPPAPPALESD 255


>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
            sapiens]
          Length = 1977

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 3    GTETRQRRLDSC-GKPGELGLPHPLSTGGLPVASEDG----ALRAPESQSVTPK------ 51
            GTE     L S  G PG+L     +S  G PV  EDG     +R      VTP+      
Sbjct: 1348 GTEPADFALPSSRGGPGKLSPRKGVSQTGTPVCEEDGDAGLGIRQGGKAPVTPRGRGRRG 1407

Query: 52   --PLETEPSRETA 62
              P  T  +RETA
Sbjct: 1408 RPPSRTTGTRETA 1420


>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
            sapiens]
          Length = 1975

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 3    GTETRQRRLDSC-GKPGELGLPHPLSTGGLPVASEDG----ALRAPESQSVTPK------ 51
            GTE     L S  G PG+L     +S  G PV  EDG     +R      VTP+      
Sbjct: 1348 GTEPADFALPSSRGGPGKLSPRKGVSQTGTPVCEEDGDAGLGIRQGGKAPVTPRGRGRRG 1407

Query: 52   --PLETEPSRETA 62
              P  T  +RETA
Sbjct: 1408 RPPSRTTGTRETA 1420


>gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo
            sapiens]
          Length = 1972

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 3    GTETRQRRLDSC-GKPGELGLPHPLSTGGLPVASEDG----ALRAPESQSVTPK------ 51
            GTE     L S  G PG+L     +S  G PV  EDG     +R      VTP+      
Sbjct: 1343 GTEPADFALPSSRGGPGKLSPRKGVSQTGTPVCEEDGDAGLGIRQGGKAPVTPRGRGRRG 1402

Query: 52   --PLETEPSRETA 62
              P  T  +RETA
Sbjct: 1403 RPPSRTTGTRETA 1415


>gi|30581137 phosphatidylinositol glycan anchor biosynthesis, class
           Z [Homo sapiens]
          Length = 579

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 29/190 (15%)

Query: 124 LAAVAALLLGVVSREEVDVAKVELLCASSVLTAFLAAFALGVLMVCIVIGARKLGVNPDN 183
           LA    LL GV+  + +  A   L           A+  +G+L     +GAR L  +P +
Sbjct: 318 LAVNGFLLFGVLHAQALQAAWQRLQ------VGLQASAQMGLLRA---LGARSLLSSPRS 368

Query: 184 IATPIAASLGDLITLSILALVSSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIV 243
                      L+    LAL+S+F   H+++R+L PL       L P+ +L + Q+ P+ 
Sbjct: 369 YLL--------LLYFMPLALLSAF--SHQEARFLIPL-------LVPLVLLCSPQTQPVP 411

Query: 244 KILKFGWFPIILAMVISSFGGLILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRIST 303
                G   +  A+    FG L     V   +Y    +  PV+     +   + T     
Sbjct: 412 ---WKGTVVLFNALGALLFGCLHQGGLVPGLEYLEQVVHAPVLPSTPTHYTLLFTHTYMP 468

Query: 304 YLHMWSAPGV 313
             H+   PG+
Sbjct: 469 PRHLLHLPGL 478


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,245,286
Number of Sequences: 37866
Number of extensions: 751277
Number of successful extensions: 3273
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3238
Number of HSP's gapped (non-prelim): 32
length of query: 471
length of database: 18,247,518
effective HSP length: 106
effective length of query: 365
effective length of database: 14,233,722
effective search space: 5195308530
effective search space used: 5195308530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.