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Search of human proteins with 51558777
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51558777 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform b precursor [Homo sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51558777 ATP synthase, H+ transporting, mitochondrial F0 comp... 281 7e-77
gi|51558774 ATP synthase, H+ transporting, mitochondrial F0 comp... 267 1e-72
gi|51558768 ATP synthase, H+ transporting, mitochondrial F0 comp... 265 5e-72
gi|55770862 thyroglobulin [Homo sapiens] 30 0.65
gi|239757471 PREDICTED: hypothetical protein [Homo sapiens] 30 0.65
gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo ... 30 0.65
gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo ... 30 0.65
gi|239753264 PREDICTED: hypothetical protein [Homo sapiens] 27 3.2
gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo ... 27 3.2
gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo ... 27 3.2
gi|157819143 IgLON family member 5 [Homo sapiens] 27 5.5
>gi|51558777 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform b precursor [Homo sapiens]
Length = 127
Score = 281 bits (720), Expect = 7e-77
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
Sbjct: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
Query: 121 ETSNICC 127
ETSNICC
Sbjct: 121 ETSNICC 127
>gi|51558774 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform a precursor [Homo sapiens]
Length = 215
Score = 267 bits (683), Expect = 1e-72
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
Sbjct: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
Query: 121 E 121
E
Sbjct: 121 E 121
>gi|51558768 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform c precursor [Homo sapiens]
Length = 136
Score = 265 bits (678), Expect = 5e-72
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
Sbjct: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 29.6 bits (65), Expect = 0.65
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 35 SCDSRYFWGWLNAVFNKVDYDRIRD-VGPDRAASEWLLRCGAMVRYHGQE 83
SCD F+ W + + D+ RD +G +A S LRC VR HGQ+
Sbjct: 1626 SCD---FYAWTSDNVACMTSDQKRDALGNSKATSFGSLRCQVKVRSHGQD 1672
>gi|239757471 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 0.65
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
V+E L C + + +I+ +LCG P C SR F
Sbjct: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
>gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo
sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 0.65
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
V+E L C + + +I+ +LCG P C SR F
Sbjct: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
>gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo
sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 0.65
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
V+E L C + + +I+ +LCG P C SR F
Sbjct: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
>gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 27.3 bits (59), Expect = 3.2
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 63 DRAASEWLLRCGAMVRYHGQERWQKDYNH 91
DR AS WL CGA+ G DYNH
Sbjct: 250 DREASWWLCECGAL----GMSDRVGDYNH 274
>gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo
sapiens]
Length = 444
Score = 27.3 bits (59), Expect = 3.2
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 63 DRAASEWLLRCGAMVRYHGQERWQKDYNH 91
DR AS WL CGA+ G DYNH
Sbjct: 250 DREASWWLCECGAL----GMSDRVGDYNH 274
>gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
sapiens]
Length = 480
Score = 27.3 bits (59), Expect = 3.2
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 63 DRAASEWLLRCGAMVRYHGQERWQKDYNH 91
DR AS WL CGA+ G DYNH
Sbjct: 250 DREASWWLCECGAL----GMSDRVGDYNH 274
>gi|157819143 IgLON family member 5 [Homo sapiens]
Length = 336
Score = 26.6 bits (57), Expect = 5.5
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 70 LLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMETSNICC 127
LLRC AM +W KD L +G + K+Q + T S ++ N C
Sbjct: 235 LLRCEAMAVPPADFQWYKDDRLLSSGTAEGLKVQT-ERTRSMLLFANVSARHYGNYTC 291
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,121,935
Number of Sequences: 37866
Number of extensions: 200183
Number of successful extensions: 436
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 11
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.