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Search of human proteins with 13376759
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376759 hypothetical protein LOC80231 [Homo sapiens]
(301 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376759 hypothetical protein LOC80231 [Homo sapiens] 593 e-170
gi|115527120 nebulin [Homo sapiens] 32 0.69
gi|188497718 catenin, alpha 3 [Homo sapiens] 31 1.2
gi|188497716 catenin, alpha 3 [Homo sapiens] 31 1.2
gi|89941470 ankyrin repeat domain 34 [Homo sapiens] 30 2.0
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 30 2.6
gi|169212026 PREDICTED: keratin associated protein [Homo sapiens] 30 3.4
gi|169211819 PREDICTED: keratin associated protein [Homo sapiens] 30 3.4
gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo ... 30 3.4
gi|56550051 ubiquitin specific protease 39 [Homo sapiens] 30 3.4
gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Ho... 29 5.8
gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Ho... 29 5.8
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 29 5.8
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 29 5.8
gi|12707562 period 2 [Homo sapiens] 28 7.6
gi|157426879 nuclear protein localization 4 [Homo sapiens] 28 7.6
gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo s... 28 7.6
gi|110347451 platelet/endothelial cell adhesion molecule [Homo s... 28 9.9
gi|224809578 RAP1 GTPase activating protein isoform a [Homo sapi... 28 9.9
gi|98986331 pentatricopeptide repeat domain 2 [Homo sapiens] 28 9.9
gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens] 28 9.9
>gi|13376759 hypothetical protein LOC80231 [Homo sapiens]
Length = 301
Score = 593 bits (1529), Expect = e-170
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MLSEGYLSGLEYWNDIHWSCASYNEQVAGEKEEETNSVATLSYSSVDETQVRSLYVSCKS 60
MLSEGYLSGLEYWNDIHWSCASYNEQVAGEKEEETNSVATLSYSSVDETQVRSLYVSCKS
Sbjct: 1 MLSEGYLSGLEYWNDIHWSCASYNEQVAGEKEEETNSVATLSYSSVDETQVRSLYVSCKS 60
Query: 61 SGKFISSVHSRESQHSRSQRVTVLQTNPNPVFESPNLAAVEICRDASRETYLVPSSCKSI 120
SGKFISSVHSRESQHSRSQRVTVLQTNPNPVFESPNLAAVEICRDASRETYLVPSSCKSI
Sbjct: 61 SGKFISSVHSRESQHSRSQRVTVLQTNPNPVFESPNLAAVEICRDASRETYLVPSSCKSI 120
Query: 121 CKNYNDLQIAGGQVMAINSVTTDFPSESSFEYGPLLKSSEIPLPMEDSISTQPSDFPQKP 180
CKNYNDLQIAGGQVMAINSVTTDFPSESSFEYGPLLKSSEIPLPMEDSISTQPSDFPQKP
Sbjct: 121 CKNYNDLQIAGGQVMAINSVTTDFPSESSFEYGPLLKSSEIPLPMEDSISTQPSDFPQKP 180
Query: 181 IQRYSSYWRITSIKEKSSLQMQNPISNAVLNEYLEQKVVELYKQYIMDTVFHDSSPTQIL 240
IQRYSSYWRITSIKEKSSLQMQNPISNAVLNEYLEQKVVELYKQYIMDTVFHDSSPTQIL
Sbjct: 181 IQRYSSYWRITSIKEKSSLQMQNPISNAVLNEYLEQKVVELYKQYIMDTVFHDSSPTQIL 240
Query: 241 ASELIMTSVDQISLQVSREKNLETSKARDIVFSRLLQLMSTEITEISTPSLHISQYSNVN 300
ASELIMTSVDQISLQVSREKNLETSKARDIVFSRLLQLMSTEITEISTPSLHISQYSNVN
Sbjct: 241 ASELIMTSVDQISLQVSREKNLETSKARDIVFSRLLQLMSTEITEISTPSLHISQYSNVN 300
Query: 301 P 301
P
Sbjct: 301 P 301
>gi|115527120 nebulin [Homo sapiens]
Length = 6669
Score = 32.0 bits (71), Expect = 0.69
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 6 YLSGLEYWNDIHW--------SCASYNEQVAGEKEEETNSVATLSYSSVDETQVRSLYVS 57
Y + LE+ I W + A + + EK+ T + TL+++ VD+ R YV+
Sbjct: 4112 YKADLEWLRGIGWMPNDSVSVNHAKHAADIFSEKKYRTK-IETLNFTPVDD---RVDYVT 4167
