Guide to the Human Genome
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Search of human proteins with 50409707

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
         (341 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]            668   0.0  
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]            660   0.0  
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]            657   0.0  
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]            632   0.0  
gi|33356174 pinin, desmosome associated protein [Homo sapiens]         77   2e-14
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         76   5e-14
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]     73   4e-13
gi|42560244 peptidylprolyl isomerase G [Homo sapiens]                  72   7e-13
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...    68   1e-11
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...    68   1e-11
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    68   1e-11
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    68   1e-11
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...    66   4e-11
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...    66   4e-11
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...    66   4e-11
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...    66   4e-11
gi|40807452 peroxisome proliferator-activated receptor gamma, co...    65   7e-11
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     65   9e-11
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ...    64   2e-10
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [...    64   2e-10
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi...    64   3e-10
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        64   3e-10
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]           63   3e-10
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]           63   3e-10
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]      63   4e-10
gi|52426743 cisplatin resistance-associated overexpressed protei...    62   6e-10
gi|19923485 cisplatin resistance-associated overexpressed protei...    62   6e-10
gi|27734775 hypothetical protein LOC286499 [Homo sapiens]              62   7e-10
gi|168229156 NFKB activating protein [Homo sapiens]                    62   1e-09
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]    62   1e-09

>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
          Length = 341

 Score =  668 bits (1724), Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
           MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1   MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS 180
           RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS 180

Query: 181 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240

Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
           LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR
Sbjct: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300

Query: 301 LIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 341
           LIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP
Sbjct: 301 LIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 341


>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
          Length = 352

 Score =  660 bits (1702), Expect = 0.0
 Identities = 341/352 (96%), Positives = 341/352 (96%), Gaps = 11/352 (3%)

Query: 1   MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
           MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1   MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ-----------ERSK 169
           RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ           ERSK
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSK 180

Query: 170 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 229
           QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG
Sbjct: 181 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240

Query: 230 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 289
           KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR
Sbjct: 241 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 300

Query: 290 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 341
           KVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP
Sbjct: 301 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 352


>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
          Length = 360

 Score =  657 bits (1694), Expect = 0.0
 Identities = 341/360 (94%), Positives = 341/360 (94%), Gaps = 19/360 (5%)

Query: 1   MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
           MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1   MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ--------------- 165
           RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ               
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS 180

Query: 166 ----ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 221
               ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK
Sbjct: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 240

Query: 222 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 281
           RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW
Sbjct: 241 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 300

Query: 282 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 341
           DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP
Sbjct: 301 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 360


>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
          Length = 338

 Score =  632 bits (1630), Expect = 0.0
 Identities = 323/323 (100%), Positives = 323/323 (100%)

Query: 1   MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
           MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1   MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS 180
           RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS 180

Query: 181 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240

Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
           LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR
Sbjct: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300

Query: 301 LIKGDGEVLEEIVTKERHREINK 323
           LIKGDGEVLEEIVTKERHREINK
Sbjct: 301 LIKGDGEVLEEIVTKERHREINK 323


>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
          Length = 717

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 3/108 (2%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           ++ RSRSR R+R + S+ R + S   +S + S S+S   S       +RSSSSSSSS+S 
Sbjct: 556 TKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSG 615

Query: 189 SSSSSSSSSSSSSSDGRKK---RGKYKDKRRKKKKKRKKLKKKGKEKA 233
           SSS  SSSS+SSSS+ R +   RG  +D++ ++   RK+    G E++
Sbjct: 616 SSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERS 663



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 62  SAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRAR 121
           S   GRAR+ T   R++ S ++  S  ++ ++    +SS       +    S   G  +R
Sbjct: 560 SRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSR 619

Query: 122 GAMAHVGSRKRSRSRSRSRGRGSEKRKKKS----RKDTSRNCSASTSQERSKQKARRRTR 177
            + +   S   SRSRSR RG   +++ ++S    R+DTS       S + SK  + R T+
Sbjct: 620 DSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTS---GLERSHKSSKGGSSRDTK 676

Query: 178 SSSSSSSSS--SSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 216
            S   +S S    S S SS S   SS   R ++   KDKRR
Sbjct: 677 GSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSDRKDKRR 717



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 51/176 (28%), Positives = 70/176 (39%), Gaps = 29/176 (16%)

Query: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS 185
           H  S+ ++++RSRSRGR   K                TS+ RS+           SSSSS
Sbjct: 549 HPESKSKTKTRSRSRGRARNK----------------TSKSRSR-----------SSSSS 581

Query: 186 SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPS 245
           SSSSSS+SSSS SSSSS     R              +         +E++      G +
Sbjct: 582 SSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHN 641

Query: 246 LDQWHRSAGEEE--DGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
            D+ HR + + +  D   L    KS        TK   D      RK    E+ R+
Sbjct: 642 RDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRS 697



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 86  SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRS-RSRSRSRGRGS 144
           +R  SR   R + S       K+R   S      +    +  GS   S  S SRS    S
Sbjct: 558 TRSRSRGRARNKTS-------KSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSS 610

Query: 145 EKRKKKSRKDTSRNCSAST-----SQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 199
                 S +D+S + S+S+     S+ R   + R+  RS       +S    S  SS   
Sbjct: 611 SSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGG 670

Query: 200 SSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 237
           SS D   K  K K+ R  +K+   +  + GK  + +++
Sbjct: 671 SSRD--TKGSKDKNSRSDRKRSISESSRSGKRSSRSER 706



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 17/186 (9%)

Query: 104 PLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSAST 163
           P++     LSGP GGR RG++         R  S S G    K+         R+   + 
Sbjct: 39  PIQARLLALSGPGGGRGRGSLL------LRRGFSDSGGGPPAKQ---------RDLEGAV 83

Query: 164 SQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRK 223
           S+   +++ RR +R  S          +  SS  ++S    R +R   +D+   +K K++
Sbjct: 84  SRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATSKE--RTRRDLIQDQNMDEKGKQR 141

Query: 224 KLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDA 283
             +  G      Q+ +     + ++  R    E+   V  +E++ +++  +    EE  A
Sbjct: 142 NRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQVENERRELFEERRA 201

Query: 284 RQSIIR 289
           +Q+ +R
Sbjct: 202 KQTELR 207



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 163 TSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 209
           T    SK K + R+RS   + + +S S S SSSSSSSSSS      G
Sbjct: 547 TVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSG 593



 Score = 30.4 bits (67), Expect = 2.4
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 203 DGRKKRGKYKDKRRK--KKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGP 260
           + R +R   K+K  +  + +++K  +++GK     +++E       D     AGEEE+  
Sbjct: 282 EARPRRQSMKEKEHQVVRNEEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKE 341

Query: 261 VL--------TDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPE 295
           +           E++ + Q M+   +EE + R+S  ++   PE
Sbjct: 342 IAIVHSDAEKEQEEEEQKQEMEVKMEEETEVRESEKQQDSQPE 384


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 75.9 bits (185), Expect = 5e-14
 Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 24/189 (12%)

Query: 56  PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGP 115
           PAP  A+A G   R  +   R +   A   +  +S   P P A + P   +K R      
Sbjct: 503 PAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSR---- 558

Query: 116 QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRR 175
              R  G+ A   +R+RSRSRSRSR      R    R+  SR       + RS++K RRR
Sbjct: 559 --DRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSR-------RSRSREKRRRR 609

Query: 176 TRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 235
            RS+S   ++SSSSSS              + RGK++D    KKKK++   +  K   + 
Sbjct: 610 RRSASPPPATSSSSSSRRE-----------RHRGKHRDGGGSKKKKKRSRSRGEKRSGDG 658

Query: 236 QQVEALPGP 244
            +    P P
Sbjct: 659 SEKAPAPAP 667



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 93  APRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRS---RSRSRSRGRGSEKRKK 149
           +P P ASSP   +     GLSG +    RG  +    R+RS    S S SR +GS +RK 
Sbjct: 719 SPAP-ASSPKREVLYDSEGLSGEE----RGGKSSQKDRRRSGAASSSSSSREKGS-RRKA 772

Query: 150 KSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207
               D  R+      ++RS +KAR    S+ SS        SS S SSSSSSS   +K
Sbjct: 773 LDGGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRK 830



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 106 EKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ 165
           E+ R     P    A  A A   +RK+SR   +  G   E     S    +    AS   
Sbjct: 492 ERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWD 551

Query: 166 ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 225
            +  +   R+  S +SSS+   S S S S S+   S    ++RG  +  R ++K++R+  
Sbjct: 552 SKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRR-- 609

Query: 226 KKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDG 259
                 +  A    A    S  +  R  G+  DG
Sbjct: 610 ------RRSASPPPATSSSSSSRRERHRGKHRDG 637



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 48/182 (26%), Positives = 66/182 (36%), Gaps = 15/182 (8%)

Query: 56  PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSP--PLPLEKARGGLS 113
           P P  +S+   R        R  G       R  SR   R    S   P P     G  S
Sbjct: 615 PPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGSTS 674

Query: 114 -GPQGGRARGAMA---------HVGSRKRSRSRSR---SRGRGSEKRKKKSRKDTSRNCS 160
            G +  R RGA+           + + KR+ +  R   S  RG       S K      S
Sbjct: 675 CGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKSDPRGPSPAPASSPKREVLYDS 734

Query: 161 ASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKK 220
              S E    K+ ++ R  S ++SSSSSS    S   +    D  + R + +D+ R  KK
Sbjct: 735 EGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKALDGGDRDRDRDRDRDRDRSSKK 794

Query: 221 KR 222
            R
Sbjct: 795 AR 796



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 68/286 (23%), Positives = 106/286 (37%), Gaps = 39/286 (13%)

Query: 21  RAPGAWVLRACA---ERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRT 77
           RA GA   R      E  A   G  S +    G GA  P PLL   G     +G      
Sbjct: 343 RADGAMRRRVFVVGTEAEACREGKVSVEVVTAG-GAALPPPLLPP-GDSEIEEGEIVQPE 400

Query: 78  KGSGAALPS-RPASRAA-PRPEASSPPL-------PLEKARGG---LSGPQGGRARGAM- 124
           +    AL   RP  RAA P P AS+ P        P  +A  G   LS        GA+ 
Sbjct: 401 EEPRLALSLFRPGGRAARPTPAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQ 460

Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKK--KSRKDTSRNCS----------ASTSQERSKQKA 172
             +G    +   + SR  G + R+K    R++  R  S          A+      K+  
Sbjct: 461 VDLGEPAPAPPAADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSR 520

