Guide to the Human Genome
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Name: CXorf21 Sequence: fasta or formatted (301aa) NCBI GI: 13376759
Description:

hypothetical protein LOC80231

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         11           2
 C cysteine            1.7          5           1
 D aspartate           3.7         11           1
 E glutamate           8.3         25           3
 F phenylalanine       2.3          7           1
 G glycine             2.3          7           2
 H histidine           1.7          5           1
 I isoleucine          6.6         20           1
 K lysine              4.3         13           1
 L leucine             8.0         24           2
 M methionine          2.3          7           1
 N asparagine          5.0         15           1
 P proline             5.0         15           1
 Q glutamine           6.3         19           1
 R arginine            3.7         11           1
 S serine             16.9         51           2
 T threonine           5.6         17           2
 V valine              7.0         21           2
 W tryptophan          1.0          3           1
 Y tyrosine            4.7         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC80231 
NEB                   0.012   nebulin 
CTNNA3                0.011   catenin, alpha 3 
CTNNA3                0.011   catenin, alpha 3 
ANKRD34A              0.009   ankyrin repeat domain 34 
CMYA5                 0.009   cardiomyopathy associated 5 
LOC100131696          0.009   PREDICTED: keratin associated protein 
LOC100131696          0.009   PREDICTED: keratin associated protein 
LOC100288060          0.009   PREDICTED: hypothetical protein XP_002343557 
USP39                 0.009   ubiquitin specific protease 39 
PIK3R5                0.007   phosphoinositide-3-kinase, regulatory subunit 5 [Ho...
PIK3R5                0.007   phosphoinositide-3-kinase, regulatory subunit 5 [Ho...
SON                   0.007   SON DNA-binding protein isoform F 
SON                   0.007   SON DNA-binding protein isoform B 
PER2                  0.005   period 2 
NPLOC4                0.005   nuclear protein localization 4 
TTC14                 0.005   tetratricopeptide repeat domain 14 isoform a 
PECAM1                0.005   platelet/endothelial cell adhesion molecule 
RAP1GAP               0.005   RAP1 GTPase activating protein isoform a 
PTCD2                 0.005   pentatricopeptide repeat domain 2 
ZDBF2                 0.005   zinc finger, DBF-type containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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