Guide to the Human Genome
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Name: NUP85 Sequence: fasta or formatted (656aa) NCBI GI: 13376259
Description:

nucleoporin 85

Referenced in:

Centrosome

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         42           2
 C cysteine            2.3         15           1
 D aspartate           5.6         37           3
 E glutamate           8.1         53           2
 F phenylalanine       4.0         26           1
 G glycine             4.4         29           2
 H histidine           2.7         18           1
 I isoleucine          5.3         35           2
 K lysine              4.3         28           2
 L leucine            14.9         98           3
 M methionine          3.4         22           2
 N asparagine          3.2         21           2
 P proline             3.7         24           1
 Q glutamine           4.0         26           1
 R arginine            6.1         40           2
 S serine              8.5         56           2
 T threonine           4.0         26           2
 V valine              4.7         31           1
 W tryptophan          1.8         12           2
 Y tyrosine            2.6         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleoporin 85 
ERCC6                 0.007   excision repair cross-complementing rodent repair def...
VARS2                 0.006   valyl-tRNA synthetase 2, mitochondrial 
GOPC                  0.005   golgi associated PDZ and coiled-coil motif containing...
OAS2                  0.005   2'-5'-oligoadenylate synthetase 2 isoform 2 
OAS2                  0.005   2'-5'-oligoadenylate synthetase 2 isoform 1 
NLRP7                 0.005   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.005   NACHT, leucine rich repeat and PYD containing 7 isof...
GOPC                  0.005   golgi associated PDZ and coiled-coil motif containin...
SAMD4B                0.004   sterile alpha motif domain containing 4B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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