Query: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKD---------KRRKKKKKRK 223
           R R RS  +  ++SSSS +  +  + +S  D +K R + +          +RR + + R 
Sbjct: 521 RERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRS 580

Query: 224 KLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSR 269
           +  ++     + ++  +    S ++  R        P  +    SR
Sbjct: 581 RSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSR 626



 Score = 35.0 bits (79), Expect = 0.097
 Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 24/233 (10%)

Query: 50   GCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSR--PASRAAPRPEASSPPLPLEK 107
            G  +  PA   ASAG G         R   S    P    P   A   P ++ P     K
Sbjct: 844  GVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKKTKVK 903

Query: 108  ARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQER 167
            A+ G    +G   +G      +RK+ RS   S G G +   KKS+ D+    + +   E 
Sbjct: 904  AKAGAKKTKG--TKGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKADSCSQAAGTKGAEE 961

Query: 168  SKQKARRRTRSSSS----------------SSSSSSSSSSSSSSSSSSSSSDGRKKRGKY 211
            +      R     S                S +  SS  +   S     +++    RG  
Sbjct: 962  TSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGA 1021

Query: 212  KDKRRKKKKKRKKLKKKGKEKA--EAQQVEALPGPSLDQWHRSAGEE--EDGP 260
            +++  +++++ ++ +++ ++ A   A    A    +      +AG+   EDGP
Sbjct: 1022 EEEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGP 1074


>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
          Length = 484

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 18/234 (7%)

Query: 88  PASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKR 147
           P+S    R  + S      K+R         R R      G R RS S++R + +  +K 
Sbjct: 261 PSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKK-EDKE 319

Query: 148 KKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207
           KK+S+       +A  S+  S+++ RRR+RS + S     S     S S S       KK
Sbjct: 320 KKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKK 379

Query: 208 RGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQK 267
           + K K++ R ++++    KKK K+K + ++ ++     + Q  R   EEE G    D +K
Sbjct: 380 KDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQG---YDSEK 436

Query: 268 SRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEI-VTKERHRE 320
            + +  KP+             +   P+T    + KG G+ L E  V  + H E
Sbjct: 437 EKKEEKKPI-------------ETGSPKTKECSVEKGTGDSLRESKVNGDDHHE 477



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 131 KRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSS 190
           KR R          E  KK+ ++  SR+ S S  +        RR+RS S   S S S S
Sbjct: 224 KRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRS 283

Query: 191 SSSSSS----SSSSSSDGRKKRGKYKDKRRKKKKKRKKLKK 227
              S S     S S   GR+ R   K + +KK+ K KK  K
Sbjct: 284 RRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSK 324



 Score = 35.0 bits (79), Expect = 0.097
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 11/132 (8%)

Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSA--STSQERSKQKARRRTRSSSSSSSSSSSSSSSS 193
           +S +  +  E+  K+ R+  S   +A     +E  ++ +R R+RS    + SSS    S 
Sbjct: 211 KSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSR 270

Query: 194 SSSSSSSSSDGRKKRGKYKDKRRKK------KKKRKKLKKKGKEKAEAQQVEALPGP--- 244
           S S   S S  R +R     +RR+       ++ R   K + K+K + ++  +   P   
Sbjct: 271 SRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSY 330

Query: 245 SLDQWHRSAGEE 256
           S  +  RSA  E
Sbjct: 331 STARRSRSASRE 342


>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
          Length = 754

 Score = 72.0 bits (175), Expect = 7e-13
 Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 11/96 (11%)

Query: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG-----------RK 206
           +C     + + K++ ++R +SSSSSSSSSS S SSS S SSS SSD            +K
Sbjct: 173 SCGELIPKSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKK 232

Query: 207 KRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALP 242
           K  K   K +K+KKKRKK KK    ++EA+ +EA P
Sbjct: 233 KHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQP 268



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 18/156 (11%)

Query: 130 RKRSRSRSRSR----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKAR-RRTRSSSSSSS 184
           R+R RSRSR R    GR   K +++ R+D SR+     SQ R+K K R + ++SS    +
Sbjct: 599 RRRGRSRSRERRTPPGRSRSKDRRRRRRD-SRSSEREESQSRNKDKYRNQESKSSHRKEN 657

Query: 185 SSSSSSSSSSSSSSSSSSDGRKKR--------GKYKDKRRKKKKKRKKLKKKGKEKAEA- 235
           S S     S S   +SS++ R+K+         K K   +  + K   LK K  EK  + 
Sbjct: 658 SESEKRMYSKSRDHNSSNNSREKKADRDQSPFSKIKQSSQDNELKSSMLKNKEDEKIRSS 717

Query: 236 --QQVEALPGPSLDQWH-RSAGEEEDGPVLTDEQKS 268
             ++ +   G   D  H ++   + +    TDE KS
Sbjct: 718 VEKENQKSKGQENDHVHEKNKKFDHESSPGTDEDKS 753



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 33/114 (28%), Positives = 47/114 (41%)

Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
           R+R     V SR   R RSRS+     + ++  R+  SR+    T   RS+ K RRR R 
Sbjct: 567 RSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRR 626

Query: 179 SSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            S SS    S S +     +  S    +K     +KR   K +        +EK
Sbjct: 627 DSRSSEREESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSRDHNSSNNSREK 680



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 43/216 (19%), Positives = 83/216 (38%), Gaps = 10/216 (4%)

Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQE 166
           K+R         + R +  +    KR RSRS+ R   + K K+K      ++   S S+E
Sbjct: 459 KSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQERSRSKE 518

Query: 167 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 226
           +SKQ       S S+    S S      + S S   D  K +  Y  + R++ + R + +
Sbjct: 519 KSKQ-----LESKSNEHDHSKSKEKDRRAQSRSRECDITKGKHSYNSRTRERSRSRDRSR 573

Query: 227 K-----KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 281
           +       ++++ +++          +  RS   E   P      K R +  +     E 
Sbjct: 574 RVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRRDSRSSER 633

Query: 282 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKER 317
           +  QS  +     +  ++   K + E  + + +K R
Sbjct: 634 EESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSR 669



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 21/190 (11%)

Query: 76  RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
           R++     + SR   R   R +        E  R G S  +  R     +    R+R R 
Sbjct: 567 RSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRR 626

Query: 136 RSRSRGRGSEKRKKKSR-KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS----- 189
            SRS    SE+ + +SR KD  RN  + +S  +   ++ +R  S S   +SS++S     
Sbjct: 627 DSRS----SEREESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSRDHNSSNNSREKKA 682

Query: 190 --SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKK---KRKKLKKKGKEKAEAQQV------ 238
               S  S    SS D   K    K+K  +K +   +++  K KG+E     +       
Sbjct: 683 DRDQSPFSKIKQSSQDNELKSSMLKNKEDEKIRSSVEKENQKSKGQENDHVHEKNKKFDH 742

Query: 239 EALPGPSLDQ 248
           E+ PG   D+
Sbjct: 743 ESSPGTDEDK 752



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKAR-------RRTRSSSSS 182
           + + + R++S+ R   K K KS++  S++      + RS+ K R       +  +S S  
Sbjct: 449 KNKVKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKG 508

Query: 183 SSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKK 227
                S S   S    S S++    + K KD+R + + +   + K
Sbjct: 509 KDQERSRSKEKSKQLESKSNEHDHSKSKEKDRRAQSRSRECDITK 553



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSS 191
           +S S+ R   R SEK  K   K   R  + S S+ +SK+K++ + R S  + +      S
Sbjct: 430 KSNSKERDIRRNSEKDDKYKNKVKKR--AKSKSRSKSKEKSKSKERDSKHNRNEEKRMRS 487

Query: 192 SSSSSSSSSSSDGRKK---RGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 239
            S      +  +  K+   +GK +++ R K+K  K+L+ K  E   ++  E
Sbjct: 488 RSKGRDHENVKEKEKQSDSKGKDQERSRSKEKS-KQLESKSNEHDHSKSKE 537



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 134 RSRSRSRGRGSEKRKK-KSRKDTSRNCSASTSQERS---KQKARRRTRSSS-SSSSSSSS 188
           R+ S S  R +EK KK K  K  S+      + E+    K K ++R +S S S S   S 
Sbjct: 410 RNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKSKSRSKSKEKSK 469

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 248
           S    S  + +     R +      +  K+K+K+   K K +E++ +++         ++
Sbjct: 470 SKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQERSRSKEKSKQLESKSNE 529

Query: 249 WHRSAGEEED 258
              S  +E+D
Sbjct: 530 HDHSKSKEKD 539



 Score = 38.5 bits (88), Expect = 0.009
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 23/161 (14%)

Query: 130 RKRSRSRSRSRGRGSE---------KRKKKSRKDTSRNCSASTSQERSKQKARRRT---- 176
           R  SRSRSR R R SE         +R ++ R  +          E ++ K  +R+    
Sbjct: 342 RTPSRSRSRDRFRRSETPPHWRQEMQRAQRMRVSSGERWIKGDKSELNEIKENQRSPVRV 401

Query: 177 --------RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKK- 227
                   R+ S S +  +          S+S     ++  +  DK + K KKR K K  
Sbjct: 402 KERKITDHRNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKSKSR 461

Query: 228 -KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQK 267
            K KEK+++++ ++    + ++  RS  +  D   + +++K
Sbjct: 462 SKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEK 502



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 43/249 (17%), Positives = 82/249 (32%), Gaps = 27/249 (10%)

Query: 75  VRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSR 134
           VR    G  +P     +   +   SS       +    S      +  + +   + ++S+
Sbjct: 169 VRILSCGELIPKSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSK 228

Query: 135 SRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSS 194
            R +   + S K KK+ +K      SAS+  E    +A+ ++            +     
Sbjct: 229 KRKKKHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPPIPENRFLMR 288

Query: 195 SSSSSSSSDGRKKRGKYKDKR------RKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 248
            S   +    RK R + +++       +    +R+ L  +   K + +       PS  +
Sbjct: 289 KSPPKADEKERKNRERERERECNPPNSQPASYQRRLLVTRSGRKIKGRGPRRYRTPSRSR 348

Query: 249 WHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEV 308
             R      + P    ++  R Q M+  + E W                    IKGD   
Sbjct: 349 -SRDRFRRSETPPHWRQEMQRAQRMRVSSGERW--------------------IKGDKSE 387

Query: 309 LEEIVTKER 317
           L EI   +R
Sbjct: 388 LNEIKENQR 396


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 41/105 (39%), Positives = 58/105 (55%)

Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           G+ K S  + R R +  ++R   S   ++R+ S+STS   S       + SSSSS+SS S
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            SSS+S SSSSSSSS       +  D RR+ + K K  K+  KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S ++S+ RS+ +G   E  +K   +D +R   +++S   S +     T SS SS+S+ SS
Sbjct: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S SSSSS+SS S S    +              +RR   ++R + K K  ++ E ++   
Sbjct: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154

Query: 241 LPGPSLDQWH 250
            P P   + H
Sbjct: 155 SPSPKPTKVH 164



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 74  GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
           GV+ K   G    ++ +S  AP P          K R         + +GA      + R
Sbjct: 5   GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57

Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
            R ++R R     G  S + +  S   +  + S  +S   S   A  R+ SSS+S SSSS
Sbjct: 58  GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
           SSSS S S S     + R+ R K K  +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 67  RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
           R RD T   R+  SG+   S   SR++    + S                G  +  A + 
Sbjct: 57  RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105

Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
            GS   SRS S S   GS    ++   +  R+ S S   +R +++ +RR+ S
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           AS+G    R  +    + GS  +  S   S ++    ASS       +R   S    G  
Sbjct: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
             +     +R+RSRS+S+   R  ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 41/105 (39%), Positives = 58/105 (55%)

Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           G+ K S  + R R +  ++R   S   ++R+ S+STS   S       + SSSSS+SS S
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            SSS+S SSSSSSSS       +  D RR+ + K K  K+  KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S ++S+ RS+ +G   E  +K   +D +R   +++S   S +     T SS SS+S+ SS
Sbjct: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S SSSSS+SS S S    +              +RR   ++R + K K  ++ E ++   
Sbjct: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154

Query: 241 LPGPSLDQWH 250
            P P   + H
Sbjct: 155 SPSPKPTKVH 164



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 74  GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
           GV+ K   G    ++ +S  AP P          K R         + +GA      + R
Sbjct: 5   GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57

Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
            R ++R R     G  S + +  S   +  + S  +S   S   A  R+ SSS+S SSSS
Sbjct: 58  GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
           SSSS S S S     + R+ R K K  +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 67  RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
           R RD T   R+  SG+   S   SR++    + S                G  +  A + 
Sbjct: 57  RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105

Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
            GS   SRS S S   GS    ++   +  R+ S S   +R +++ +RR+ S
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           AS+G    R  +    + GS  +  S   S ++    ASS       +R   S    G  
Sbjct: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
             +     +R+RSRS+S+   R  ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 41/105 (39%), Positives = 58/105 (55%)

Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           G+ K S  + R R +  ++R   S   ++R+ S+STS   S       + SSSSS+SS S
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            SSS+S SSSSSSSS       +  D RR+ + K K  K+  KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S ++S+ RS+ +G   E  +K   +D +R   +++S   S +     T SS SS+S+ SS
Sbjct: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S SSSSS+SS S S    +              +RR   ++R + K K  ++ E ++   
Sbjct: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154

Query: 241 LPGPSLDQWH 250
            P P   + H
Sbjct: 155 SPSPKPTKVH 164



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 74  GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
           GV+ K   G    ++ +S  AP P          K R         + +GA      + R
Sbjct: 5   GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57

Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
            R ++R R     G  S + +  S   +  + S  +S   S   A  R+ SSS+S SSSS
Sbjct: 58  GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
           SSSS S S S     + R+ R K K  +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 67  RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
           R RD T   R+  SG+   S   SR++    + S                G  +  A + 
Sbjct: 57  RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105

Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
            GS   SRS S S   GS    ++   +  R+ S S   +R +++ +RR+ S
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           AS+G    R  +    + GS  +  S   S ++    ASS       +R   S    G  
Sbjct: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
             +     +R+RSRS+S+   R  ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 41/105 (39%), Positives = 58/105 (55%)

Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           G+ K S  + R R +  ++R   S   ++R+ S+STS   S       + SSSSS+SS S
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            SSS+S SSSSSSSS       +  D RR+ + K K  K+  KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S ++S+ RS+ +G   E  +K   +D +R   +++S   S +     T SS SS+S+ SS
Sbjct: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S SSSSS+SS S S    +              +RR   ++R + K K  ++ E ++   
Sbjct: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154

Query: 241 LPGPSLDQWH 250
            P P   + H
Sbjct: 155 SPSPKPTKVH 164



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 74  GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
           GV+ K   G    ++ +S  AP P          K R         + +GA      + R
Sbjct: 5   GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57

Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
            R ++R R     G  S + +  S   +  + S  +S   S   A  R+ SSS+S SSSS
Sbjct: 58  GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
           SSSS S S S     + R+ R K K  +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 67  RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
           R RD T   R+  SG+   S   SR++    + S                G  +  A + 
Sbjct: 57  RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105

Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
            GS   SRS S S   GS    ++   +  R+ S S   +R +++ +RR+ S
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           AS+G    R  +    + GS  +  S   S ++    ASS       +R   S    G  
Sbjct: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
             +     +R+RSRS+S+   R  ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155


>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 40/105 (38%), Positives = 57/105 (54%)

Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           G+ K S  + R R +  ++    S   ++R+ S+STS   S       + SSSSS+SS S
Sbjct: 47  GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            SSS+S SSSSSSSS       +  D RR+ + K K  K+  KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S ++S+ RS+ +G   E  +K   +D +R   +++S   S +     T SS SS+S+ SS
Sbjct: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S SSSSS+SS S S    +              +RR   ++R + K K  ++ E ++   
Sbjct: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154

Query: 241 LPGPSLDQWH 250
            P P   + H
Sbjct: 155 SPSPKPTKVH 164



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 74  GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
           GV+ K   G    ++ +S  AP P          K R         + +GA      + R
Sbjct: 5   GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57

Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
            R ++R R     G  S + +  S   +  + S  +S   S   A  R+ SSS+S SSSS
Sbjct: 58  GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
           SSSS S S S     + R+ R K K  +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           AS+G    R  +    + GS  +  S   S ++    ASS       +R   S    G  
Sbjct: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
             +     +R+RSRS+S+   R  ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 40/105 (38%), Positives = 57/105 (54%)

Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           G+ K S  + R R +  ++    S   ++R+ S+STS   S       + SSSSS+SS S
Sbjct: 47  GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            SSS+S SSSSSSSS       +  D RR+ + K K  K+  KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S ++S+ RS+ +G   E  +K   +D +R   +++S   S +     T SS SS+S+ SS
Sbjct: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S SSSSS+SS S S    +              +RR   ++R + K K  ++ E ++   
Sbjct: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154

Query: 241 LPGPSLDQWH 250
            P P   + H
Sbjct: 155 SPSPKPTKVH 164



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 74  GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
           GV+ K   G    ++ +S  AP P          K R         + +GA      + R
Sbjct: 5   GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57

Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
            R ++R R     G  S + +  S   +  + S  +S   S   A  R+ SSS+S SSSS
Sbjct: 58  GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
           SSSS S S S     + R+ R K K  +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           AS+G    R  +    + GS  +  S   S ++    ASS       +R   S    G  
Sbjct: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
             +     +R+RSRS+S+   R  ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 40/105 (38%), Positives = 57/105 (54%)

Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           G+ K S  + R R +  ++    S   ++R+ S+STS   S       + SSSSS+SS S
Sbjct: 47  GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            SSS+S SSSSSSSS       +  D RR+ + K K  K+  KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S ++S+ RS+ +G   E  +K   +D +R   +++S   S +     T SS SS+S+ SS
Sbjct: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S SSSSS+SS S S    +              +RR   ++R + K K  ++ E ++   
Sbjct: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154

Query: 241 LPGPSLDQWH 250
            P P   + H
Sbjct: 155 SPSPKPTKVH 164



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 74  GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
           GV+ K   G    ++ +S  AP P          K R         + +GA      + R
Sbjct: 5   GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57

Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
            R ++R R     G  S + +  S   +  + S  +S   S   A  R+ SSS+S SSSS
Sbjct: 58  GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
           SSSS S S S     + R+ R K K  +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           AS+G    R  +    + GS  +  S   S ++    ASS       +R   S    G  
Sbjct: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
             +     +R+RSRS+S+   R  ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 40/105 (38%), Positives = 57/105 (54%)

Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           G+ K S  + R R +  ++    S   ++R+ S+STS   S       + SSSSS+SS S
Sbjct: 47  GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            SSS+S SSSSSSSS       +  D RR+ + K K  K+  KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S ++S+ RS+ +G   E  +K   +D +R   +++S   S +     T SS SS+S+ SS
Sbjct: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S SSSSS+SS S S    +              +RR   ++R + K K  ++ E ++   
Sbjct: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154

Query: 241 LPGPSLDQWH 250
            P P   + H
Sbjct: 155 SPSPKPTKVH 164



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 74  GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
           GV+ K   G    ++ +S  AP P          K R         + +GA      + R
Sbjct: 5   GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57

Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
            R ++R R     G  S + +  S   +  + S  +S   S   A  R+ SSS+S SSSS
Sbjct: 58  GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
           SSSS S S S     + R+ R K K  +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154



 Score = 32.7 bits (73), Expect = 0.48
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 61  ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
           AS+G    R  +    + GS  +  S   S ++    ASS       +R   S    G  
Sbjct: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124

Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
             +     +R+RSRS+S+   R  ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155


>gi|40807452 peroxisome proliferator-activated receptor gamma,
            coactivator-related 1 [Homo sapiens]
          Length = 1664

 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 18/175 (10%)

Query: 80   SGAALPSRP--ASRAAPRPEAS---------SPPLPLEKARGGLSGPQGGRARGAMAHVG 128
            S  A PS P  A  +   PEAS         +PP P  K R      +  R+    +   
Sbjct: 1360 SEQADPSAPCLAPSSLLSPEASPCRNDMNTRTPPEPSAKQRSMRCYRKACRSASPSSQGW 1419

Query: 129  SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS--- 185
              +R R+ SRS   GS +  + S   +S + S+S S+ RS     +R R SS SSS    
Sbjct: 1420 QGRRGRN-SRSVSSGSNRTSEASSSSSSSS-SSSRSRSRSLSPPHKRWRRSSCSSSGRSR 1477

Query: 186  --SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQV 238
              SSSSSSSSSSSSSSSSS   + R +    RR+  ++R+    +  +  + Q+V
Sbjct: 1478 RCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQRQRV 1532



