Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 13386480
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13386480 Nedd4 family interacting protein 1 [Homo sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13386480 Nedd4 family interacting protein 1 [Homo sapiens] 456 e-129
gi|239046738 Nedd4 family interacting protein 2 isoform 1 [Homo ... 246 8e-66
gi|239046743 Nedd4 family interacting protein 2 isoform 2 [Homo ... 201 3e-52
gi|22749117 hypothetical protein LOC152405 [Homo sapiens] 33 0.19
gi|110347463 human immunodeficiency virus type I enhancer bindin... 31 0.73
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 31 0.96
gi|21539663 praja 1 isoform c [Homo sapiens] 30 1.2
gi|74048537 praja 1 isoform b [Homo sapiens] 30 1.2
gi|41281725 praja 1 isoform a [Homo sapiens] 30 1.2
gi|33356179 transcription termination factor, RNA polymerase I [... 30 1.6
gi|154354979 myosin X [Homo sapiens] 30 1.6
gi|47933348 zinc finger, DHHC domain containing 13 isoform 2 [Ho... 29 2.8
gi|47933346 zinc finger, DHHC domain containing 13 isoform 1 [Ho... 29 2.8
gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo ... 29 3.6
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 29 3.6
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 28 4.7
gi|22538470 eomesodermin [Homo sapiens] 28 6.2
gi|55741641 kinase D-interacting substrate of 220 kDa [Homo sapi... 28 6.2
gi|38787970 tensin like C1 domain containing phosphatase isoform... 28 8.1
gi|38787957 tensin like C1 domain containing phosphatase isoform... 28 8.1
gi|38787941 tensin like C1 domain containing phosphatase isoform... 28 8.1
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 28 8.1
>gi|13386480 Nedd4 family interacting protein 1 [Homo sapiens]
Length = 221
Score = 456 bits (1173), Expect = e-129
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESG 60
MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESG
Sbjct: 1 MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESG 60
Query: 61 FPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFML 120
FPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFML
Sbjct: 61 FPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFML 120
Query: 121 TFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWL 180
TFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWL
Sbjct: 121 TFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWL 180
Query: 181 WWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY 221
WWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY
Sbjct: 181 WWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY 221
>gi|239046738 Nedd4 family interacting protein 2 isoform 1 [Homo
sapiens]
Length = 336
Score = 246 bits (629), Expect = 8e-66
Identities = 132/238 (55%), Positives = 155/238 (65%), Gaps = 30/238 (12%)
Query: 12 EPACGSRYQQLQNEEESGEPE---------------QAAGDAP--------PPYSSISAE 48
+P G RYQ L NEE++ E QAA AP PPYSSI+ E
Sbjct: 99 QPGTG-RYQVLLNEEDNSESSAIEQPPTSNPAPQIVQAASSAPALETDSSPPPYSSITVE 157
Query: 49 SAAYFDYKDESGF-PKPPSYNVATTLPSYDEAERTKAEATIPLVPG-----RDEDFVGRD 102
D + F P PP Y+VAT+LP+YDEAE+ KA A ++E+ RD
Sbjct: 158 VPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEECPPRD 217
Query: 103 DFDDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWIL 162
DF DADQLR+GNDGIFML FFMAF+FNW+GF LSFC+T + AGRYGAI GFGLSLIKWIL
Sbjct: 218 DFSDADQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSLIKWIL 277
Query: 163 IVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFI 220
IVRFS YF GYF+GQYWLWW+FLVLG LLF RGF+NY KVR M E+ + RTR F+
Sbjct: 278 IVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRYFFL 335
>gi|239046743 Nedd4 family interacting protein 2 isoform 2 [Homo
sapiens]
Length = 316
Score = 201 bits (512), Expect = 3e-52
Identities = 118/238 (49%), Positives = 137/238 (57%), Gaps = 50/238 (21%)
Query: 12 EPACGSRYQQLQNEEESGEPE---------------QAAGDAP--------PPYSSISAE 48
+P G RYQ L NEE++ E QAA AP PPYSSI+ E
Sbjct: 99 QPGTG-RYQVLLNEEDNSESSAIEQPPTSNPAPQIVQAASSAPALETDSSPPPYSSITVE 157
Query: 49 SAAYFDYKDESGF-PKPPSYNVATTLPSYDEAERTKAEATIPLVPG-----RDEDFVGRD 102
D + F P PP Y+VAT+LP+YDEAE+ KA A ++E+ RD
Sbjct: 158 VPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEECPPRD 217
