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Search of human proteins with 55770842
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55770842 C-reactive protein, pentraxin-related [Homo
sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens] 459 e-130
gi|4502133 serum amyloid P component precursor [Homo sapiens] 233 8e-62
gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens] 144 6e-35
gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens] 144 6e-35
gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo sap... 144 6e-35
gi|55770878 neuronal pentraxin I precursor [Homo sapiens] 83 2e-16
gi|61966763 hypothetical protein LOC390667 [Homo sapiens] 79 2e-15
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 78 5e-15
gi|28195384 neuronal pentraxin II [Homo sapiens] 77 2e-14
gi|148886654 polydom [Homo sapiens] 74 8e-14
gi|167900484 pentraxin 3 [Homo sapiens] 69 3e-12
gi|240120161 G protein-coupled receptor 144 [Homo sapiens] 63 2e-10
gi|74048357 G protein-coupled receptor 126 alpha 1 precursor [Ho... 44 1e-04
gi|50355941 G protein-coupled receptor 126 beta 1 precursor [Hom... 44 1e-04
gi|74048422 G protein-coupled receptor 126 alpha 2 precursor [Ho... 44 1e-04
gi|74048403 G protein-coupled receptor 126 beta 2 precursor [Hom... 44 1e-04
gi|40807465 zinc finger protein 341 [Homo sapiens] 28 8.3
>gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens]
Length = 224
Score = 459 bits (1181), Expect = e-130
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTE 60
MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTE
Sbjct: 1 MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTE 60
Query: 61 LSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAPVHICTSWES 120
LSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAPVHICTSWES
Sbjct: 61 LSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAPVHICTSWES 120
Query: 121 ASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMW 180
ASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMW
Sbjct: 121 ASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMW 180
Query: 181 DFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQLWP 224
DFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQLWP
Sbjct: 181 DFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQLWP 224
>gi|4502133 serum amyloid P component precursor [Homo sapiens]
Length = 223
Score = 233 bits (595), Expect = 8e-62
Identities = 114/220 (51%), Positives = 154/220 (70%), Gaps = 2/220 (0%)
Query: 4 LLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSS 63
LL VLTSL AF TD+S K FVFP+ES T +V+L PL KPL+ FT+C Y++LS
Sbjct: 5 LLWISVLTSLLEAFAHTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLS- 63
Query: 64 TRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAPVHICTSWESASG 123
R YS+FSY T+ +DNE+L++ + YS +G ++ +V E APVHIC SWES+SG
Sbjct: 64 -RAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSG 122
Query: 124 IVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFV 183
I EFW++G P V+K L++GY V A+ I+LGQEQDS+GG F+ SQS VG+IG++ MWD V
Sbjct: 123 IAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSV 182
Query: 184 LSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQLW 223
L P+ I + Y G P N+L+W+AL YE++G V KP +W
Sbjct: 183 LPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVW 222
>gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 144 bits (363), Expect = 6e-35
Identities = 83/182 (45%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 46 KPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFE-- 103
KPLK F +CL +T+ T YS+F Y+T+ QDNE+L+ +K Y +G + + F
Sbjct: 54 KPLKNFKLCLKTFTDF--TCPYSLF-YSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGP 110
Query: 104 --VPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFG 161
P A H+ SWESASGI W +GK RK + KGY+VG EA IILGQEQDSFG
Sbjct: 111 TPCPRSPYASTHVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFG 170
Query: 162 GNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQ 221