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 90   SRAAPRPEASSPPL-----PLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGS 144
            +R  P P A    +         A     G QG R R + +      R+   S S    S
Sbjct: 1389 TRTPPEPSAKQRSMRCYRKACRSASPSSQGWQGRRGRNSRSVSSGSNRTSEASSSSSSSS 1448

Query: 145  EKRKKKSRKDTSRNCSASTSQERSKQKARR-RTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203
               + +SR  +  +     S   S  ++RR  + SSSSSSSSSSSSSSSSS S S S S 
Sbjct: 1449 SSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSP 1508

Query: 204  GRK--KRGKYKDKRRKKKKKRKKL--KKKGKEKAEAQQVEALPG 243
             R+  +R +Y   R     +R+++  K++  E+     +  +PG
Sbjct: 1509 RRRSDRRRRYSSYRSHDHYQRQRVLQKERAIEERRVVFIGKIPG 1552



 Score = 28.5 bits (62), Expect = 9.1
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 150 KSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 209
           K  ++   N +  + + R  +K + + + ++     +    SSS   S+  +    +   
Sbjct: 440 KEPQNPPANAAPGSQRARKGRKKKSKEQPAACVEGYARRLRSSSRGQSTVGTEVTSQVDN 499

Query: 210 KYKDKRRKKKKKRKKLKKKGKEKAEAQQ-VEALPGPSLDQWHRSAGEE---EDGPV 261
             K  + + +K+   L+ KGK +A A+    AL   S     RSAG+    ++GP+
Sbjct: 500 LQKQPQEELQKESGPLQGKGKPRAWARAWAAALENSSPKNLERSAGQSSPAKEGPL 555


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 57/187 (30%), Positives = 79/187 (42%), Gaps = 26/187 (13%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNC---SASTSQERSKQKARRRTRSSSSSSSS 185
           S  RSRS SRSR R    RK +SR  +S++    S S S+  S+ +++ R+RS S S S 
Sbjct: 184 SYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSK 243

Query: 186 SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK---------KKKKRKKLKKKGKEKAEAQ 236
              S S S   S S S    K R K KD+  +         K K R   + K K K+ ++
Sbjct: 244 KEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSR 303

Query: 237 QVEALPGPSLDQWHRSAGEEEDGPV---LTDEQKSRIQAMKPMTKEEWDARQSIIRKVVD 293
             E           R   EE+ G V    + E+  R    +  +K    +R     K  D
Sbjct: 304 SQE-----------RRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKD 352

Query: 294 PETGRTR 300
              GR R
Sbjct: 353 KRKGRKR 359



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 1/188 (0%)

Query: 120 ARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
           +R + +  GS K S S+SRSR R   + + KSR  +     +   + RS  K + R+RS 
Sbjct: 201 SRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSH 260

Query: 180 SSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 239
           S+  S S S   +     ++ +    K R   + K + K + R + ++  +EK  +    
Sbjct: 261 SAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRG 320

Query: 240 ALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
                SL Q  RS    + G       +S+ +  +   K   +  +S  R     E  R 
Sbjct: 321 RSQEKSLRQ-SRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRK 379

Query: 300 RLIKGDGE 307
           R  K D +
Sbjct: 380 RGSKRDSK 387



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 5/165 (3%)

Query: 86  SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSE 145
           SR  S+   R  + S     +K +G     +  R+R        R R R   R    GS 
Sbjct: 332 SRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSS 391

Query: 146 KRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 205
           K+KKK  +DT R+ S S S+  SK++   ++ SS       S ++ ++  + S S S+ +
Sbjct: 392 KKKKK--EDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSK 449

Query: 206 KKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 250
            K     + R + K      K + + K+ ++     P  S  + H
Sbjct: 450 SKPNLPSESRSRSKSAS---KTRSRSKSRSRSASRSPSRSRSRSH 491



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 17/214 (7%)

Query: 95  RPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKD 154
           +P++ SP     K++   S  +    R      GS  R RS+ +S     + R +   K 
Sbjct: 285 KPKSRSPSRHKSKSK---SRSRSQERRVEEEKRGSVSRGRSQEKSL---RQSRSRSRSKG 338

Query: 155 TSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSS---SSSSSSSSSDGRKKRGKY 211
            SR+ S S S+ + K+K R+R+R  S S S S S S  S    S   S +   +KK+ + 
Sbjct: 339 GSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKED 398

Query: 212 KDKRRKKKKKRKKLKKKGKEKAEAQQVEAL-----PGPSLDQWHRSAGEEEDGPVLTDEQ 266
            D+ + +   R   K++   K+E+ Q E        G + +   RS    +  P L  E 
Sbjct: 399 TDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSES 458

Query: 267 KSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
           +SR ++            +S  R    P   R+R
Sbjct: 459 RSRSKSASKTRSRSKSRSRSASR---SPSRSRSR 489



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 57/233 (24%), Positives = 89/233 (38%), Gaps = 52/233 (22%)

Query: 90  SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKK 149
           SR+  R  + S      ++R G S     ++R       SR RS SRSRS+ R   + + 
Sbjct: 188 SRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSR-------SRSRSGSRSRSKSRSRSQSRS 240

Query: 150 KSRKDTSRNCSASTSQERS-------------------------KQKARRRTRSSSSSSS 184
           +S+K+ SR+ S   S+ RS                         K K+R  +R  S S S
Sbjct: 241 RSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKS 300

Query: 185 SSSSSSSSSSSSSSSSSSDGR-----------KKRGKYKDKRRKKKKKRKKLKKKGKEKA 233
            S S           S S GR           + R K   + R + + + K K+KG++++
Sbjct: 301 RSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRS 360

Query: 234 EAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQS 286
             +        S  +  R  G + D         S+  + K   KE+ D  QS
Sbjct: 361 REESRSRSRSRSKSERSRKRGSKRD---------SKAGSSKKKKKEDTDRSQS 404



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 145 EKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG 204
           +K   + R+  SR+ S S S+ RS+   + R+RS SS SS S S S S S S S S S  
Sbjct: 175 DKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRS 234

Query: 205 R----------KKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
           R          K R   K+K R +     K + K K++AE
Sbjct: 235 RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAE 274



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 143 GSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSS--SSSSSSSSSSSSSSSSSS 200
           GS +R+  SR   SR+ S S S+ R  +K+R R+ SS SS   S S S S S S S S S
Sbjct: 178 GSRRRRSYSR---SRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRS 234

Query: 201 SSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236
            S  R +  K K +   K+K R +    GK +++++
Sbjct: 235 RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSK 270



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 62  SAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRAR 121
           S GG R+R  +             SR  SR+  R  + S      + RG     + G ++
Sbjct: 336 SKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSER---SRKRGSKRDSKAGSSK 392

Query: 122 GAMAHVGSRKRSRSRSRSRGRGSEKRKKKS--RKDTSRNCSASTSQERSKQKARRRTRSS 179
                   R +SRS SRS  +  E  K +S  R+    + +A T+QE    ++R R+ S 
Sbjct: 393 KKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQE---TRSRSRSNSK 449

Query: 180 SSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKK 219
           S  +  S S S S S+S + S S  R +       R + +
Sbjct: 450 SKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 67  RARDGTWGVRTKGSGAALPSRPASRA------APRPEASSPPLPLEKARGGLSGPQGGR- 119
           R+R  +   R++  G+   S+  S          R ++ SP   + K R         R 
Sbjct: 367 RSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQRE 426

Query: 120 ARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
            RG   + G+ + +RSRSRS  +       +SR              RSK  ++ R+RS 
Sbjct: 427 GRGESENAGTNQETRSRSRSNSKSKPNLPSESRS-------------RSKSASKTRSRSK 473

Query: 180 SSSSSSSSSSSSSSSSSSSSS 200
           S S S+S S S S S S S S
Sbjct: 474 SRSRSASRSPSRSRSRSHSRS 494


>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
           [Homo sapiens]
          Length = 624

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 13/208 (6%)

Query: 130 RKRSRSRS--RSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS-SSSSSSSS 186
           RK  RSRS  RS+ R S K   + ++  S++ S S ++ RS+QK RRR++S     S S 
Sbjct: 303 RKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR 362

Query: 187 SSSSSSSSSSSSSSSSDGRKK-------RGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 239
               S S S S     D R+K       + K ++K R+++K+R+K K++GK K   ++ E
Sbjct: 363 ERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKERE 422

Query: 240 ALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
                  ++      E+E      D  K + +      + E D  + I  K    +  RT
Sbjct: 423 KDREKDKEKDREREREKEHE---KDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRT 479

Query: 300 RLIKGDGEVLEEIVTKERHREINKQATR 327
                +        ++ER R  ++ ++R
Sbjct: 480 PPRSYNASRRSRSSSRERRRRRSRSSSR 507



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSS 191
           + + R + R +  ++++KK +K  +   S + S+        RR R S SSS S  +S +
Sbjct: 455 KEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKT 514

Query: 192 SSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK-----------GKEKAEAQQVEA 240
               SS S S   R K+ K ++K R    +R++ ++            GKEK E      
Sbjct: 515 IKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSL 574

Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQ 271
                  +   S  +E D       ++++IQ
Sbjct: 575 KEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 605



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 44/258 (17%), Positives = 93/258 (36%), Gaps = 15/258 (5%)

Query: 86  SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSE 145
           +R  SR   R  + SP     K+R          +R        + + + R + + R  E
Sbjct: 339 NRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKE 398

Query: 146 KRKKKSR---KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 202
           + ++K R   K+  +N      +E+ ++K + + R                         
Sbjct: 399 REREKEREKEKERGKNKDRDKEREKDREKDKEKDR-EREREKEHEKDRDKEKEKEQDKEK 457

Query: 203 DGRKKRGKYKDKRRKKKKK----------RKKLKKKGKEKAEAQQVEALPGPSLDQWHRS 252
           +  K R K  D++RKK KK           ++ +   +E+   +   +   P   +  + 
Sbjct: 458 EREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKR 517

Query: 253 AGEEEDGPVLTDEQ-KSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEE 311
                  P   +++ K R +    +++     R + +RK  +   G+ +L K    + E+
Sbjct: 518 KSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEK 577

Query: 312 IVTKERHREINKQATRGD 329
              KE    ++K+    D
Sbjct: 578 EHNKEPDSSVSKEVDDKD 595



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 6/184 (3%)

Query: 146 KRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 205
           KR ++++   S      + +   ++  R R+ + S S SSS S S    S S   S    
Sbjct: 280 KRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHN 339

Query: 206 KKRGKYKDKRRKKK--KKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLT 263
           + R + KD+RR K   KKR K +++ K ++ +   +           +   +E+D     
Sbjct: 340 RSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKER 399