Query: 103 DFDDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWIL 162
DF DADQLR+GNDGIFML FF GRYGAI GFGLSLIKWIL
Sbjct: 218 DFSDADQLRVGNDGIFMLAFF--------------------TGRYGAICGFGLSLIKWIL 257
Query: 163 IVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFI 220
IVRFS YF GYF+GQYWLWW+FLVLG LLF RGF+NY KVR M E+ + RTR F+
Sbjct: 258 IVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRYFFL 315
>gi|22749117 hypothetical protein LOC152405 [Homo sapiens]
Length = 536
Score = 33.1 bits (74), Expect = 0.19
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 24 NEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESGFPKPPSYNVATTLPSYDEAERTK 83
N + S E E PPY+ + A + F KD++ FP+ PS + + L E+T+
Sbjct: 403 NSKPSVEMETQNATTIPPYNPVDARFTSNFQAKDQALFPRLPS--ILSKLNYTSSQEKTQ 460
Query: 84 AEAT 87
A T
Sbjct: 461 AIVT 464
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 31.2 bits (69), Expect = 0.73
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 29 GEPEQAAGDAPPPYSSISAESAAYFDYKDESGFPKPPSYNVATTLPSYDEAERTKAEATI 88
G P G PY S+ + +++ S FP+ P+ V + LP + + + A I
Sbjct: 2170 GPPNLRRGLPQVPYFSLYGDQEGAYEHPGSSLFPEGPNDYVFSHLPLHSQQQ---VRAPI 2226
Query: 89 PLVP 92
P+VP
Sbjct: 2227 PMVP 2230
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 30.8 bits (68), Expect = 0.96
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 36 GDAPPPYSSISA--ESAAYFDYKDESGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPG 93
G + PP +S +A ES+ F SG PP PS + A T E+ VP
Sbjct: 84 GTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPS 143
Query: 94 RDEDFVGRDDFDDADQLRIGNDGIFMLTFFMA 125
GR++ D A L G++ MLT M+
Sbjct: 144 SGSS--GREE-DAASTLVTGSEYETMLTEIMS 172
>gi|21539663 praja 1 isoform c [Homo sapiens]
Length = 455
Score = 30.4 bits (67), Expect = 1.2
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 8 LAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAE---------SAAYFDYKDE 58
+AA+ SR Q L + ES E + PP + +SA SA+
Sbjct: 184 IAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAGAGA 243
Query: 59 SGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIF 118
S +Y PS E + + E IP + + D D D +L G+F
Sbjct: 244 SAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELM--QPGVF 301
Query: 119 ML 120
ML
Sbjct: 302 ML 303
>gi|74048537 praja 1 isoform b [Homo sapiens]
Length = 588
Score = 30.4 bits (67), Expect = 1.2
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 8 LAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAE---------SAAYFDYKDE 58
+AA+ SR Q L + ES E + PP + +SA SA+
Sbjct: 317 IAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAGAGA 376
Query: 59 SGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIF 118
S +Y PS E + + E IP + + D D D +L G+F
Sbjct: 377 SAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELM--QPGVF 434
Query: 119 ML 120
ML
Sbjct: 435 ML 436
>gi|41281725 praja 1 isoform a [Homo sapiens]
Length = 643
Score = 30.4 bits (67), Expect = 1.2
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 8 LAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAE---------SAAYFDYKDE 58
+AA+ SR Q L + ES E + PP + +SA SA+
Sbjct: 372 IAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAGAGA 431
Query: 59 SGFPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIF 118
S +Y PS E + + E IP + + D D D +L G+F
Sbjct: 432 SAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELM--QPGVF 489
Query: 119 ML 120
ML
Sbjct: 490 ML 491
>gi|33356179 transcription termination factor, RNA polymerase I
[Homo sapiens]
Length = 905
Score = 30.0 bits (66), Expect = 1.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 24 NEEESGEPEQAAGDAPPPY--SSISAESAAYFDYKDESGFPKPPSYNVATTLPSYDE 78
NE + + A GD PP Y + S A Y + + FP+ Y TTLP E
Sbjct: 781 NEIDWEDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKE 837
>gi|154354979 myosin X [Homo sapiens]
Length = 2058
Score = 30.0 bits (66), Expect = 1.6
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 33 QAAGDAPPP----------YSSISAESAAYFDYKDESGFPKPPSYNVATTLPSYDEAERT 82
Q AGD P P Y + S + + + G P Y + + A R
Sbjct: 1077 QNAGDLPSPDGDYDYDQDDYEDGAITSGSSVTFSNSYGSQWSPDYRCSVGTYNSSGAYRF 1136
Query: 83 KAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIF---MLTFFMAFLF 128
+E +EDF R FD D+L D ++ L +F +FL+
Sbjct: 1137 SSEGAQSSFEDSEEDFDSR--FDTDDELSYRRDSVYSCVTLPYFHSFLY 1183
