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Search of human proteins with 55956930
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55956930 bromodomain and WD repeat domain containing 1
isoform C [Homo sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55956930 bromodomain and WD repeat domain containing 1 isofor... 239 3e-64
gi|16445438 bromodomain and WD repeat domain containing 1 isofor... 232 4e-62
gi|16445436 bromodomain and WD repeat domain containing 1 isofor... 232 4e-62
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 155 9e-39
gi|34996489 pleckstrin homology domain interacting protein [Homo... 140 2e-34
gi|54792138 helicase with zinc finger domain [Homo sapiens] 28 1.6
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 28 2.1
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens] 27 2.7
gi|169646754 angiopoietin 2 isoform c precursor [Homo sapiens] 26 6.1
gi|169646749 angiopoietin 2 isoform b precursor [Homo sapiens] 26 6.1
gi|4557315 angiopoietin 2 isoform a precursor [Homo sapiens] 26 6.1
gi|20532340 angiopoietin 1 [Homo sapiens] 26 6.1
gi|23308697 signal recognition particle receptor [Homo sapiens] 26 6.1
gi|221219020 NYD-SP11 protein [Homo sapiens] 26 7.9
gi|16604258 neuropeptide FF receptor 2 isoform 2 [Homo sapiens] 26 7.9
gi|221316654 neuropeptide FF receptor 2 isoform 1 [Homo sapiens] 26 7.9
gi|221316652 neuropeptide FF receptor 2 isoform 3 [Homo sapiens] 26 7.9
gi|156104874 envoplakin [Homo sapiens] 26 7.9
gi|134133246 hypothetical protein LOC285753 [Homo sapiens] 26 7.9
gi|28603844 hypothetical protein LOC285753 [Homo sapiens] 26 7.9
gi|56961680 coiled-coil domain containing 147 [Homo sapiens] 26 7.9
>gi|55956930 bromodomain and WD repeat domain containing 1 isoform C
[Homo sapiens]
Length = 120
Score = 239 bits (611), Expect = 3e-64
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHN 60
MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHN
Sbjct: 1 MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHN 60
Query: 61 RSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAKGTLI 120
RSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAKGTLI
Sbjct: 61 RSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAKGTLI 120
>gi|16445438 bromodomain and WD repeat domain containing 1 isoform B
[Homo sapiens]
Length = 2269
Score = 232 bits (592), Expect = 4e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHN 60
MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHN
Sbjct: 1 MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHN 60
Query: 61 RSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAK 116
RSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAK
Sbjct: 61 RSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAK 116
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 49 PKRLDWEGNEHNRSYEELVLSNKHVAPDHLL 79
P +D +GN H Y+ LV ++ A +HL+
Sbjct: 590 PFLVDVDGNPHPTKYQRLVPGRENSADEHLI 620
>gi|16445436 bromodomain and WD repeat domain containing 1 isoform A
[Homo sapiens]
Length = 2320
Score = 232 bits (592), Expect = 4e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHN 60
MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHN
Sbjct: 1 MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHN 60
Query: 61 RSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAK 116
RSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAK
Sbjct: 61 RSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAK 116
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 49 PKRLDWEGNEHNRSYEELVLSNKHVAPDHLL 79
P +D +GN H Y+ LV ++ A +HL+
Sbjct: 590 PFLVDVDGNPHPTKYQRLVPGRENSADEHLI 620
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 155 bits (391), Expect = 9e-39
Identities = 70/103 (67%), Positives = 90/103 (87%)
Query: 14 IESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
IE+ELY+LIAR+L +GPC ++AQVLVQELE++QL+P+RLDWEG EH RS+E+LV +N H+
Sbjct: 8 IEAELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDLVAANAHI 67
Query: 74 APDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAK 116
PD+LL+IC+RIGP+LDKEIP S+ V +LLG GRQSLLR AK
Sbjct: 68 PPDYLLKICERIGPLLDKEIPQSVPGVQTLLGVGRQSLLRDAK 110
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 140 bits (354), Expect = 2e-34
Identities = 66/112 (58%), Positives = 88/112 (78%)
Query: 5 SSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYE 64
S R+ + + SELYFLIAR+L GPC++AAQVL++E+ + +LLP+R DW G EH R+Y+
Sbjct: 2 SCERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTYQ 61
Query: 65 ELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAK 116
LV +H+APDHLLQIC R+GP+L++EIP S+ V +LLGAGRQSLLRT K
Sbjct: 62 NLVKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNK 113
>gi|54792138 helicase with zinc finger domain [Homo sapiens]
Length = 1942
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 9 RPVP--LIESELYFLIARYLSAGPCRRAAQVL----VQELEQYQ------LLPKRLDWEG 56
RP P + SE Y L R+L G CR AQ +EL ++Q L+ + E