Query: 264 DEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 323
           + +K R +  +    ++ D  +   R+  D E  R R  + + E   +   KE+ +E +K
Sbjct: 400 EREKEREKEKERGKNKDRDKEREKDRE-KDKEKDREREREKEHEKDRD---KEKEKEQDK 455

Query: 324 QATR 327
           +  R
Sbjct: 456 EKER 459



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 23/179 (12%)

Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
           R+R +   + R +  EK + K  K+  ++ S    ++R K K  R    S ++S  S SS
Sbjct: 435 REREKEHEKDRDKEKEKEQDK-EKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSS 493

Query: 190 S---------SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S         SSS S  +S +   +  R      R KK KKR+K +    E+ E ++  +
Sbjct: 494 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTS 553

Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
           +         R +  + DG    ++  + ++  K   KE      S+ ++V D +  RT
Sbjct: 554 M---------RKSSNDRDGKEKLEKNSTSLKE-KEHNKE---PDSSVSKEVDDKDAPRT 599



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 129 SRKRSRSRSRSRGRG---SEKRKKKSRKDTSRNCSASTSQERSKQK---ARRRTRSSSSS 182
           SR+R R RSRS  R    S+  K+KS +  S        ++R K++   + RR R  S+S
Sbjct: 494 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTS 553

Query: 183 SSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
              SS+          +S+S   K+  K  D    K+   K   +  + K +
Sbjct: 554 MRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 605


>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
           [Homo sapiens]
          Length = 508

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 13/208 (6%)

Query: 130 RKRSRSRS--RSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS-SSSSSSSS 186
           RK  RSRS  RS+ R S K   + ++  S++ S S ++ RS+QK RRR++S     S S 
Sbjct: 187 RKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR 246

Query: 187 SSSSSSSSSSSSSSSSDGRKK-------RGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 239
               S S S S     D R+K       + K ++K R+++K+R+K K++GK K   ++ E
Sbjct: 247 ERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKERE 306

Query: 240 ALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
                  ++      E+E      D  K + +      + E D  + I  K    +  RT
Sbjct: 307 KDREKDKEKDREREREKEHE---KDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRT 363

Query: 300 RLIKGDGEVLEEIVTKERHREINKQATR 327
                +        ++ER R  ++ ++R
Sbjct: 364 PPRSYNASRRSRSSSRERRRRRSRSSSR 391



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSS 191
           + + R + R +  ++++KK +K  +   S + S+        RR R S SSS S  +S +
Sbjct: 339 KEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKT 398

Query: 192 SSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK-----------GKEKAEAQQVEA 240
               SS S S   R K+ K ++K R    +R++ ++            GKEK E      
Sbjct: 399 IKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSL 458

Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQ 271
                  +   S  +E D       ++++IQ
Sbjct: 459 KEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 489



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 44/258 (17%), Positives = 93/258 (36%), Gaps = 15/258 (5%)

Query: 86  SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSE 145
           +R  SR   R  + SP     K+R          +R        + + + R + + R  E
Sbjct: 223 NRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKE 282

Query: 146 KRKKKSR---KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 202
           + ++K R   K+  +N      +E+ ++K + + R                         
Sbjct: 283 REREKEREKEKERGKNKDRDKEREKDREKDKEKDR-EREREKEHEKDRDKEKEKEQDKEK 341

Query: 203 DGRKKRGKYKDKRRKKKKK----------RKKLKKKGKEKAEAQQVEALPGPSLDQWHRS 252
           +  K R K  D++RKK KK           ++ +   +E+   +   +   P   +  + 
Sbjct: 342 EREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKR 401

Query: 253 AGEEEDGPVLTDEQ-KSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEE 311
                  P   +++ K R +    +++     R + +RK  +   G+ +L K    + E+
Sbjct: 402 KSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEK 461

Query: 312 IVTKERHREINKQATRGD 329
              KE    ++K+    D
Sbjct: 462 EHNKEPDSSVSKEVDDKD 479



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 6/184 (3%)

Query: 146 KRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 205
           KR ++++   S      + +   ++  R R+ + S S SSS S S    S S   S    
Sbjct: 164 KRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHN 223

Query: 206 KKRGKYKDKRRKKK--KKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLT 263
           + R + KD+RR K   KKR K +++ K ++ +   +           +   +E+D     
Sbjct: 224 RSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKER 283

Query: 264 DEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 323
           + +K R +  +    ++ D  +   R+  D E  R R  + + E   +   KE+ +E +K
Sbjct: 284 EREKEREKEKERGKNKDRDKEREKDRE-KDKEKDREREREKEHEKDRD---KEKEKEQDK 339

Query: 324 QATR 327
           +  R
Sbjct: 340 EKER 343



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 23/179 (12%)

Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
           R+R +   + R +  EK + K  K+  ++ S    ++R K K  R    S ++S  S SS
Sbjct: 319 REREKEHEKDRDKEKEKEQDK-EKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSS 377

Query: 190 S---------SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
           S         SSS S  +S +   +  R      R KK KKR+K +    E+ E ++  +
Sbjct: 378 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTS 437

Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
           +         R +  + DG    ++  + ++  K   KE      S+ ++V D +  RT
Sbjct: 438 M---------RKSSNDRDGKEKLEKNSTSLKE-KEHNKE---PDSSVSKEVDDKDAPRT 483



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 129 SRKRSRSRSRSRGRG---SEKRKKKSRKDTSRNCSASTSQERSKQK---ARRRTRSSSSS 182
           SR+R R RSRS  R    S+  K+KS +  S        ++R K++   + RR R  S+S
Sbjct: 378 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTS 437

Query: 183 SSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
              SS+          +S+S   K+  K  D    K+   K   +  + K +
Sbjct: 438 MRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 489


>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
           sapiens]
          Length = 1031

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 22/210 (10%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           SR R + RSRSR R   +R +   +D SR    S S++R + ++R R R S SSS  + S
Sbjct: 52  SRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKS 111

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 248
             + + S S   +  G   + K KDK  K+ +K K      + K E +  +      +++
Sbjct: 112 KKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKR--KERVEK 169

Query: 249 WHRSAGEEEDGPVLTD--EQKSRIQAMKPMTK---EEWDARQSIIRKVVDPETGRTRLIK 303
           W     EE+    + +  E K  I+ MK   K   E+ D  +       DP        +
Sbjct: 170 WR----EEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDED------DPAEAEKEGNE 219

Query: 304 GDGEVLEEI-----VTKERHREINKQATRG 328
            +GE L+ +       KE  ++ N ++ +G
Sbjct: 220 MEGEELDPLDAYMEEVKEEVKKFNMRSVKG 249



 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 37/111 (33%), Positives = 56/111 (50%)

Query: 118 GRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTR 177
           G  R + +    R+R RSRSR + R   + +K+ R+  SR    S  + RS+ + RRR+R
Sbjct: 35  GDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSR 94

Query: 178 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK 228
           S S    S SSS  + S  + + S    K  G    K +KK K  K+ +K+
Sbjct: 95  SRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKE 145



 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
           R RSR R R R R   + K++SR    +    S S+ER + + RRR+RS     S S S 
Sbjct: 39  RSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSR 98

Query: 190 SSSSSSSSSSSSSDGRKKRGKYKDK-----RRKKKKKRKKLKKKGKEK 232
              S SSS  + S   + R + K+K       K+KKK K  K+  KEK
Sbjct: 99  GRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKEK 146



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 117 GGRARGAMAHVGSRKRSRSRSRSRG-------RGSEKRKKKSRKDTSRNCSASTSQERSK 169
           G  +R       SR RS SRSRSR        RG ++R +   +D  R  S S  + RS+
Sbjct: 2   GRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSR 61

Query: 170 QKAR---RRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 226
            + R   RR+RS     S     S S     S S S GR+ R      + KK + R + K
Sbjct: 62  SRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSK 121

Query: 227 KKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEE 280
           +K      +++ +       D+  + AG  +    L +E + R + ++   +E+
Sbjct: 122 EKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNK-LEEEMRKRKERVEKWREEQ 174



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 13/208 (6%)

Query: 106 EKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ 165
           E++R         R R  +    SR+R RSR R R R  ++R+ +SR    R+ S+S   
Sbjct: 50  ERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGN 109

Query: 166 ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD-GRKKRGKYKDKRRKKKKK--- 221
           +  K + R R++  +    SS                D G   + K +++ RK+K++   
Sbjct: 110 KSKKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEK 169

Query: 222 -RKKLKKKGKEKAEAQQVEALPGPSLDQWH-RSAGEEEDGPVLTDEQKSRIQAMKPMTKE 279
            R++ +KK  E     + E        +W      ++ED P   +++ + ++       E
Sbjct: 170 WREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEG------E 223

Query: 280 EWDARQSIIRKVVDP-ETGRTRLIKGDG 306
           E D   + + +V +  +    R +KG G
Sbjct: 224 ELDPLDAYMEEVKEEVKKFNMRSVKGGG 251



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 24/197 (12%)

Query: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS 185
           H   R  SR RS SR R      K+S++   R       + RS+ + RRR RS S     
Sbjct: 7   HYRKRSASRGRSGSRSRSRSPSDKRSKRGDDR-------RSRSRDRDRRRERSRSRDKRR 59

Query: 186 SSSSSSSSSSSSSSSSSD--GRKKRGKYKDKRRKKKKKRKKL--------KKKGKEKAEA 235
           S S        S S   D    ++R + +D+RR + + R +         K K  E    
Sbjct: 60  SRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSR 119

Query: 236 QQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPE 295
            + +   G S  +  +   ++ED     +++K      +   +EE   R+  + K    E
Sbjct: 120 SKEKTDGGESSKEKKKDKDDKED-----EKEKDAGNFDQNKLEEEMRKRKERVEKW--RE 172

Query: 296 TGRTRLIKGDGEVLEEI 312
             R + ++  GE+ +EI
Sbjct: 173 EQRKKAMENIGELKKEI 189


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 67/215 (31%), Positives = 91/215 (42%), Gaps = 17/215 (7%)

Query: 2    ERA-GPAGEEGGAREGRLLPRA---PGAWVLRACAERAALEVGAASADTGVRGCGARGPA 57
            ERA  P+   G A    LLP A   P + V  A ++++   +   +   G +   +   A
Sbjct: 2422 ERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVA 2481

Query: 58   PLLASAGGGRARDGTWGVRTKG-SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQ 116
               +SAG     +G   V   G   + +   PAS  A +P A +   P ++ R   S   
Sbjct: 2482 TTTSSAGD---HNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSS 2538

