Guide to the Human Genome
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Name: WSCD1 Sequence: fasta or formatted (575aa) NCBI GI: 54792094
Description:

WSC domain containing 1

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         41           2
 C cysteine            3.3         19           1
 D aspartate           4.3         25           2
 E glutamate           6.1         35           2
 F phenylalanine       4.7         27           2
 G glycine             7.1         41           1
 H histidine           3.0         17           2
 I isoleucine          2.1         12           1
 K lysine              3.7         21           1
 L leucine            10.4         60           4
 M methionine          1.6          9           1
 N asparagine          3.1         18           2
 P proline             6.1         35           2
 Q glutamine           3.0         17           1
 R arginine           10.6         61           3
 S serine              7.0         40           2
 T threonine           4.7         27           1
 V valine              6.3         36           2
 W tryptophan          1.9         11           2
 Y tyrosine            4.0         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WSC domain containing 1 
WSCD2                 0.462   WSC domain containing 2 
KREMEN2               0.031   kringle-containing transmembrane protein 2 isoform b...
KREMEN2               0.031   kringle-containing transmembrane protein 2 isoform d...
KREMEN1               0.025   kringle-containing transmembrane protein 1 isoform 2...
KREMEN1               0.025   kringle-containing transmembrane protein 1 isoform ...
SULT2A1               0.010   bile-salt sulfotransferase 2A1 
WDFY4                 0.009   WDFY family member 4 
SULT1E1               0.008   sulfotransferase, estrogen-preferring 
LRP2                  0.006   low density lipoprotein-related protein 2 
MEGF6                 0.006   EGF-like-domain, multiple 3 
ADCY1                 0.005   adenylate cyclase 1 
RPS6KL1               0.004   ribosomal protein S6 kinase-like 1 
GDF11                 0.004   growth differentiation factor 11 precursor 
SGK493                0.004   protein kinase-like protein SgK493 
CHST1                 0.004   carbohydrate (keratan sulfate Gal-6) sulfotransferase...
C6orf142              0.004   hypothetical protein LOC90523 
SULT1C3               0.004   sulfotransferase family, cytosolic, 1C, member 3 [Ho...
ZNF831                0.004   zinc finger protein 831 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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