Search of human proteins with 51972198

Search of human proteins with 51972198

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|51972198 receptor transporting protein 2 [Homo sapiens]
         (225 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|51972198 receptor transporting protein 2 [Homo sapiens]            481   e-136
gi|114687645 receptor transporting protein 1 [Homo sapiens]           386   e-108
gi|13899263 transmembrane protein 7 [Homo sapiens]                    111   4e-25
gi|54607029 28kD interferon responsive protein [Homo sapiens]          95   4e-20
gi|134288863 hypothetical protein LOC285093 [Homo sapiens]             75   5e-14
gi|211971095 zygote arrest 1-like [Homo sapiens]                       33   0.15 
gi|5730124 zinc finger protein 217 [Homo sapiens]                      32   0.34 
gi|110611156 laminin, gamma 3 precursor [Homo sapiens]                 31   0.98 
gi|31563503 activity-dependent neuroprotector [Homo sapiens]           30   1.3  
gi|12229217 activity-dependent neuroprotector [Homo sapiens]           30   1.3  
gi|157954634 zinc finger protein 34 [Homo sapiens]                     30   1.3  
gi|20149635 p47 protein isoform a [Homo sapiens]                       29   2.8  
gi|62945417 dystrophia myotonica-containing WD repeat motif prot...    29   3.7  
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]                     28   6.3  
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]                     28   6.3  
gi|19923076 actin-related protein T1 [Homo sapiens]                    28   8.3  

>gi|51972198 receptor transporting protein 2 [Homo sapiens]
          Length = 225

 Score =  481 bits (1237), Expect = e-136
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 60
           MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW
Sbjct: 1   MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 60

Query: 61  CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 120
           CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
Sbjct: 61  CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 120

Query: 121 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT 180
           LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT
Sbjct: 121 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT 180

Query: 181 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF 225
           SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF
Sbjct: 181 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF 225


>gi|114687645 receptor transporting protein 1 [Homo sapiens]
          Length = 263

 Score =  386 bits (991), Expect = e-108
 Identities = 182/225 (80%), Positives = 197/225 (87%), Gaps = 4/225 (1%)

Query: 1   MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 60
           MC S+TT EWKKVFYEKME AKPADSW+LIIDPNLK + L+PGWKQYLE HASGRFHCSW
Sbjct: 37  MCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLKHNVLSPGWKQYLELHASGRFHCSW 96

Query: 61  CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 120
           CWHTWQS +VVILFHMFLDRA+RAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN
Sbjct: 97  CWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 156

Query: 121 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT 180
           LITSLREQCY E GGQYRIHVASR D+  HR EFCEACQEGIVHWKPSEKLLEEE TTYT
Sbjct: 157 LITSLREQCYGERGGQYRIHVASRQDNRRHRGEFCEACQEGIVHWKPSEKLLEEEATTYT 216

Query: 181 ----SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLS 221
                  +K + Q GSG+NF S+ WCLFWA++ LL++YLQFSF S
Sbjct: 217 FSRAPSPTKSQDQTGSGWNFCSIPWCLFWATVLLLIIYLQFSFRS 261


>gi|13899263 transmembrane protein 7 [Homo sapiens]
          Length = 232

 Score =  111 bits (278), Expect = 4e-25
 Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 9/157 (5%)

Query: 10  WKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAH 69
           WK++F E M   KP   W L  D  L P+ L PGW QY +Q    RF CS C   W SA 
Sbjct: 8   WKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSSCSRNWASAQ 66

Query: 70  VVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQC 129
           V++LFHM     +  G V+MRVF Q C +C     ++    +ENI  ++ NL+  + ++C
Sbjct: 67  VLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVFRILKKC 126

Query: 130 YEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEG 161
           Y    G++++   V    D    GPH ++ CEAC +G
Sbjct: 127 YR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQG 160


>gi|54607029 28kD interferon responsive protein [Homo sapiens]
          Length = 246

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 72/237 (30%), Positives = 106/237 (44%), Gaps = 37/237 (15%)

Query: 10  WKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAH 69
           W++ F E ++ AKP  +W L +D NL+   LA GWKQY +Q A G F CS C  +W SA 
Sbjct: 8   WEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSSCQRSWASAQ 66

Query: 70  VVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQC 129
           V IL H + +     G VRMR+F Q C +C  ++ +      ++   ++ NL+  + ++ 
Sbjct: 67  VQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQHILKKY 126

Query: 130 YEEDGGQYRIH-----VASRPDSGPHRAEFCEACQEGI-------VHWKPSEKLLEEEVT 177
           Y   G   R       +      G H    CEAC  GI          KPS+ LL    T
Sbjct: 127 Y---GNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPHLKT 183

Query: 178 TYTS--------------EASKPRAQAGSGYNFLS-------LRWCLFWASLCLLVV 213
             +S              ++++ +   GSGY  L        L  C+F   L  +VV
Sbjct: 184 GNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV 240


>gi|134288863 hypothetical protein LOC285093 [Homo sapiens]
          Length = 572

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 14/155 (9%)

Query: 10  WKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAH 69
           W   F   M   KP D W L+ + +L P  L  G  QYL    S R  C  C  TW SAH
Sbjct: 9   WASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLS-RLQCGHCPGTWDSAH 67

Query: 70  VVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQC 129
           V +LFH++ DRA   G V+MR++ Q C  C      +  +     +  +  L+  + + C
Sbjct: 68  VHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSRLVLHILQDC 125

Query: 130 YEEDGGQYRIHVASRPDSGPHRA--EFCEACQEGI 162
           Y +  G         P   P  A    CEAC+ G+
Sbjct: 126 YGDGPG---------PARHPREAYEGCCEACELGV 151