G+F+ +QS VG I +V +WD VL P E+ +S ++LN L YE G V TKP+
Sbjct: 171 GHFDENQSFVGVIWDVFLWDHVLPPKEM----CDSCYSGSLLNRHTLTYEDNGYVVTKPK 226
Query: 222 LW 223
+W
Sbjct: 227 VW 228
>gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 144 bits (363), Expect = 6e-35
Identities = 83/182 (45%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 46 KPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFE-- 103
KPLK F +CL +T+ T YS+F Y+T+ QDNE+L+ +K Y +G + + F
Sbjct: 54 KPLKNFKLCLKTFTDF--TCPYSLF-YSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGP 110
Query: 104 --VPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFG 161
P A H+ SWESASGI W +GK RK + KGY+VG EA IILGQEQDSFG
Sbjct: 111 TPCPRSPYASTHVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFG 170
Query: 162 GNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQ 221
G+F+ +QS VG I +V +WD VL P E+ +S ++LN L YE G V TKP+
Sbjct: 171 GHFDENQSFVGVIWDVFLWDHVLPPKEM----CDSCYSGSLLNRHTLTYEDNGYVVTKPK 226
Query: 222 LW 223
+W
Sbjct: 227 VW 228
>gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo
sapiens]
Length = 229
Score = 144 bits (363), Expect = 6e-35
Identities = 83/182 (45%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 46 KPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFE-- 103
KPLK F +CL +T+ T YS+F Y+T+ QDNE+L+ +K Y +G + + F
Sbjct: 54 KPLKNFKLCLKTFTDF--TCPYSLF-YSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGP 110
Query: 104 --VPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFG 161
P A H+ SWESASGI W +GK RK + KGY+VG EA IILGQEQDSFG
Sbjct: 111 TPCPRSPYASTHVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFG 170
Query: 162 GNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQ 221
G+F+ +QS VG I +V +WD VL P E+ +S ++LN L YE G V TKP+
Sbjct: 171 GHFDENQSFVGVIWDVFLWDHVLPPKEM----CDSCYSGSLLNRHTLTYEDNGYVVTKPK 226
Query: 222 LW 223
+W
Sbjct: 227 VW 228
>gi|55770878 neuronal pentraxin I precursor [Homo sapiens]
Length = 432
Score = 82.8 bits (203), Expect = 2e-16
Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 33/234 (14%)
Query: 2 EKLLCFLVLTSLSHAFGQTDMSRK--------AFVFPKESDTSYVSLKAPLTKPLKAFTV 53
E++ LTSL + + +K FP ++ Y +K L + + AFTV
Sbjct: 197 ERVKIETALTSLHQRISELEKGQKDNRPGDKFQLTFPLRTNYMYAKVKKSLPE-MYAFTV 255
Query: 54 CLHFYTELSSTRGYSI-FSYATKRQDNE-ILIFWSKDIGYSFTVGGSEILFEVPEVTVAP 111
C+ + + S+T G FSYA Q NE +LI W + EIL +V P
Sbjct: 256 CM--WLKSSATPGVGTPFSYAVPGQANELVLIEWGNN--------PMEILIN-DKVAKLP 304
Query: 112 V--------HICTSWESASGIVEFWVDG-KPRVRKSLKKGYTVGAEASIILGQEQDSFGG 162
HIC +W + G+ E + DG + ++L + + + ++LGQEQD+ GG
Sbjct: 305 FVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGG 364
Query: 163 NFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGG--PFSPNVLNWRALKYEVQG 214
F+ +Q+ VG++ + N+WD L+P E+ + S NV+ W E+ G
Sbjct: 365 GFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYG 418
>gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
Length = 473
Score = 79.3 bits (194), Expect = 2e-15
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 8/177 (4%)
Query: 28 VFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSK 87
VFP S + V L L+A + C + +S R ++ SYAT+ DN++++
Sbjct: 269 VFPNASTRNVVFLSPGFVTALRALSFCS--WVRTASGRLGTLLSYATEDNDNKLVLHGRD 326
Query: 88 DI--GYSFTVGGSEILFEVPEVTVAPV---HICTSWESASGIVEFWVDGKPRVRKS-LKK 141
+ G V G E+P + HIC W S G VD + S ++
Sbjct: 327 SLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFRE 386
Query: 142 GYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPF 198
GY + S++LGQEQDS GG F+ S++ VG + + +WD L P E+ + +G F
Sbjct: 387 GYEIPPGGSLVLGQEQDSVGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEF 443
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 78.2 bits (191), Expect = 5e-15
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 3/187 (1%)
Query: 30 PKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDI 89
P ++ Y ++ L + L AFT C+ + S T + FSY+ Q NEI++ +
Sbjct: 299 PIRNNYMYARVRKALPE-LYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHE 357
