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Search of human proteins with 55956779
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo
sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo s... 281 2e-76
gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo ... 275 7e-75
gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo s... 275 7e-75
gi|4504505 hydroxysteroid (17-beta) dehydrogenase 4 [Homo sapiens] 89 2e-18
gi|30425406 hypothetical protein LOC140856 [Homo sapiens] 80 7e-16
gi|55956781 sterol carrier protein 2 isoform 3 precursor [Homo s... 74 3e-14
gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens] 67 5e-12
gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens] 54 5e-08
gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens] 33 0.058
gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo sa... 29 1.4
gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo sa... 28 3.2
gi|46575934 KIAA1680 protein isoform 2 [Homo sapiens] 27 4.2
gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens] 27 4.2
gi|192455698 glutathione peroxidase 8 [Homo sapiens] 27 5.5
gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens] 26 9.3
gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens] 26 9.3
gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens] 26 9.3
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 26 9.3
gi|145199237 transcription elongation factor B polypeptide 3 bin... 26 9.3
>gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo
sapiens]
Length = 140
Score = 281 bits (718), Expect = 2e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MGFPEAARTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGP 60
MGFPEAARTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGP
Sbjct: 1 MGFPEAARTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGP 60
Query: 61 GGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITG 120
GGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITG
Sbjct: 61 GGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITG 120
Query: 121 NMGLAMKLQNLQLQPGNAKL 140
NMGLAMKLQNLQLQPGNAKL
Sbjct: 121 NMGLAMKLQNLQLQPGNAKL 140
>gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo
sapiens]
Length = 547
Score = 275 bits (704), Expect = 7e-75
Identities = 140/143 (97%), Positives = 140/143 (97%), Gaps = 3/143 (2%)
Query: 1 MGFPEAA---RTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 57
MGFPEAA RTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK
Sbjct: 405 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 464
Query: 58 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 117
DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK
Sbjct: 465 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 524
Query: 118 ITGNMGLAMKLQNLQLQPGNAKL 140
ITGNMGLAMKLQNLQLQPGNAKL
Sbjct: 525 ITGNMGLAMKLQNLQLQPGNAKL 547
>gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo
sapiens]
Length = 143
Score = 275 bits (704), Expect = 7e-75
Identities = 140/143 (97%), Positives = 140/143 (97%), Gaps = 3/143 (2%)
Query: 1 MGFPEAA---RTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 57
MGFPEAA RTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK
Sbjct: 1 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 60
Query: 58 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 117
DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK
Sbjct: 61 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 120
Query: 118 ITGNMGLAMKLQNLQLQPGNAKL 140
ITGNMGLAMKLQNLQLQPGNAKL
Sbjct: 121 ITGNMGLAMKLQNLQLQPGNAKL 143
>gi|4504505 hydroxysteroid (17-beta) dehydrogenase 4 [Homo sapiens]
Length = 736
Score = 88.6 bits (218), Expect = 2e-18
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 17 TSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKG 76
T S ++ VF+EI ++L++ G + VKK+ +F + + G G A W +D+K+G G
Sbjct: 615 TPSEGGKLQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKG-GNIGAKWTIDLKSGSG 673
Query: 77 SVLPNSDK-KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQ 129
V K AD TI ++D DF+ ++ GK++PQ AFF G+LK GN+ L+ KLQ
Sbjct: 674 KVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQKLQ 727
>gi|30425406 hypothetical protein LOC140856 [Homo sapiens]
Length = 156
Score = 79.7 bits (195), Expect = 7e-16
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 4 PEAARTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGK 63
PE A H +E F++ VF++I + E G Q VKK+ +F + G
Sbjct: 29 PEPAMPHPLEL-------SEFESFPVFQDIRLHIREVGAQLVKKVNAVFQLDITKN-GKT 80
Query: 64 EATWVVDVKNGKGSVLPNSDK-KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNM 122
W +D+KNG G + P + AD T+ +S F+ L+ GKMNPQ AF GK K++G +
Sbjct: 81 ILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKV 140
Query: 123 GLAMKLQNL 131
L+ KL+ +
Sbjct: 141 LLSWKLERV 149
>gi|55956781 sterol carrier protein 2 isoform 3 precursor [Homo
sapiens]
Length = 59
Score = 74.3 bits (181), Expect = 3e-14
Identities = 39/42 (92%), Positives = 39/42 (92%), Gaps = 3/42 (7%)
Query: 1 MGFPEAA---RTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 39
MGFPEAA RTHQIEAVPTSSASDGFKANLVFKEIEKKLEE
Sbjct: 1 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 42
>gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens]
Length = 418
Score = 67.0 bits (162), Expect = 5e-12
Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 13/131 (9%)