Query: 117  GGRARGAMAHVGSRKRSRSRSRSRGRGSE---------KRKKKSRKDTSRNCSASTSQER 167
               +  + +   S   S   S S   GS          KR                  E 
Sbjct: 2539 SSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEP 2598

Query: 168  SKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 202
            +  K +RR+ SSSSSSSSSSSSSSSSSSSSSSSSS
Sbjct: 2599 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSS 2633



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 17/223 (7%)

Query: 66  GRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEK-ARGGLSGPQGGRARGAM 124
           GR+R    G R+     A   R  SR   R   S    P  + +R      +  R+R   
Sbjct: 552 GRSRSARRG-RSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPA 610

Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS 184
               SR R+ +R RSR R   +R+ +SR    R     + + RS+  ARR    S + + 
Sbjct: 611 RRGRSRSRTPARRRSRTRSPVRRRSRSRSPARR-----SGRSRSRTPARRGRSRSRTPAR 665

Query: 185 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKR-RKKKKKRKKLKKKGKEKAEAQQVEALPG 243
              S S + +  S  S S    +RG+ + +  R+ + + + L ++G+  +   Q     G
Sbjct: 666 RGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSG 725

Query: 244 PSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQS 286
            S ++ ++S          T +++SR  +   M K    +R+S
Sbjct: 726 SSSERKNKSR---------TSQRRSRSNSSPEMKKSRISSRRS 759



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 3/167 (1%)

Query: 67   RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSP-PLPLEKARGGLSGPQGGRARGAMA 125
            R+R G+         AA  ++  S ++P P+A +P  LP     G  S  +G    G+ +
Sbjct: 1595 RSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSS 1654

Query: 126  HVGSRKRS-RSRSRSRG-RGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSS 183
               S +   +SR+  RG R S + K KSR    R  S S+ +   K +  RR+RS+SSS 
Sbjct: 1655 TESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSP 1714

Query: 184  SSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGK 230
             + S +      S S SS +  +K    + +R     + K   ++G+
Sbjct: 1715 ETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGR 1761



 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 14/182 (7%)

Query: 64  GGGRARDGTW----GVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGR 119
           G  R+R   W      +  G   +   R  SR+  RP  S       + RG     + GR
Sbjct: 504 GHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNT--QRRGRSRSARRGR 561

Query: 120 ARGAMAHVGSRKRSRS---RSRSRGRGSEKRKKKSRKDTSRNCSAST----SQERSKQKA 172
           +         R RSR+   R RSR R   +R+ +SR  T R   + T     + RS+  A
Sbjct: 562 SHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPA 621

Query: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYK-DKRRKKKKKRKKLKKKGKE 231
           RRR+R+ S     S S S +  S  S S +  R+ R + +   RR + + R   ++ G+ 
Sbjct: 622 RRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRS 681

Query: 232 KA 233
           ++
Sbjct: 682 RS 683



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 76   RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGG-----LSGPQGGRA--RGAMAHVG 128
            R+  S     SR   R    P  SSP  P EK+R        S P+      RG      
Sbjct: 1708 RSASSSPETRSRTPPRHRRSPSVSSPE-PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPK 1766

Query: 129  SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
             R   RSRSRSR   +   +++ R  +S++ S    + RS+ +  RR R  S   S S +
Sbjct: 1767 PRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPA 1826

Query: 189  SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
               SS +SS       R++RG+ +     +K+ R +
Sbjct: 1827 RQESSRTSS-------RRRRGRSRTPPTSRKRSRSR 1855



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 23/225 (10%)

Query: 80  SGAALPSRPASRA-APRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
           S +  P+R  SR  +P    S    P  ++    S     R R        R RSRSR+ 
Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTP 674

Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARR--------RTRSSSSSSSSSSSSS 190
           +R  G  + +  +R+  SR+ +    + RS+   RR        + R  S SSS   + S
Sbjct: 675 ARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKS 734

Query: 191 SSSSSSSSSSSSDGRKK------RGKYKDKRRKKKKKRKKLKK--KGKEKAEAQQVEALP 242
            +S   S S+SS   KK      R +     R K K R  L++   G      Q+ +  P
Sbjct: 735 RTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPP 794

Query: 243 GPSLDQWHRSAGEEEDGPVLTDEQKSRIQAM-KPMTKEEWDARQS 286
             S     RS   +      T  ++SR  +   P  K +  +RQS
Sbjct: 795 RRS-----RSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQS 834



 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 8/163 (4%)

Query: 67   RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMA- 125
            R R G  G  ++       SR +SR   R  + +PP   +++R   S     R+R   + 
Sbjct: 1812 RRRRGGSGYHSRSPARQESSRTSSRRR-RGRSRTPPTSRKRSRSRTSPAPWKRSRSRASP 1870

Query: 126  --HVGSRKR----SRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
              H  SR R    SR RSRSR     +R+ +SR   +R  S S +   S++++R RT   
Sbjct: 1871 ATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPV 1930

Query: 180  SSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKR 222
            +   S S + ++   S S +     R+ R +     R++ + R
Sbjct: 1931 TRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR 1973



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 69/258 (26%), Positives = 95/258 (36%), Gaps = 16/258 (6%)

Query: 40  GAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKG-SGAALPSRPASRAAPRPEA 98
           G + + T  R   +R   P   S   GR+R  T   R +  S      R  SR+  R   
Sbjct: 656 GRSRSRTPARRGRSRSRTPARRS---GRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGR 712

Query: 99  SSPPLPLEKARGGLSGPQGGRARGAMAHVGSR-----KRSR-SRSRSRGRGSEKRKKKSR 152
           S    P  + R G S  +  ++R +     S      K+SR S  RSR   S + K KSR
Sbjct: 713 SHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSR 772

Query: 153 KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYK 212
               R+ S S+     KQK++   R S S SS   + S +    S SSSS   K++ K  
Sbjct: 773 LSLRRSLSGSSPCP--KQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTP 830

Query: 213 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPG-PSLDQWHRSAGEEEDGPVLTDEQKSRIQ 271
            ++           K G    +           S+    RS  E    P L     SR  
Sbjct: 831 SRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHS 890

Query: 272 ---AMKPMTKEEWDARQS 286
              +  P  K     RQS
Sbjct: 891 CSGSSPPRVKSSTPPRQS 908



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 153 KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYK 212
           +++S + S +  Q++ K+K  R  RS SSS       SS             +K R + +
Sbjct: 175 RESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKK-----------KKHRSESE 223

Query: 213 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQA 272
            K+RK +    K K+K K+K   +     P P   + HRS   +      T   +SR  A
Sbjct: 224 SKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAA 283

Query: 273 MKPMT 277
            K  T
Sbjct: 284 AKTHT 288



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)

Query: 47   GVRGCGARGPAPLLASAGGGRARDG------TWGVRTKGSGAALP-SRPASRAAP----R 95
            G  G  +R PA   +S    R R G      T   R++   +  P  R  SRA+P    R
Sbjct: 1816 GGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRR 1875

Query: 96   PEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS------RSRSRGRGSEKRKK 149
              + +P +   ++R   S     R+R   +    R RSR+      RSRSR     +R+ 
Sbjct: 1876 SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 1935

Query: 150  KSRKDTSRNCSASTSQERSKQKARRRTRS-SSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 208
            +SR  T+R  S S +   +++++R RT   +   S S +S  +   S S +S    R+ R
Sbjct: 1936 RSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSR 1995

Query: 209  GKYKDKRRKKKKKR 222
             +     R++ + R
Sbjct: 1996 SRTSPVTRRRSRSR 2009



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 57/224 (25%), Positives = 83/224 (37%), Gaps = 10/224 (4%)

Query: 79   GSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
            GS   L  +P++    R E+ S P    K R  L   Q  R+ G+   V S+ R   R R
Sbjct: 1540 GSSQELDVKPSASPQERSESDSSPDSKAKTRTPLR--QRSRS-GSSPEVDSKSRLSPR-R 1595

Query: 139  SRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSS 198
            SR   S + K K R        + +S E      R   R S S SSS     S   SSS+
Sbjct: 1596 SRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSST 1655

Query: 199  SSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEED 258
             SS +   K    +   R   + + K +   + ++     E      L +  RSA    +
Sbjct: 1656 ESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPE 1715

Query: 259  GPVLTDEQKSR---IQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
                T  +  R   + + +P  K     R+   R    P T  T
Sbjct: 1716 TRSRTPPRHRRSPSVSSPEPAEKSRSSRRR---RSASSPRTKTT 1756



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 4/129 (3%)

Query: 85  PSRPASRAA-PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRG 143
           P R A  A  P PE   P   + ++    S     + +      G R  S S  R R + 
Sbjct: 153 PQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKS 212

Query: 144 SEKRKKKSRKDTSRNCSASTSQERSKQKA--RRRTRSSSSSSSSSSSSSSSSSSSSSSSS 201
           S+K+K +S  ++ +    S +  +SK+K+  ++R RS S++ +  S  +  S+S+ S+SS
Sbjct: 213 SKKKKHRSESESKKRKHRSPTP-KSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASS 271

Query: 202 SDGRKKRGK 210
           SD  + R +
Sbjct: 272 SDTSRSRSR 280



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 6/150 (4%)

Query: 88   PASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKR 147
            P SR A R   SSP  P  K+R     P   R+  +   +  + R   RSRS     E R
Sbjct: 1663 PKSRTARRGSRSSPE-PKTKSRT----PPRRRSSRSSPELTRKARLSRRSRSASSSPETR 1717

Query: 148  KKKS-RKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRK 206
             +   R   S + S+    E+S+   RRR+ SS  + ++S    S S        S  R 
Sbjct: 1718 SRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRS 1777

Query: 207  KRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236
            +R K +  RR+ +    +   + ++++ ++
Sbjct: 1778 RREKTRTTRRRDRSGSSQSTSRRRQRSRSR 1807



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 53/218 (24%)

Query: 86  SRPASRAAPRP--------EASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS 137
           +R A + AP P        E+SS   P  K +        GR   + +    RK+S  + 
Sbjct: 157 AREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKK 216

Query: 138 RSRGRGSEKRKK---------KSRKDTSRNCSASTSQERSKQKARRRTRS-SSSSSSSSS 187
           + R     K++K         +  KD  R  S ST+     ++A R T + S+SSS +S 
Sbjct: 217 KHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSR 276