Query: 90 GYSFTVGGSEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVR-KSLKKGYTVGAE 148
+ + HIC +W + G+ + DG+ + ++L + +
Sbjct: 358 PMELLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPH 417
Query: 149 ASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTI-YLGGPFSPNVLNWRA 207
+ILGQEQD+ GG F+ +Q+ VGDI N+WD L+P ++ I P NVL W
Sbjct: 418 GILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWED 477
Query: 208 LKYEVQG 214
E G
Sbjct: 478 KLVEAFG 484
>gi|28195384 neuronal pentraxin II [Homo sapiens]
Length = 431
Score = 76.6 bits (187), Expect = 2e-14
Identities = 66/202 (32%), Positives = 95/202 (47%), Gaps = 26/202 (12%)
Query: 35 TSYVSLKAPLTKP-LKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEI-LIFWSKDIGYS 92
T+Y+ K T P L AFT+CL + S G + FSYA Q NEI LI W +
Sbjct: 233 TNYLYGKIKKTLPELYAFTICLWLRSSASPGIG-TPFSYAVPGQANEIVLIEWGNN---- 287
Query: 93 FTVGGSEILFEVPEVTVAPV--------HICTSWESASGIVEFWVDG-KPRVRKSLKKGY 143
E+L +V P+ HIC +W + G+ E + DG K ++L +
Sbjct: 288 ----PIELLIN-DKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGTGENLAPWH 342
Query: 144 TVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSP-NV 202
+ +ILGQEQD+ GG F+ +Q+ VG++ N+WD VL EI I P N+
Sbjct: 343 PIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIANCSTNMPGNI 402
Query: 203 LNWRALKYEVQGEVFTKPQLWP 224
+ W + +VF WP
Sbjct: 403 IPW----VDNNVDVFGGASKWP 420
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 74.3 bits (181), Expect = 8e-14
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 57 FYTELSSTRGYSI-FSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAPVH-I 114
F+ + S Y SYA + L+ + G+ V G E + P V H I
Sbjct: 1455 FWMKSSDDMNYGTPISYAVDNGSDNTLLLTDYN-GWVLYVNGREKITNCPSVNDGRWHHI 1513
Query: 115 CTSWESASGIVEFWVDGK-PRVRKSLKKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGD 173
+W SA+GI + ++DGK L G + +++LGQEQD G F ++S VG
Sbjct: 1514 AITWTSANGIWKVYIDGKLSDGGAGLSVGLPIPGGGALVLGQEQDKKGEGFSPAESFVGS 1573
Query: 174 IGNVNMWDFVLSPDEINTIYLGGP---FSPNVLNWRALKYEVQGEV 216
I +N+WD+VLSP ++ ++ P NVL W + G+V
Sbjct: 1574 ISQLNLWDYVLSPQQVKSLATSCPEELSKGNVLAWPDFLSGIVGKV 1619
>gi|167900484 pentraxin 3 [Homo sapiens]
Length = 381
Score = 68.9 bits (167), Expect = 3e-12
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 17/200 (8%)
Query: 26 AFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSI-FSYATKRQDNEILIF 84
A +FP S + S+ L++F+ C+ + + + +I FSY TKR EI ++
Sbjct: 182 AILFPMRSKKIFGSVHPVRPMRLESFSACI--WVKATDVLNKTILFSYGTKRNPYEIQLY 239
Query: 85 WSKDIGYSFTVGGSEILFEVPEVTVAP---VHICTSWESASGIVEFWVDGK-PRVRKSLK 140
S F VGG E V E V+ H+C +W S G+ WV+G+ +
Sbjct: 240 LSYQ-SIVFVVGGEENKL-VAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMA 297
Query: 141 KGYTVGAEASIILGQEQDS--FGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPF 198
G+ V + +GQE++ GG F+ + + G + N+WD VLS +EI GG
Sbjct: 298 TGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRE--TGGAE 355
Query: 199 S----PNVLNWRALKYEVQG 214
S N++ W + + G
Sbjct: 356 SCHIRGNIVGWGVTEIQPHG 375
>gi|240120161 G protein-coupled receptor 144 [Homo sapiens]
Length = 963
Score = 62.8 bits (151), Expect = 2e-10
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 28 VFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSK 87
VF + + L++PL + L A T C H + +S ++FS A N + +
Sbjct: 121 VFDERTADRAARLRSPLPE-LAALTACTHVQWDCASPDPAALFSVAAPALPNALQLRAFA 179
Query: 88 DIG----YSFTVGGSEILFEVP-EVTVAPVHICTSWESASGIVEFWVDGKPRV-RKSLKK 141
+ G + V G F H+C +WE G + DG+ R + L
Sbjct: 180 EPGGVVRAALVVRGQHAPFLAAFRADGRWHHVCATWEQRGGRWALFSDGRRRAGARGLGA 239
Query: 142 GYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPN 201
G+ V + ++LGQ+QDS GG F +L G++ + ++W LSP +++ P S
Sbjct: 240 GHPVPSGGILVLGQDQDSLGGGFSVRHALSGNLTDFHLWARALSPAQLHRARACAPPSEG 299
Query: 202 VL 203
+L
Sbjct: 300 LL 301
>gi|74048357 G protein-coupled receptor 126 alpha 1 precursor [Homo
sapiens]
Length = 1221
Score = 43.5 bits (101), Expect = 1e-04
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 10/184 (5%)