>gi|211971095 zygote arrest 1-like [Homo sapiens]
          Length = 321

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 26/115 (22%)

Query: 46  QYLEQHASGRFHCSWCWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLD 105
           Q+LE    G FHC  C   W+SA+V  +          +G+ ++  FKQLC +C      
Sbjct: 218 QFLEPKY-GYFHCKDCKTRWESAYVWCI----------SGTNKV-YFKQLCCKC------ 259

Query: 106 ESSMLEENIEGLVDNLITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQE 160
           + S     +E +     +     C      Q + H+  R    PHR E C  C++
Sbjct: 260 QKSFNPYRVEAIQCQTCSKSHCSC-----PQKKRHIDLR---RPHRQELCGRCKD 306


>gi|5730124 zinc finger protein 217 [Homo sapiens]
          Length = 1048

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 30/130 (23%)

Query: 57  HCSWCWHTWQSAHVVILFHMFLDRARRAG--SVRMRVFKQLCYECG---TARLDESSMLE 111
           HCS C   +++ H ++L      + RRAG  S  M V  +    C     A LDE+  ++
Sbjct: 376 HCSECGKAFRTYHQLVLHSRVHKKDRRAGAESPTMSVDGRQPGTCSPDLAAPLDENGAVD 435

Query: 112 ENIEGLVDNLITSLREQCY---EEDGGQYR----------------------IHVASRPD 146
               G  D     L E  +    +DGG+ +                      IH+ +   
Sbjct: 436 RGEGGSEDGSEDGLPEGIHLDKNDDGGKIKHLTSSRECSYCGKFFRSNYYLNIHLRTHTG 495

Query: 147 SGPHRAEFCE 156
             P++ EFCE
Sbjct: 496 EKPYKCEFCE 505


>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
          Length = 1575

 Score = 30.8 bits (68), Expect = 0.98
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 128 QCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKP 167
           + +   G   R H      +GPH    CE CQE   HW P
Sbjct: 341 ELFRSTGHGGRCHHCRDHTAGPH----CERCQENFYHWDP 376


>gi|31563503 activity-dependent neuroprotector [Homo sapiens]
          Length = 1102

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 131 EEDGGQYR-IHVASRPDSGPHRAEFCEACQEGIVHWK----PSE 169
           +EDG +Y  IH+   P    H A   E  Q+ +V WK    PSE
Sbjct: 930 KEDGSKYETIHLTEEPTKLMHNASDSEVDQDDVVEWKDGASPSE 973


>gi|12229217 activity-dependent neuroprotector [Homo sapiens]
          Length = 1102

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 131 EEDGGQYR-IHVASRPDSGPHRAEFCEACQEGIVHWK----PSE 169
           +EDG +Y  IH+   P    H A   E  Q+ +V WK    PSE
Sbjct: 930 KEDGSKYETIHLTEEPTKLMHNASDSEVDQDDVVEWKDGASPSE 973


>gi|157954634 zinc finger protein 34 [Homo sapiens]
          Length = 560

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 105 DESSMLEENIEGLVDN----LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCE 156
           D  S  E ++E LV+      +T    +   E GG  R+     PD  PH+ + CE
Sbjct: 146 DHISKSEGSLEKLVEQRGPRAVTLTNGESSRESGGNLRLLSRPVPDQRPHKCDICE 201


>gi|20149635 p47 protein isoform a [Homo sapiens]
          Length = 370

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 11/87 (12%)

Query: 119 DNLITSLREQCYEEDGGQ-----YRIHVASRPDSG------PHRAEFCEACQEGIVHWKP 167
           DN +TS R+  +++D  +      R +      SG      P +    E   +     K 
Sbjct: 69  DNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKE 128

Query: 168 SEKLLEEEVTTYTSEASKPRAQAGSGY 194
              +  E VT    E SKPR  AG GY
Sbjct: 129 HGAVAVERVTKSPGETSKPRPFAGGGY 155


>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
           [Homo sapiens]
          Length = 674

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 157 ACQEGIV-HW-KPSEKLLEEEVTTYTSEASKPRAQAGS 192
           ACQEG++  W +P +   +EE    T E S PR+ + S
Sbjct: 619 ACQEGLICTWARPGKAFTDEETEAQTGEGSWPRSPSKS 656


>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
          Length = 1173

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 87   VRMRVFKQLCYECGTARLDE--SSMLEENIEGLVDNLITSLREQCYEED 133
            +R+ + +  C  CG   LDE  +++  ENIE L   L+  ++ +  + +
Sbjct: 1074 IRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN 1122


>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
          Length = 1312

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 87   VRMRVFKQLCYECGTARLDE--SSMLEENIEGLVDNLITSLREQCYEED 133
            +R+ + +  C  CG   LDE  +++  ENIE L   L+  ++ +  + +
Sbjct: 1213 IRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN 1261


>gi|19923076 actin-related protein T1 [Homo sapiens]
          Length = 376

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 16/65 (24%)

Query: 10  WKKVFYEKMEVAKPADSWELIIDPNLKPSEL-------------APGWKQYLEQHASGRF 56
           WK +F  ++ V KP+    L+ +P+L P E+              PG+  YL  HA    
Sbjct: 89  WKHLFERELGV-KPSQQPVLMTEPSLNPREIREKLAEMMFETFSVPGF--YLSNHAVAAL 145

Query: 57  HCSWC 61
           + S C
Sbjct: 146 YASAC 150


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.135    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,612,475
Number of Sequences: 37866
Number of extensions: 439839
Number of successful extensions: 1063
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1050
Number of HSP's gapped (non-prelim): 16
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.