Query: 58 CKSSGKFISSVHSRESQHSRSQRVTVLQT 86
K SG+ + + R+ ++ + T+ +T
Sbjct: 4168 AKQSGEILDDIKYRKDWNATKSKYTLTET 4196
>gi|188497718 catenin, alpha 3 [Homo sapiens]
Length = 895
Score = 31.2 bits (69), Expect = 1.2
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 189 RITSIKEKSSLQMQNPISNAVLNEYLEQKVVELYKQYIMDTVFHDSSPTQILASELIMTS 248
R+ + + + Q +P L YLEQ ++ I V + Q L ELIM++
Sbjct: 744 RMDVLARQIANQCPDPSCKQDLLAYLEQIKFYSHQLKICSQV---KAEIQNLGGELIMSA 800
Query: 249 VDQISLQVSREKNLETSKARDIVFSRLLQLMSTEITEISTPS 290
+D ++ + KNL + + + ++ + ST+I I +P+
Sbjct: 801 LDSVTSLIQAAKNLMNAVVQTV---KMSYIASTKIIRIQSPA 839
>gi|188497716 catenin, alpha 3 [Homo sapiens]
Length = 895
Score = 31.2 bits (69), Expect = 1.2
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 189 RITSIKEKSSLQMQNPISNAVLNEYLEQKVVELYKQYIMDTVFHDSSPTQILASELIMTS 248
R+ + + + Q +P L YLEQ ++ I V + Q L ELIM++
Sbjct: 744 RMDVLARQIANQCPDPSCKQDLLAYLEQIKFYSHQLKICSQV---KAEIQNLGGELIMSA 800
Query: 249 VDQISLQVSREKNLETSKARDIVFSRLLQLMSTEITEISTPS 290
+D ++ + KNL + + + ++ + ST+I I +P+
Sbjct: 801 LDSVTSLIQAAKNLMNAVVQTV---KMSYIASTKIIRIQSPA 839
>gi|89941470 ankyrin repeat domain 34 [Homo sapiens]
Length = 496
Score = 30.4 bits (67), Expect = 2.0
Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 15/140 (10%)
Query: 47 DETQVRSLYVSCKSSGKFISSVHSRESQHSRSQRVTVLQTNPNPVFESPNLAAVEICRDA 106
D + +L +CK+ G + + + S + L + P+P E P A+
Sbjct: 123 DRETLATLLDACKAKGTEVIIITTDTSPSGTKKTRQYLNSPPSPGVEDPAPASPS----- 177
Query: 107 SRETYLVPSSCKSICKNYNDLQIAGGQVMAINSVTTDFPSESSFEYGPLLKSSEIPLPME 166
P C S + GG+ M + FE+ PL K + P P E
Sbjct: 178 -------PGFCTSPSEIQLQTAGGGGRGMLSPRAQEEEEKRDVFEF-PLPKPPDDPSPSE 229
Query: 167 DSISTQPSDFPQKPIQRYSS 186
+P P KP++R +S
Sbjct: 230 P--LPKPPRHPPKPLKRLNS 247
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 30.0 bits (66), Expect = 2.6
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 3 SEGYLSGLEYWNDIHWSCASYNEQVAGEKEEETNSVATLSYSSVDETQVRSLYVSCKSSG 62
+EG L + H S + E+ + EE+ V + DE + S V +
Sbjct: 2076 AEGVEPALGNEKEAHRSTPPFPEE---KPLEESKMVQSKVIDDADEGKKPSPEVKIPTQR 2132
Query: 63 KFISSVHSRESQHSRSQRVT 82
K ISS+H+RE Q S VT
Sbjct: 2133 KPISSIHAREPQSPESPEVT 2152
>gi|169212026 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 29.6 bits (65), Expect = 3.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 81 VTVLQTNPNPVFESPNLAAVEICRDASRETYLVPSSCKSIC 121
V+ T+ P+ SP +A ICR T+ +PSS K C
Sbjct: 347 VSCPSTSCRPLSCSPGSSASAICRPTCPRTFYIPSSSKRPC 387
>gi|169211819 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 29.6 bits (65), Expect = 3.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 81 VTVLQTNPNPVFESPNLAAVEICRDASRETYLVPSSCKSIC 121
V+ T+ P+ SP +A ICR T+ +PSS K C
Sbjct: 347 VSCPSTSCRPLSCSPGSSASAICRPTCPRTFYIPSSSKRPC 387
>gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo
sapiens]
Length = 517
Score = 29.6 bits (65), Expect = 3.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 81 VTVLQTNPNPVFESPNLAAVEICRDASRETYLVPSSCKSIC 121
V+ T+ P+ SP +A ICR T+ +PSS K C
Sbjct: 347 VSCPSTSCRPLSCSPGSSASAICRPTCPRTFYIPSSSKRPC 387
>gi|56550051 ubiquitin specific protease 39 [Homo sapiens]
Length = 565