Query: 188 SSSSSSSSSS--------SSSSSDGRKKRG---------------------------KYK 212
           S S S+++ +        S S + GR+  G                            Y+
Sbjct: 277 SRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYE 336

Query: 213 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 250
           DK + KK+K         E++        P P L + H
Sbjct: 337 DKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERH 374



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 24/185 (12%)

Query: 77  TKGSGAALPSRPASRAAPRP----EASSPPLPLEKARGGLSGPQG---------GRARGA 123
           TK S  A  S  + + AP P    E SS P    ++ G     +          GR+R  
Sbjct: 428 TKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSP 487

Query: 124 MAHVGSRKRSRS---RSRSRGRGSEKRKKKSRKDTSRNCS-----ASTSQER---SKQKA 172
                 R RSR+   R  SR R  + R+ +S +   R+ S      S S +R   S+ + 
Sbjct: 488 ATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRN 547

Query: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
            +R   S S+    S S S ++   S S +  R+ R + +   R++ + R   +++ + +
Sbjct: 548 TQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSR 607

Query: 233 AEAQQ 237
             A++
Sbjct: 608 TPARR 612



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 43/178 (24%)

Query: 85   PSRPASRAAPR--------------PEASS--------PPLPLEKARGGLSGPQGGRARG 122
            P  PA RA PR              PE SS        PP      RG  S P+      
Sbjct: 1624 PKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPK---- 1679

Query: 123  AMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSS 182
                  ++ R+  R RS  R S +  +K+R       ++S+ + RS+   R R   S SS
Sbjct: 1680 ------TKSRTPPRRRS-SRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSS 1732

Query: 183  ------SSSSSSSSSSSSSSSSSSSSDGR----KKRGKYKDKRRKKKKKRKKLKKKGK 230
                  S SS    S+SS  + ++S  GR    K RG  + + R +++K +  +++ +
Sbjct: 1733 PEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDR 1790



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 11/123 (8%)

Query: 87   RPASRAAP----RPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS----- 137
            R  SR +P    R  + + P+   ++R   S     R+R +      R+RSRSR+     
Sbjct: 1981 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSR-SRTPPAIRRRSRSRTPLLPR 2039

Query: 138  -RSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSS 196
             RSR R     +++SR  T R      S  RS    RRR+ S SSS  S S++  ++ + 
Sbjct: 2040 KRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNH 2099

Query: 197  SSS 199
            S S
Sbjct: 2100 SGS 2102



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 59/254 (23%), Positives = 94/254 (37%), Gaps = 48/254 (18%)

Query: 83   ALPS--RPASRAAPRPEASSPPLPLEKARGGLSG----------PQGGRARGAMAH---- 126
            ALP   RP SR+   PE ++  L  ++ R G             P G R+R   +     
Sbjct: 1488 ALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDV 1547

Query: 127  ---VGSRKRSRS--------------RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSK 169
                  ++RS S              R RSR   S +   KSR    R+ S S+ + + K
Sbjct: 1548 KPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDK 1607

Query: 170  QKARRRTRSSSSSSSSSSSSSSSS----SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 225
             +A  R +S S SS    + +  +    S S SSS   G    G    +   +   + + 
Sbjct: 1608 PRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRT 1667

Query: 226  KKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDE----QKSRIQAMKPMTKEEW 281
             ++G   +   + ++   P      RS+      P LT +    ++SR  +  P T+   
Sbjct: 1668 ARRGSRSSPEPKTKSRTPPR----RRSS---RSSPELTRKARLSRRSRSASSSPETRSRT 1720

Query: 282  DARQSIIRKVVDPE 295
              R      V  PE
Sbjct: 1721 PPRHRRSPSVSSPE 1734



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 23/254 (9%)

Query: 56  PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASR-----AAPRPEASS--PPLPLEKA 108
           P P   S     + +        GS   + S P S+      A R ++ S  P   + ++
Sbjct: 425 PQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRS 484

Query: 109 RGGLSGPQG-GRARGAMAHVGSRKRS----RSRSRSR-GRG-SEKRKKKSRKDTSRNCSA 161
           R   +  +G  R+R       SR RS    RSRS  R GR  S +R+ +SR       S 
Sbjct: 485 RSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSR 544

Query: 162 STSQER---SKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKK 218
           S + +R   S+   R R+ S S ++   S S + +    S S +  R++       RR+ 
Sbjct: 545 SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS 604

Query: 219 KKKRKKLKKKGKEKAEAQQVEALPGP------SLDQWHRSAGEEEDGPVLTDEQKSRIQA 272
           + +    + + + +  A++      P      S     RS       P      +SR  A
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPA 664

Query: 273 MKPMTKEEWDARQS 286
            +  ++    AR+S
Sbjct: 665 RRGRSRSRTPARRS 678



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 19/194 (9%)

Query: 56   PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEA-----SSPPLPLEKARG 110
            PAP   S    R+R      R   S   L SR  SR+   P +     S   +   ++R 
Sbjct: 1858 PAPWKRS----RSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 1913

Query: 111  GLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQ 170
              S     R+R     V +R+RSRSR+ +  R S  R     +  SR+ +   ++ RS+ 
Sbjct: 1914 RASPVSRRRSRSRTPPV-TRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRS 1972

Query: 171  K----ARRRTRSSSS-----SSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 221
            +     RRR+RS +S      S S +S  +   S S +S    R+ R +     R++ + 
Sbjct: 1973 RTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRS 2032

Query: 222  RKKLKKKGKEKAEA 235
            R  L  + + ++ +
Sbjct: 2033 RTPLLPRKRSRSRS 2046



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 33/168 (19%)

Query: 67   RARDGTWGVRTKGSGAALPS---RPASRAAP----RPEASSPPLPLEKARGGLSGPQGGR 119
            R+R  T  V  + S +  P+   R  SR  P    R  + +PP+   ++R   S     R
Sbjct: 1922 RSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRR 1981

Query: 120  ARGAMAHVGSRKRSRSRS------RSRGRGSEKRKKKSRKDT------------------ 155
            +R   + V +R+RSRSR+      RSR R S   +++SR  T                  
Sbjct: 1982 SRSRTSPV-TRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRK 2040

Query: 156  -SRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 202
             SR+ S    + RS+ +  R  R   S + S  +    S+S SSS  S
Sbjct: 2041 RSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRS 2088



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 10/213 (4%)

Query: 85   PSRPASRAAPRPEASSPPLPLEKARGGLSGP-----QGGRARGAMAHVGS-RKRSRS-RS 137
            P+  +  +  R  ASSP       RG    P     Q  R+R       + R+R RS  S
Sbjct: 1735 PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSS 1794

Query: 138  RSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSS 197
            +S  R  ++ + +SR    R   +        ++   RT S      S +  +S   S S
Sbjct: 1795 QSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS 1854

Query: 198  SSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEE 257
             +S +  ++ R +      ++ + R  L  + + ++    V      S     R      
Sbjct: 1855 RTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSR 1914

Query: 258  DGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRK 290
              PV     +SR     P+T+    +R    R+
Sbjct: 1915 ASPVSRRRSRSR---TPPVTRRRSRSRTPTTRR 1944



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 63/282 (22%), Positives = 94/282 (33%), Gaps = 82/282 (29%)

Query: 41  AASADTGVRGCGARGPAPLLASAGGGRA---RDGTWGVRTKGSGAALPSRPAS------- 90
           +A+A T       R P+P     G G A     GT   +   S      +P+S       
Sbjct: 281 SAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDK 340

Query: 91  --------RAAPRPEASS----PPLP---LEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
                   R +P PE SS    PP P   L +  GG   P                    
Sbjct: 341 DKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLA------------------ 382

Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS---------- 185
                          S++  +    AS +++RS  K+  +   SSSS SS          
Sbjct: 383 -----------TTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVS 431

Query: 186 --SSSSSSS-------------SSSSSSSSSSDGRKKRGK---YKDKRRKKKKKRKKLKK 227
             +SSS  S             SSS +S + S GR KR K   +   RR  + +     K
Sbjct: 432 RHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAK 491

Query: 228 KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSR 269
           +G+ ++              QW RS   +  G   + +++ R
Sbjct: 492 RGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGR 533



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 95   RPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS------RSRGRGSEKRK 148
            R  + +PP+   ++R         R+R   + + +R+RSRSR+      RSR R S   +
Sbjct: 1945 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPI-TRRRSRSRTSPVTRRRSRSRTSPVTR 2003

Query: 149  KKSRKDTSRNCSASTSQERSKQKARRRTRSSSS-SSSSSSSSSSSSSSSSSSSSSDGRKK 207
            ++SR  TS   +   S+ R+    RRR+RS +       S S S  +    S S   R  
Sbjct: 2004 RRSRSRTS-PVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTA 2062

Query: 208  RGKYKDKRRKKKKKRKKLKKKGKEKAEA 235
            RGK    R     +R+       +++ +
Sbjct: 2063 RGKRSLTRSPPAIRRRSASGSSSDRSRS 2090



 Score = 37.7 bits (86), Expect = 0.015
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 144 SEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203
           +EK+ ++ R     + S         Q+  R  +  +       S    SSSS S +   
Sbjct: 128 NEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQ 187

Query: 204 GRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLT 263
            +KK+ K + +R +    R++ KK  K+K    + E     S  + HRS   +       
Sbjct: 188 KKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESE-----SKKRKHRSPTPKSKRK-SK 241

Query: 264 DEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
           D+++ R ++  P  K     R +        +T R+R
Sbjct: 242 DKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSR 278



 Score = 37.7 bits (86), Expect = 0.015
 Identities = 45/195 (23%), Positives = 66/195 (33%), Gaps = 33/195 (16%)

Query: 61   ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
            +S+    +   +    +   G++LP +P    A +   S  P P E  R G         
Sbjct: 2545 SSSSSSSSSSSSGSSSSDSEGSSLPVQP--EVALKRVPSPTPAPKEAVREGRPPEPTPAK 2602

Query: 121  RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQK--------- 171
            R   +   S   S S S S    S      S   +S + S+S+S   S  K         
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKP 2662

Query: 172  --------ARRRTRSSSSSSSSSSSSSSSSSS--------------SSSSSSSDGRKKRG 209
                      RR+RS      S   S S S S                 SSSS+   +RG
Sbjct: 2663 ASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRG 2722

Query: 210  KYKDKRRKKKKKRKK 224
            +  D R    K+R++
Sbjct: 2723 QRGDSRSPSHKRRRE 2737



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 17/151 (11%)