Query: 28 VFPKESDTSYVSLKAPLTKP-LKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWS 86
+ P+ SD VS+ ++ P L AFT+C ++ FSY+ ++L F
Sbjct: 159 ILPQTSDAYQVSVAKSISIPELSAFTLCFEATKVGHEDSDWTAFSYSNA-SFTQLLSFGK 217
Query: 87 KDIGYSFTVGGSEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGY-TV 145
GY ++ S+ L I ES + W + + + K+ Y TV
Sbjct: 218 AKSGYFLSISDSKCLLNNALPVKEKEDIFA--ESFEQLCLVWNNSLGSIGVNFKRNYETV 275
Query: 146 GAEASI---ILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNV 202
+++I I G + G N SL GDI N +W+F ++ ++ L NV
Sbjct: 276 PCDSTISKVIPGNGKLLLGSNQNEIVSLKGDIYNFRLWNFTMNAKILSN--LSCNVKGNV 333
Query: 203 LNWR 206
++W+
Sbjct: 334 VDWQ 337
>gi|50355941 G protein-coupled receptor 126 beta 1 precursor [Homo
sapiens]
Length = 1250
Score = 43.5 bits (101), Expect = 1e-04
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 10/184 (5%)
Query: 28 VFPKESDTSYVSLKAPLTKP-LKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWS 86
+ P+ SD VS+ ++ P L AFT+C ++ FSY+ ++L F
Sbjct: 159 ILPQTSDAYQVSVAKSISIPELSAFTLCFEATKVGHEDSDWTAFSYSNA-SFTQLLSFGK 217
Query: 87 KDIGYSFTVGGSEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGY-TV 145
GY ++ S+ L I ES + W + + + K+ Y TV
Sbjct: 218 AKSGYFLSISDSKCLLNNALPVKEKEDIFA--ESFEQLCLVWNNSLGSIGVNFKRNYETV 275
Query: 146 GAEASI---ILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNV 202
+++I I G + G N SL GDI N +W+F ++ ++ L NV
Sbjct: 276 PCDSTISKVIPGNGKLLLGSNQNEIVSLKGDIYNFRLWNFTMNAKILSN--LSCNVKGNV 333
Query: 203 LNWR 206
++W+
Sbjct: 334 VDWQ 337
>gi|74048422 G protein-coupled receptor 126 alpha 2 precursor [Homo
sapiens]
Length = 1193
Score = 43.5 bits (101), Expect = 1e-04
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 10/184 (5%)
Query: 28 VFPKESDTSYVSLKAPLTKP-LKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWS 86
+ P+ SD VS+ ++ P L AFT+C ++ FSY+ ++L F
Sbjct: 159 ILPQTSDAYQVSVAKSISIPELSAFTLCFEATKVGHEDSDWTAFSYSNA-SFTQLLSFGK 217
Query: 87 KDIGYSFTVGGSEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGY-TV 145
GY ++ S+ L I ES + W + + + K+ Y TV
Sbjct: 218 AKSGYFLSISDSKCLLNNALPVKEKEDIFA--ESFEQLCLVWNNSLGSIGVNFKRNYETV 275
Query: 146 GAEASI---ILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNV 202
+++I I G + G N SL GDI N +W+F ++ ++ L NV
Sbjct: 276 PCDSTISKVIPGNGKLLLGSNQNEIVSLKGDIYNFRLWNFTMNAKILSN--LSCNVKGNV 333
Query: 203 LNWR 206
++W+
Sbjct: 334 VDWQ 337
>gi|74048403 G protein-coupled receptor 126 beta 2 precursor [Homo
sapiens]
Length = 1222
Score = 43.5 bits (101), Expect = 1e-04
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 10/184 (5%)
Query: 28 VFPKESDTSYVSLKAPLTKP-LKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWS 86
+ P+ SD VS+ ++ P L AFT+C ++ FSY+ ++L F
Sbjct: 159 ILPQTSDAYQVSVAKSISIPELSAFTLCFEATKVGHEDSDWTAFSYSNA-SFTQLLSFGK 217
Query: 87 KDIGYSFTVGGSEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGY-TV 145
GY ++ S+ L I ES + W + + + K+ Y TV
Sbjct: 218 AKSGYFLSISDSKCLLNNALPVKEKEDIFA--ESFEQLCLVWNNSLGSIGVNFKRNYETV 275
Query: 146 GAEASI---ILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNV 202
+++I I G + G N SL GDI N +W+F ++ ++ L NV
Sbjct: 276 PCDSTISKVIPGNGKLLLGSNQNEIVSLKGDIYNFRLWNFTMNAKILSN--LSCNVKGNV 333
Query: 203 LNWR 206
++W+
Sbjct: 334 VDWQ 337
>gi|40807465 zinc finger protein 341 [Homo sapiens]
Length = 847
Score = 27.7 bits (60), Expect = 8.3
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 96 GGSEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRK-----SLKKGYTVGAEAS 150
GG ++L +P+ P+ + ++ +G+V V GKP + S+ G VGAE
Sbjct: 752 GGRKVLTPLPD----PLGLEELKDTGAGLVPEAVPGKPPFAEPDAVLSIVVGGAVGAETE 807
Query: 151 IILGQEQDSFGGNFEGSQSLVGDIG 175
+++ + G N ++ G G
Sbjct: 808 LVVPGHAEGLGSNLALAELQAGAEG 832
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,541,715
Number of Sequences: 37866
Number of extensions: 360473
Number of successful extensions: 625
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 17
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.