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Search of human proteins with 134288871
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134288871 aminoglycoside phosphotransferase domain
containing 1 isoform 1 [Homo sapiens]
(373 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134288871 aminoglycoside phosphotransferase domain containing... 746 0.0
gi|134288902 aminoglycoside phosphotransferase domain containing... 438 e-123
gi|239752520 PREDICTED: similar to Rap guanine nucleotide exchan... 36 0.064
gi|7657261 Rap guanine nucleotide exchange factor 2 [Homo sapiens] 36 0.064
gi|30039692 NIMA-related kinase 8 [Homo sapiens] 32 1.2
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens] 32 1.2
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens] 32 1.2
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens] 32 1.2
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens] 32 1.2
gi|14249180 wingless-type MMTV integration site family, member 5... 30 4.6
gi|17402919 wingless-type MMTV integration site family, member 5... 30 4.6
gi|4758012 clathrin heavy chain 1 [Homo sapiens] 30 4.6
gi|50539414 cellular modulator of immune recognition isoform 7 [... 30 4.6
gi|50539412 cellular modulator of immune recognition isoform 6 [... 30 4.6
gi|50539410 cellular modulator of immune recognition isoform 8 [... 30 4.6
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 29 7.8
>gi|134288871 aminoglycoside phosphotransferase domain containing 1
isoform 1 [Homo sapiens]
Length = 373
Score = 746 bits (1927), Expect = 0.0
Identities = 373/373 (100%), Positives = 373/373 (100%)
Query: 1 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 60
MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
Sbjct: 1 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 60
Query: 61 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 120
EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
Sbjct: 61 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 120
Query: 121 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 180
YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
Sbjct: 121 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 180
Query: 181 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA 240
VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA
Sbjct: 181 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSA 240
Query: 241 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV 300
SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV
Sbjct: 241 SGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGFESITPLTAV 300
Query: 301 EKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMGQKAVEEIW 360
EKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMGQKAVEEIW
Sbjct: 301 EKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMGQKAVEEIW 360
Query: 361 FETAKSYESGISM 373
FETAKSYESGISM
Sbjct: 361 FETAKSYESGISM 373
>gi|134288902 aminoglycoside phosphotransferase domain containing 1
isoform 2 [Homo sapiens]
Length = 220
Score = 438 bits (1127), Expect = e-123
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 60
MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT
Sbjct: 1 MSSGNYQQSEALSKPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPT 60
Query: 61 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 120
EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS
Sbjct: 61 EYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKS 120
Query: 121 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 180
YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN
Sbjct: 121 YLVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKN 180
Query: 181 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE 220
VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE
Sbjct: 181 VPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRE 220
>gi|239752520 PREDICTED: similar to Rap guanine nucleotide exchange
factor 2, partial [Homo sapiens]
Length = 803
Score = 35.8 bits (81), Expect = 0.064
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 50 VYVSKTKDGPTEYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASL 109
V + +TK PT L +S T +S NPDL++ + I+ F P + K D +
Sbjct: 564 VGLRQTKHIPT--ALPVSGTLSSSNPDLLQSHHRILDFSATPDLPDQVLRVFKADQQSRY 621
Query: 110 VSVDSGSEIKSYLVRLL-----TYLPGR-PIAELPVSPQLLYEIGKLAAKLDKTLQR 160
+ + + K +++ + T P + + E+ V+P+ + + +L +L K R
Sbjct: 622 IMISKDTTAKEVVIQAIREFAVTATPDQYSLCEVSVTPEGVIKQRRLPDQLSKLADR 678
>gi|7657261 Rap guanine nucleotide exchange factor 2 [Homo sapiens]
Length = 1499
Score = 35.8 bits (81), Expect = 0.064
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 50 VYVSKTKDGPTEYVLKISNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASL 109
V + +TK PT L +S T +S NPDL++ + I+ F P + K D +
Sbjct: 564 VGLRQTKHIPT--ALPVSGTLSSSNPDLLQSHHRILDFSATPDLPDQVLRVFKADQQSRY 621
Query: 110 VSVDSGSEIKSYLVRLL-----TYLPGR-PIAELPVSPQLLYEIGKLAAKLDKTLQR 160
+ + + K +++ + T P + + E+ V+P+ + + +L +L K R
Sbjct: 622 IMISKDTTAKEVVIQAIREFAVTATPDQYSLCEVSVTPEGVIKQRRLPDQLSKLADR 678
>gi|30039692 NIMA-related kinase 8 [Homo sapiens]
Length = 692
Score = 31.6 bits (70), Expect = 1.2
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 134 IAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNVPLLEKYLYALG- 192