Score = 29.6 bits (65), Expect = 3.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 195 EKSSLQMQNPISNAVLNEYLEQKVVELYKQYIMD---TVFHDSSPTQ 238
EK+ + PI+N L EYL ++V ++K D + HD P++
Sbjct: 465 EKNPTIVNFPITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSE 511
>gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
sapiens]
Length = 880
Score = 28.9 bits (63), Expect = 5.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 3 SEGYLSGLEYWNDIHWSCASYNEQVAGEKEEETNS---VATLSYSSVDETQ 50
S+G +SG W+++ C S N A K+EE +S TL+ + V + Q
Sbjct: 734 SKGAISGRSRWSNLEKVCTSVNLNKACRKQEELDSSMEALTLNLTEVVKRQ 784
>gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
sapiens]
Length = 880
Score = 28.9 bits (63), Expect = 5.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 3 SEGYLSGLEYWNDIHWSCASYNEQVAGEKEEETNS---VATLSYSSVDETQ 50
S+G +SG W+++ C S N A K+EE +S TL+ + V + Q
Sbjct: 734 SKGAISGRSRWSNLEKVCTSVNLNKACRKQEELDSSMEALTLNLTEVVKRQ 784
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 28.9 bits (63), Expect = 5.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 139 SVTTDFPSESSFEYGPLLKSS-EIPLPMEDSISTQPSDFPQKP 180
S T DFP S+ E L + ++P + DS T+P + P+ P
Sbjct: 323 STTMDFPESSAIEALRLPEQPVDVPSEIADSSMTRPQELPELP 365
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 28.9 bits (63), Expect = 5.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 139 SVTTDFPSESSFEYGPLLKSS-EIPLPMEDSISTQPSDFPQKP 180
S T DFP S+ E L + ++P + DS T+P + P+ P
Sbjct: 323 STTMDFPESSAIEALRLPEQPVDVPSEIADSSMTRPQELPELP 365
>gi|12707562 period 2 [Homo sapiens]
Length = 1255
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 17 HWSCASYNEQVAGEKEEETNSVATLSYSSVDETQVRSLYVSCKSSGKFISSVH-SRESQH 75
H + Y + E S + S S+ E R CK+ K + H S ES
Sbjct: 476 HSGSSGYGSLGSNGSHEHLMSQTSSSDSNGHEDSRRRRAEICKNGNKTKNRSHYSHESGE 535
Query: 76 SRSQRVTVLQTNP 88
+ + VT +QTNP
Sbjct: 536 QKKKSVTEMQTNP 548
>gi|157426879 nuclear protein localization 4 [Homo sapiens]
Length = 608
Score = 28.5 bits (62), Expect = 7.6
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 15/185 (8%)
Query: 112 LVPSSCKSICKNYNDLQIAGGQVMAINSVTTDFPSESSFEYGPLLKSSEIPLPMEDSIST 171
LV C CK+ +L A + + D + ++G + PLP+E I
Sbjct: 394 LVRDECLLPCKDAPELGYA--KESSSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIID 451
Query: 172 QPSDFPQKPIQRYSSYWRITSIKEKSSLQMQNPISNAVLNEYLEQKVVELYKQYIMDTVF 231
+ FP+ P+ +S I+ + L + L YL Q ++ I D F
Sbjct: 452 ITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHS--LATYLSQNTSSVFLDTISD--F 507
Query: 232 HDSSPTQILASELIMTSVDQISLQV----SREKNLETSKARDIVFSRLLQLMSTEITEIS 287
H L + +M D ISL + +R + L + R ++ + QL ST ++
Sbjct: 508 H---LLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSEQWATIEQLCSTVGGQL- 563
Query: 288 TPSLH 292
P LH
Sbjct: 564 -PGLH 567
>gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo
sapiens]
Length = 770
Score = 28.5 bits (62), Expect = 7.6
Identities = 53/241 (21%), Positives = 92/241 (38%), Gaps = 45/241 (18%)
Query: 31 KEEETNSVATLSYSSVDETQVRSLYVSCKSSGKFISSVHSRESQHSRSQRVTVLQTNPNP 90
K++ S ++ S SS DE S SS SS H R +H R++ +++ +
Sbjct: 469 KKKRRKSTSSSSVSSADE--------SVSSSSSSSSSGHKRHKKHKRNRS----ESSRSS 516
Query: 91 VFESPNLAAVEICRDASRETYLVPSSCKSICKN----------------YNDLQIAGGQV 134
S ++ +I ++ E Y VP++ + N Y QI