Query: 11 QIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVD 70
Q++ P S A + F+ ++ L ++ VK I+ F++ GG TW +D
Sbjct: 300 QLQPKPRSGAVEE-----TFRIVKDSLSDD---VVKATQAIYLFELSGEDGG---TWFLD 348
Query: 71 VKNGKGSV-LPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQ 129
+K+ G+V +AD ++M DF+ + +GK+ P AF GKLKI GNM LA+KL+
Sbjct: 349 LKSKGGNVGYGEPSDQADVVMSMTTDDFVKMFSGKLKPTMAFMSGKLKIKGNMALAIKLE 408
Query: 130 NLQLQPGNAKL 140
L Q NA+L
Sbjct: 409 KLMNQM-NARL 418
>gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
Length = 398
Score = 53.5 bits (127), Expect = 5e-08
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 42 EQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPN-SDKKADCTITMADSDFLAL 100
E V ++G + F V P G ++ + +D+ G+G V D D + MA++D AL
Sbjct: 304 EALVSQVGACYQFNVVL-PSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLRAL 362
Query: 101 MTGKMNPQSAFFQGKLKITGNMGLAMKLQ 129
+ ++ P A+ G+LK+ G++ +AMKL+
Sbjct: 363 LCRELRPLGAYMSGRLKVKGDLAMAMKLE 391
>gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]
Length = 775
Score = 33.5 bits (75), Expect = 0.058
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 12 IEAVPTSSASDGFKANLVFKEIE-KKLEEEGEQFVKKIGGIFAFK-VKDGPGGKE 64
+E +P+S A+DG KA ++ + E K+L+EE E++ + + K KDG GKE
Sbjct: 462 LEIMPSSEAADGEKATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGNLGKE 516
>gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo
sapiens]
Length = 596
Score = 28.9 bits (63), Expect = 1.4
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 31 KEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTI 90
+E+E ++E+ + K+ K GP +E W V K+G+ S+L K++ +
Sbjct: 347 QELESLMKEQ-DLLETKLRSYEREKTSFGPALEETQWEVCQKSGEISLLKQQLKESQTEV 405
Query: 91 TMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQ 132
S+ L L Q +GKL+ GL ++ Q+L+
Sbjct: 406 NAKASEILGL-----KAQLKDTRGKLE-----GLELRTQDLE 437
>gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo
sapiens]
Length = 669
Score = 27.7 bits (60), Expect = 3.2
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 36 KLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADS 95
+L +E EQ ++ + + + GP +E W V K+G+ S+L K++ + S
Sbjct: 410 QLLQEREQLERRCATLEREQRELGPRLEETKWEVCQKSGEISLLKQQLKESQAELVQKGS 469
Query: 96 DFLAL 100
+ +AL
Sbjct: 470 ELVAL 474
>gi|46575934 KIAA1680 protein isoform 2 [Homo sapiens]
Length = 677
Score = 27.3 bits (59), Expect = 4.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 69 VDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAF 111
VDV GS L + AD T S+FLAL ++ AF
Sbjct: 232 VDVTERAGSSLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAF 274
>gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens]
Length = 900
Score = 27.3 bits (59), Expect = 4.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 69 VDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAF 111
VDV GS L + AD T S+FLAL ++ AF
Sbjct: 232 VDVTERAGSSLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAF 274
>gi|192455698 glutathione peroxidase 8 [Homo sapiens]
Length = 209
Score = 26.9 bits (58), Expect = 5.5
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 43 QFVK-KIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLAL 100
+F+K KI +AF+VKD G V ++ KG V + +DC +T D ++L L
Sbjct: 38 KFLKPKINSFYAFEVKDAKGR-----TVSLEKYKGKVSLVVNVASDCQLT--DRNYLGL 89
>gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens]
Length = 757
Score = 26.2 bits (56), Expect = 9.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 13 EAVPTSSASDGFKANLVFKEIEKKLE---EEGEQFVKKIGGIFAFKVKDGPGGKE 64
EA P S S +N + +E + + E + ++ G IF ++KD PG E
Sbjct: 471 EASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLKEESGTIFGSQIKDAPGEDE 525
>gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens]
Length = 1235
Score = 26.2 bits (56), Expect = 9.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 13 EAVPTSSASDGFKANLVFKEIEKKLE---EEGEQFVKKIGGIFAFKVKDGPGGKE 64
EA P S S +N + +E + + E + ++ G IF ++KD PG E
Sbjct: 577 EASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLKEESGTIFGSQIKDAPGEDE 631
>gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens]
Length = 951
Score = 26.2 bits (56), Expect = 9.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 13 EAVPTSSASDGFKANLVFKEIEKKLE---EEGEQFVKKIGGIFAFKVKDGPGGKE 64
EA P S S +N + +E + + E + ++ G IF ++KD PG E
Sbjct: 650 EASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLKEESGTIFGSQIKDAPGEDE 704
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 26.2 bits (56), Expect = 9.3
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 31 KEIEKKLEEEGEQFVKKIGGIFAF---------KVKDGPGGKEATWVVDVKNGKGSVLPN 81
KE +KKL E+ Q+V+K I F K + G GG+ + K G+ N
Sbjct: 868 KEEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSK-----KGGEFDEFVN 922
Query: 82 SDKKADCTIT 91
D D I+
Sbjct: 923 DDTDDDLPIS 932
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 26.2 bits (56), Expect = 9.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 39 EEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKK 85
+EG+ KK G A KDG GK+ T D G+ P +DKK
Sbjct: 372 KEGKPKKKKTGAPPAPSCKDGAQGKDKT--KDKGRGRPVEKPRADKK 416
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,477,845
Number of Sequences: 37866
Number of extensions: 225654
Number of successful extensions: 415
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 19
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.