>gi|47933348 zinc finger, DHHC domain containing 13 isoform 2 [Homo
sapiens]
Length = 492
Score = 29.3 bits (64), Expect = 2.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 151 SGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLF 192
+ F LS + WI + F +FP ++ ++F ++ FL F
Sbjct: 219 TAFLLSSVFWIFMTWFILFFPDLAGAPFYFSFIFSIVAFLYF 260
>gi|47933346 zinc finger, DHHC domain containing 13 isoform 1 [Homo
sapiens]
Length = 622
Score = 29.3 bits (64), Expect = 2.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 151 SGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLF 192
+ F LS + WI + F +FP ++ ++F ++ FL F
Sbjct: 349 TAFLLSSVFWIFMTWFILFFPDLAGAPFYFSFIFSIVAFLYF 390
>gi|239742265 PREDICTED: hypothetical protein XP_002342467 [Homo
sapiens]
Length = 154
Score = 28.9 bits (63), Expect = 3.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 62 PKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGI 117
P PP + L S+ + + + PL PG D+DF+ DDF A L GND +
Sbjct: 85 PSPPQ-PMNKVLGSHPQRLQNEVHTASPLHPGGDDDFL--DDFGVARGL--GNDNV 135
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 28.9 bits (63), Expect = 3.6
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 25 EEESGEPEQAAGD-----APPPYSSISAESAAYFDYKDESGFP---KPPSYNVATTLPSY 76
EEE GE E+A G +PP + S E A K+E+ P K P A +
Sbjct: 485 EEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEV 544
Query: 77 DEAERTKAEA 86
E+ K+ A
Sbjct: 545 KSPEKAKSPA 554
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 28.5 bits (62), Expect = 4.7
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 20 QQLQNEEESGEPEQAAGDA-------------PPPYSSISAESAAYFDYKDESGFPKPPS 66
++ + EEE GE E+ G+ P S+ +SA D+++E + PS
Sbjct: 1360 EEEEEEEEEGEEEEGGGNVEKDPDGAKSQEKEEPEISTEKEDSARLDDHEEEEEEDEEPS 1419
Query: 67 YNVATTLPSYDEAERTKAE 85
+N D++ AE
Sbjct: 1420 HNEDHDADDEDDSHMESAE 1438
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 28.1 bits (61), Expect = 6.2
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 2 ALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESGF 61
A A AA AA A +RY +S E+ +P P S A + F Y+ +G
Sbjct: 117 AAAAAAAAAAAAAATARYSM-----DSLSSERYYLQSPGPQGSELAAPCSLFPYQAAAGA 171
Query: 62 PKPPSY 67
P P Y
Sbjct: 172 PHGPVY 177
>gi|55741641 kinase D-interacting substrate of 220 kDa [Homo
sapiens]
Length = 1771
Score = 28.1 bits (61), Expect = 6.2
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 126 FLFNWIGFFLSFCLTTSAAGRYGAISGF----------GLSLIKWILIVRFSTYFPGYFD 175
F F+W+ FL+ L G G + F LS + + I YF G +
Sbjct: 495 FQFSWLIVFLTLLL----CGGLGLLFAFTVHPNLGIAVSLSFLALLYIFFIVIYFGGRRE 550
Query: 176 GQYWLW-WVFLV-----LGFLLFLRGFINYAKVRKMPETFSNLPRTRVLF 219
G+ W W WV +G+L L + + ++PE + R LF
Sbjct: 551 GESWNWAWVLSTRLARHIGYLELLLKLM-FVNPPELPEQTTKALPVRFLF 599
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 27.7 bits (60), Expect = 8.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 13 PACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAES 49
P GS Y Q+Q P + PPP S+S++S
Sbjct: 353 PLDGSPYAQVQRPPRQTPPAPSPEPPPPPMLSVSSDS 389
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 27.7 bits (60), Expect = 8.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 13 PACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAES 49
P GS Y Q+Q P + PPP S+S++S
Sbjct: 477 PLDGSPYAQVQRPPRQTPPAPSPEPPPPPMLSVSSDS 513
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 27.7 bits (60), Expect = 8.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 13 PACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAES 49
P GS Y Q+Q P + PPP S+S++S
Sbjct: 487 PLDGSPYAQVQRPPRQTPPAPSPEPPPPPMLSVSSDS 523
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 27.7 bits (60), Expect = 8.1
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 23 QNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESGFPKPPSYNVATTLPS 75
QN S AA APP + I K E P PP +V T PS
Sbjct: 444 QNTSPSSPAAPAASSAPPMFKPIFTAPP-----KSEKEGPTPPGPSVTATAPS 491
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.141 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,917,382
Number of Sequences: 37866
Number of extensions: 404509
Number of successful extensions: 2000
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1979
Number of HSP's gapped (non-prelim): 26
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.