I ++PV Q+ E + A + L+ +HP + + ENF L++ L+ YA G
Sbjct: 32 IKQIPVE-QMTKEERQAAQNECQVLKLLNHPNVIEYY-ENF---LEDKALMIAMEYAPGG 86
Query: 193 ------QNRNREIVEH--VIHLFKEEVMTKLSHFRECINHGDLNDHNILIESSKSASGNA 244
Q R ++E ++H F + ++ I H DL NIL++ +
Sbjct: 87 TLAEFIQKRCNSLLEEETILHFFVQILLALHHVHTHLILHRDLKTQNILLDKHRMVVKIG 146
Query: 245 EYQVSGILDFGDMSY 259
++ +S IL +Y
Sbjct: 147 DFGISKILSSKSKAY 161
>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
Length = 3095
Score = 31.6 bits (70), Expect = 1.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 41 PSYDDQNFH-VYVSKTKDGPTEYVLKISNTKASKN-PDLIEVQNHIIMFLK 89
P Y D+N VY+ T D E +L + KA KN PDL N+++ +K
Sbjct: 938 PEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIK 988
>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
Length = 3069
Score = 31.6 bits (70), Expect = 1.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 41 PSYDDQNFH-VYVSKTKDGPTEYVLKISNTKASKN-PDLIEVQNHIIMFLK 89
P Y D+N VY+ T D E +L + KA KN PDL N+++ +K
Sbjct: 938 PEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIK 988
>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
Length = 3174
Score = 31.6 bits (70), Expect = 1.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 41 PSYDDQNFH-VYVSKTKDGPTEYVLKISNTKASKN-PDLIEVQNHIIMFLK 89
P Y D+N VY+ T D E +L + KA KN PDL N+++ +K
Sbjct: 938 PEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIK 988
>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
Length = 3135
Score = 31.6 bits (70), Expect = 1.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 41 PSYDDQNFH-VYVSKTKDGPTEYVLKISNTKASKN-PDLIEVQNHIIMFLK 89
P Y D+N VY+ T D E +L + KA KN PDL N+++ +K
Sbjct: 938 PEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIK 988
>gi|14249180 wingless-type MMTV integration site family, member 5B
precursor [Homo sapiens]
Length = 359
Score = 29.6 bits (65), Expect = 4.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 297 LTAVEKGALFLLVCSRFCQSLVMAAYS----CQLYPENKDYLMVTAKTGWKHLQQMF 349
L V++ +F++ C L + CQLY E+ Y+ AKTG K Q F
Sbjct: 31 LNPVQRPEMFIIGAQPVCSQLPGLSPGQRKLCQLYQEHMAYIGEGAKTGIKECQHQF 87
>gi|17402919 wingless-type MMTV integration site family, member 5B
precursor [Homo sapiens]
Length = 359
Score = 29.6 bits (65), Expect = 4.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 297 LTAVEKGALFLLVCSRFCQSLVMAAYS----CQLYPENKDYLMVTAKTGWKHLQQMF 349
L V++ +F++ C L + CQLY E+ Y+ AKTG K Q F
Sbjct: 31 LNPVQRPEMFIIGAQPVCSQLPGLSPGQRKLCQLYQEHMAYIGEGAKTGIKECQHQF 87
>gi|4758012 clathrin heavy chain 1 [Homo sapiens]
Length = 1675
Score = 29.6 bits (65), Expect = 4.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 164 PKLSSLHRENFIWNLKNVPLLEKYLYALGQNRNREIVEHVIHLFKEE 210
P+L N+ +K +PL++ YL ++ + N+ + E + +LF E
Sbjct: 1428 PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 1474
>gi|50539414 cellular modulator of immune recognition isoform 7
[Homo sapiens]
Length = 291
Score = 29.6 bits (65), Expect = 4.6
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 32 LKVSKVRPLPSYDDQNFHVYVSKTKDGPTE---------YVLKISNTKASKNPDLIEVQN 82
+ + ++ +PS D + VY SKTK+ E ++ SN + +P
Sbjct: 3 MPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPA 62
Query: 83 HIIMFLKAAGFPTAS----VCHTKGDNTASLVS 111
+ F + + P++ +CH +GD+ + L++
Sbjct: 63 PVSSFSRTSITPSSQDICRICHCEGDDESPLIT 95
>gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
Length = 291
Score = 29.6 bits (65), Expect = 4.6
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 32 LKVSKVRPLPSYDDQNFHVYVSKTKDGPTE---------YVLKISNTKASKNPDLIEVQN 82
+ + ++ +PS D + VY SKTK+ E ++ SN + +P
Sbjct: 3 MPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPA 62
Query: 83 HIIMFLKAAGFPTAS----VCHTKGDNTASLVS 111
+ F + + P++ +CH +GD+ + L++
Sbjct: 63 PVSSFSRTSITPSSQDICRICHCEGDDESPLIT 95
>gi|50539410 cellular modulator of immune recognition isoform 8
[Homo sapiens]
Length = 291
Score = 29.6 bits (65), Expect = 4.6
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 32 LKVSKVRPLPSYDDQNFHVYVSKTKDGPTE---------YVLKISNTKASKNPDLIEVQN 82
+ + ++ +PS D + VY SKTK+ E ++ SN + +P
Sbjct: 3 MPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPA 62
Query: 83 HIIMFLKAAGFPTAS----VCHTKGDNTASLVS 111
+ F + + P++ +CH +GD+ + L++
Sbjct: 63 PVSSFSRTSITPSSQDICRICHCEGDDESPLIT 95
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 28.9 bits (63), Expect = 7.8
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 21/107 (19%)
Query: 156 KTLQRFHHPKLSSLHRENFIWNLKNVPLLEKYLYALGQNRNREIVEHV--IHLFKEEVMT 213
+ + F+H + L E NL+ V L+KY +++ H+ + + +++
Sbjct: 752 RLFRHFYHKQHLCLVFEPLSMNLREV--LKKY--------GKDVGLHIKAVRSYSQQLFL 801
Query: 214 KLSHFREC-INHGDLNDHNILIESSKSASGNAEYQVSGILDFGDMSY 259
L + C I H D+ NIL+ SK+ + + DFG S+
Sbjct: 802 ALKLLKRCNILHADIKPDNILVNESKT--------ILKLCDFGSASH 840
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,983,205
Number of Sequences: 37866
Number of extensions: 541663
Number of successful extensions: 1365
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1360
Number of HSP's gapped (non-prelim): 16
length of query: 373
length of database: 18,247,518
effective HSP length: 104
effective length of query: 269
effective length of database: 14,309,454
effective search space: 3849243126
effective search space used: 3849243126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.