Sbjct: 517 RRHSSRASSNQIDQNRKDECYPVPANTSASFLNHKQEVEKLLGKQDRLQYEKTQIKEKDR 576
Query: 135 MAINSVTTDFPSESSFEYGPLLKSSEIPLPMEDSISTQP-SDFPQKPIQRYSSYWRITSI 193
++S + + P + SE P +S TQ S +KP Y S +S
Sbjct: 577 CPLSSSSLEIPDDFG-------GRSEDPRDFYNSYKTQAGSSKTEKP---YKSERHFSSR 626
Query: 194 KEKSSLQMQNPISNAVLNEYLEQKV---VELYKQYIMDTVFHDSSPTQILASELIMTSVD 250
+ S +N E+ + E Y+++ +V H +SP +SE SV+
Sbjct: 627 RNSSDSFCRNSEDKIYGYRRFEKDIEGRKEHYRRWEPGSVRHSTSPA---SSEYSWKSVE 683
Query: 251 Q 251
+
Sbjct: 684 K 684
>gi|110347451 platelet/endothelial cell adhesion molecule [Homo
sapiens]
Length = 738
Score = 28.1 bits (61), Expect = 9.9
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 48 ETQVRSLYVSCKSSGKFISSVHSRESQHSRSQRVTVLQTNPNPVF 92
E Q R L C++ + IS +H + S+ ++S+ VTV ++ P F
Sbjct: 196 EEQDRVLSFRCQA--RIISGIHMQTSESTKSELVTVTESFSTPKF 238
>gi|224809578 RAP1 GTPase activating protein isoform a [Homo
sapiens]
Length = 727
Score = 28.1 bits (61), Expect = 9.9
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 112 LVPSSCKSICKNYNDLQIAGGQVMAINSVTTDFPSESSFEYGPLLKSSE--IPLPMEDSI 169
LVPS S+ DL I + E + P LK+ E IP P +
Sbjct: 47 LVPSYTPSLYPKNTDL------FEMIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSVHEV 100
Query: 170 STQPSDFPQKPIQRYSSYW------RITSIKEKSSLQ 200
+ FP + ++ YW ITSI E LQ
Sbjct: 101 LGREGPFPLILLPQFGGYWIEGTNHEITSIPETEPLQ 137
>gi|98986331 pentatricopeptide repeat domain 2 [Homo sapiens]
Length = 388
Score = 28.1 bits (61), Expect = 9.9
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 214 LEQKVVELYKQYIMDTVFHDSSPTQILASELIMTSVDQISLQVSRE-KNLETSKARD--- 269
LE+ VEL K + F DS+ IL L + + +LQV E KN + +D
Sbjct: 145 LEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGKYKSALQVLIEMKNQDVKFTKDTYV 204
Query: 270 IVFSRLLQLMSTEITEIST 288
+ F+ +L S E +I T
Sbjct: 205 LAFAICYKLNSPESFKICT 223
>gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens]
Length = 2354
Score = 28.1 bits (61), Expect = 9.9
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 31/183 (16%)
Query: 13 WNDIHWSCASYNEQVAGEKEEETNSVATLSYSSVDETQVRSLYVSCKSSGKFISS---VH 69
W IH++ ++ N AG+ + + A+ +V + + S F+ +H
Sbjct: 2078 WVKIHFNRSNQNSS-AGDNDADGQGSASAPLMAVPARYGFNSHQGTSDSSLFLEESKVLH 2136
Query: 70 SRESQHSRSQRVTVLQTNPNPVFESPNLAAVEICRDASRETYLVPSSCKSICKNYNDLQI 129
+RE R+ ++T L N V+I + R L S K I
Sbjct: 2137 ARELPKKRNFQLTFL-----------NHDVVKISPKSVRNKLLESQSKKKI--------- 2176
Query: 130 AGGQVMAINSVTTDFPSESSFEYGPLLKSSEIPLPMEDS---ISTQPSDFPQKPIQRYSS 186
G+ + +S FP + Y P++ + E I T+PSD +K I +YS
Sbjct: 2177 -HGKRVTTSSNKLGFPKKV---YKPIILQQKPRKASEKQSIWIRTKPSDIIRKYISKYSV 2232
Query: 187 YWR 189
+ R
Sbjct: 2233 FLR 2235
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.124 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,621,076
Number of Sequences: 37866
Number of extensions: 435988
Number of successful extensions: 1092
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 22
length of query: 301
length of database: 18,247,518
effective HSP length: 102
effective length of query: 199
effective length of database: 14,385,186
effective search space: 2862652014
effective search space used: 2862652014
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.