Sbjct: 169 RPPPRGITSSEEYTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQNEN 228
Query: 57 NEHNRSYEELVLSN--KHVAPDHLLQIC 82
+ + SY E ++ ++P+ +L C
Sbjct: 229 KQLSGSYMETLIEKWMNSLSPEKVLSEC 256
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 28 AGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEEL 66
A P R A +Q L Q Q PKR+D E EEL
Sbjct: 250 ATPTRTIAATPIQTLPQSQSTPKRIDTPSLEEPSDLEEL 288
>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
Length = 2229
Score = 27.3 bits (59), Expect = 2.7
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 20/101 (19%)
Query: 28 AGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNR-----SYEELVL----------SNKH 72
A P RR A E +Y+ LPKR G+E+ EE L SNK
Sbjct: 1124 AKPRRRVASETHSEGSEYEELPKRRRQRGSENGNEGSLLEREESTLKKGDCRDSWRSNKG 1183
Query: 73 VAPDHLLQICQRIGP-MLDKEIPPSISRVTSLLGAGRQSLL 112
+ DH + GP + +PP +S G GR++ +
Sbjct: 1184 CSEDHSGLDAKSRGPRAFGRALPPRLSN----CGYGRRTFV 1220
>gi|169646754 angiopoietin 2 isoform c precursor [Homo sapiens]
Length = 444
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 43 EQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
++Y L DWEGNE YE LS++ +
Sbjct: 315 QRYVLKIHLKDWEGNEAYSLYEHFYLSSEEL 345
>gi|169646749 angiopoietin 2 isoform b precursor [Homo sapiens]
Length = 495
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 43 EQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
++Y L DWEGNE YE LS++ +
Sbjct: 366 QRYVLKIHLKDWEGNEAYSLYEHFYLSSEEL 396
>gi|4557315 angiopoietin 2 isoform a precursor [Homo sapiens]
Length = 496
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 43 EQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
++Y L DWEGNE YE LS++ +
Sbjct: 367 QRYVLKIHLKDWEGNEAYSLYEHFYLSSEEL 397
>gi|20532340 angiopoietin 1 [Homo sapiens]
Length = 498
Score = 26.2 bits (56), Expect = 6.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 44 QYQLLPKRLDWEGNEHNRSYEELVLSNK 71
QY L + +DWEGN Y+ + N+
Sbjct: 370 QYMLRIELMDWEGNRAYSQYDRFHIGNE 397
>gi|23308697 signal recognition particle receptor [Homo sapiens]
Length = 638
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 71 KHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLL 112
K+VA D +Q+C+ + L+ ++ + S VTS + Q L
Sbjct: 352 KNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 38 LVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVAPDHLLQICQR 84
L QELE+ + + L W+ E N+ +LV K +A + QR
Sbjct: 1714 LAQELEELEWDMEELSWKEEELNQEEGKLVEEKKKLAEEEEALAWQR 1760
>gi|16604258 neuropeptide FF receptor 2 isoform 2 [Homo sapiens]
Length = 420
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 51 RLDWEGNEHNRSYEELVLSNKHVAPDHLLQICQ-RIGPMLDKEIPPSISR 99
R DW E + Y ++ +N ++AP L+ I RIG L + P R
Sbjct: 207 REDWPNQEMRKIYTTVLFANIYLAPLSLIVIMYGRIGISLFRAAVPHTGR 256
>gi|221316654 neuropeptide FF receptor 2 isoform 1 [Homo sapiens]
Length = 522
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 51 RLDWEGNEHNRSYEELVLSNKHVAPDHLLQICQ-RIGPMLDKEIPPSISR 99
R DW E + Y ++ +N ++AP L+ I RIG L + P R
Sbjct: 309 REDWPNQEMRKIYTTVLFANIYLAPLSLIVIMYGRIGISLFRAAVPHTGR 358
>gi|221316652 neuropeptide FF receptor 2 isoform 3 [Homo sapiens]
Length = 423
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 51 RLDWEGNEHNRSYEELVLSNKHVAPDHLLQICQ-RIGPMLDKEIPPSISR 99
R DW E + Y ++ +N ++AP L+ I RIG L + P R
Sbjct: 210 REDWPNQEMRKIYTTVLFANIYLAPLSLIVIMYGRIGISLFRAAVPHTGR 259
>gi|156104874 envoplakin [Homo sapiens]
Length = 2033
Score = 25.8 bits (55), Expect = 7.9
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 12 PLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNK 71
P++E E L A RRAA+ V EL+ +LL L+ E +E+V++ K
Sbjct: 1324 PVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLL---LERRKPEEKVVVQEVVVTQK 1380
Query: 72 HVAPDHLLQICQRIGPMLDKEI 93
L + R+ LD+E+
Sbjct: 1381 ---DPKLREEHSRLSGSLDEEV 1399
>gi|134133246 hypothetical protein LOC285753 [Homo sapiens]
Length = 460
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 37 VLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVA 74
+L +E QY+ K L+ E NE N +++EL+ K ++
Sbjct: 82 ILSREAAQYK---KALENETNERNLAHQELIKQKKDIS 116
>gi|28603844 hypothetical protein LOC285753 [Homo sapiens]
Length = 460
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 37 VLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVA 74
+L +E QY+ K L+ E NE N +++EL+ K ++
Sbjct: 82 ILSREAAQYK---KALENETNERNLAHQELIKQKKDIS 116
>gi|56961680 coiled-coil domain containing 147 [Homo sapiens]
Length = 872
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 40 QELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVA 74
+ELEQ+Q+ +L E +H+ E+L N+ A
Sbjct: 272 KELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKA 306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,724,481
Number of Sequences: 37866
Number of extensions: 186730
Number of successful extensions: 426
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 25
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.