Query: 67  RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKA-----RGGLSGPQGG--- 118
           +A+  T   R++ S +  P + +   + +  +SS P P  K+     +G ++ PQ     
Sbjct: 805 KAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQS 864

Query: 119 ----RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA-- 172
               R     +      +SR+ SR    GS   + KS     ++ S S+S +  K KA  
Sbjct: 865 VTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQ-PKVKAII 923

Query: 173 --RRRTRSSSSSSSSSSSSSSSSSSSSSSSS 201
             R+R+ S SSS S S  +S ++   S S S
Sbjct: 924 SPRQRSHSGSSSPSPSRVTSRTTPRRSRSVS 954



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 87   RPASRAAP----RPEASSPPLPLEKARGG--LSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
            R  SR +P    R  + +PP    ++R    L   +  R+R  +A    R+RSRSR+   
Sbjct: 2005 RSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLA---IRRRSRSRTPRT 2061

Query: 141  GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSS 200
             RG ++   +S     R  ++ +S +RS+      TR+ S S +   + +SS  S  S  
Sbjct: 2062 ARG-KRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRP 2120

Query: 201  S 201
            S
Sbjct: 2121 S 2121



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 8/176 (4%)

Query: 76  RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGG-----RARGAMAHVGSR 130
           R+K        R  S ++P P+  S   P  ++R G S P+       R   + +    +
Sbjct: 766 RSKAKSRLSLRRSLSGSSPCPKQKSQTPP-RRSRSGSSQPKAKSRTPPRRSRSSSSPPPK 824

Query: 131 KRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSS 190
           ++S++ SR +   S     K +  T     + TS + ++Q    + RS   SS      S
Sbjct: 825 QKSKTPSR-QSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKS 883

Query: 191 SSSSSSSSSSSSDGR-KKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPS 245
            + S  S S SS  R K     +    +    + K+K     +  +    + P PS
Sbjct: 884 RTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPS 939



 Score = 32.0 bits (71), Expect = 0.82
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 77   TKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSR 136
            +  S ++  S  +S ++P P    P    + A      P   R+R     + S + SRS 
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSL 2691

Query: 137  SRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSS 196
            S S      +R++ S + + R+  +S+S+  S++  R  +RS S      + S       
Sbjct: 2692 SYS----PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRHR 2747

Query: 197  SSSS 200
            SS S
Sbjct: 2748 SSRS 2751



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 94   PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSR 152
            P    S  P P EK++  L         G+++     K S     S  G  S + K +S+
Sbjct: 1007 PSLSGSKSPCPQEKSKDSLVQS----CPGSLSLCAGVKSSTPPGESYFGVSSLQLKGQSQ 1062

Query: 153  KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKY 211
                     S+ + R         +S S +S     S SSS  +  +S S  R+ RG++
Sbjct: 1063 TSPDHRSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQDRGEF 1121



 Score = 28.9 bits (63), Expect = 6.9
 Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 28/226 (12%)

Query: 57   APLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQ 116
            A + +S   G +  G   ++ KG     P   +  ++P    S    P  +++   S P+
Sbjct: 1037 AGVKSSTPPGESYFGVSSLQLKGQSQTSPDHRSDTSSPEVRQSHSESPSLQSKSQTS-PK 1095

Query: 117  GGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRT 176
            GGR+R +        RS  R + RG  S     KS            S E+S      R 
Sbjct: 1096 GGRSRSSSPVTELASRSPIR-QDRGEFSASPMLKS----------GMSPEQS------RF 1138

Query: 177  RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236
            +S SSS  +  S+S    S   ++ S  +      +D      ++        K+K    
Sbjct: 1139 QSDSSSYPTVDSNSLLGQSRLETAESKEKMALPPQEDATASPPRQ--------KDKFSPF 1190

Query: 237  QVEALPGPSL--DQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEE 280
             V+  P  SL      R+   E  G   + E K +  A+   +++E
Sbjct: 1191 PVQDRPESSLVFKDTLRTPPRERSGAGSSPETKEQNSALPTSSQDE 1236


>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
          Length = 330

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 8/102 (7%)

Query: 129 SRKRSRS-RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           SR +SRS  SRS  R S     +SR   SR+ S+S+SQ RS+  +R R+RS  S S SSS
Sbjct: 202 SRSKSRSSHSRSSSRSSSPSSSRSRS-RSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSS 260

Query: 188 SSSSSSSS------SSSSSSSDGRKKRGKYKDKRRKKKKKRK 223
            S   SSS      SSSSSS +  +KR + +      +KKR+
Sbjct: 261 RSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 34/91 (37%), Positives = 48/91 (52%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           SR RSRSRSRS      + +  SR+ +    S S S  RS + +    + S SSSSSS  
Sbjct: 223 SRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKK 219
            +   S S SSSS D +K+R + +   R+ +
Sbjct: 283 RNRKRSRSRSSSSGDRKKRRTRSRSPERRHR 313



 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 10/144 (6%)

Query: 133 SRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS-SSSSSSS 191
           S     ++ + + + + KSR   SR+ S S+S   S+ ++R R+RSSSSS S S SSS  
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE 247

Query: 192 SSSSSSSSSSSDGRKKRGKYKDKRR-------KKKKKRKKLKKKGKEKAEAQQVEALPGP 244
            S S  S S S  R  RG    ++R         ++ RK+ + +     + ++       
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK-RRTRSR 306

Query: 245 SLDQWHR-SAGEEEDGPVLTDEQK 267
           S ++ HR S+G    G   + ++K
Sbjct: 307 SPERRHRSSSGSSHSGSRSSSKKK 330



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 90  SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRG-RGSEKRK 148
           SR++ R  + S      ++R   S     R+R +       + S+SRS SR  RGS   +
Sbjct: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270

Query: 149 KKSRKDTSRNCSASTSQERSK-----QKARRRTRSSSSSSSSSSSSSSSSSSSSSSS 200
           K+S   +S +   +  + RS+      + +RRTRS S      SSS SS S S SSS
Sbjct: 271 KRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRSSS 327



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 217
           N  AS  ++ +K+K+ RR+RS S SS S SSS SSS SSS S S    + R     + R 
Sbjct: 184 NLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRS--RSRSSSSSQSRS 241

Query: 218 KKKKRKKLKKKG-KEKAEAQQVEALPGPSLDQWHRSAGEEE 257
           +   R++ + +G K ++ ++       P    +  S+   E
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 20/142 (14%)

Query: 76  RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
           R++    +  SR +SR+      SSP     ++R         ++R       SR  SR 
Sbjct: 201 RSRSKSRSSHSRSSSRS------SSPSSSRSRSRSRSRSSSSSQSR-------SRSSSRE 247

Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS-------SSS 188
           RSRSRG  S    +  R  +S    + +S   S ++ R+R+RS SSSS         S S
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307

Query: 189 SSSSSSSSSSSSSSDGRKKRGK 210
                 SSS SS S  R    K
Sbjct: 308 PERRHRSSSGSSHSGSRSSSKK 329


>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
          Length = 320

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 8/102 (7%)

Query: 129 SRKRSRS-RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           SR +SRS  SRS  R S     +SR   SR+ S+S+SQ RS+  +R R+RS  S S SSS
Sbjct: 202 SRSKSRSSHSRSSSRSSSPSSSRSRS-RSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSS 260

Query: 188 SSSSSSSS------SSSSSSSDGRKKRGKYKDKRRKKKKKRK 223
            S   SSS      SSSSSS +  +KR + +      +KKR+
Sbjct: 261 RSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 133 SRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS-SSSSSSS 191
           S     ++ + + + + KSR   SR+ S S+S   S+ ++R R+RSSSSS S S SSS  
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE 247

Query: 192 SSSSSSSSSSSDGRKKRGKYKDKR-----------RKKKKKRKKLKKKGKEK 232
            S S  S S S  R  RG    ++           R +K+ R +    G  K
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRK 299



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA 172
           S P   R+R       SR RSRS S S+ R     +++SR   S++ S+S S   S    
Sbjct: 218 SSPSSSRSR-------SRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270

Query: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 208
           +R    S SSSSSS   +   S S SSSS D +K+R
Sbjct: 271 KR----SYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 217
           N  AS  ++ +K+K+ RR+RS S SS S SSS SSS SSS S S    + R     + R 
Sbjct: 184 NLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRS--RSRSSSSSQSRS 241

Query: 218 KKKKRKKLKKKG-KEKAEAQQVEALPGPSLDQWHRSAGEEE 257
           +   R++ + +G K ++ ++       P    +  S+   E
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 13/132 (9%)

Query: 76  RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
           R++    +  SR +SR+      SSP     ++R         ++R       SR  SR 
Sbjct: 201 RSRSKSRSSHSRSSSRS------SSPSSSRSRSRSRSRSSSSSQSR-------SRSSSRE 247

Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSS 195
           RSRSRG  S    +  R  +S    + +S   S ++ R+R+RS SSSS       + S S
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307

Query: 196 SSSSSSSDGRKK 207
             S    +  K+
Sbjct: 308 PESQVIGENTKQ 319



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 144 SEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203
           SE+     +K   R+ S S S   S+  +R  + SSS S S S S SSSSS S S SSS 
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSH-SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246

Query: 204 GRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 239
            R +    K +   +  +     +K    + +   E
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282


>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
          Length = 344

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)

Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS 184
           ++ GSR RSRSR RSR R     + +SR       S S S+ RS+ +++ R+RS S    
Sbjct: 190 SYSGSRSRSRSRRRSRSRSRRSSRSRSR-------SISKSRSRSRSRSKGRSRSRSKGRK 242

Query: 185 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK------LKKKGKEKAEAQQV 238
           S S S S   S   S S    + + +Y+  R + + +  K      +K K + +++++  
Sbjct: 243 SRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSN 302

Query: 239 EALPGP 244
             LP P
Sbjct: 303 SPLPVP 308



 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 32/90 (35%), Positives = 47/90 (52%)

Query: 145 EKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG 204
           +K +   R+  S + S S S+ RS+ ++RR +RS S S S S S S S S   S S S G
Sbjct: 181 DKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG 240

Query: 205 RKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
           RK R K K K +  +      + + K++ E
Sbjct: 241 RKSRSKSKSKPKSDRGSHSHSRSRSKDEYE 270



 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 25/165 (15%)

Query: 79  GSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
           GS +   SR  SR+  R  + S    + K+R                   SR RS+ RSR
Sbjct: 193 GSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSR-----------------SRSRSKGRSR 235

Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQERSK---QKARRRTRSSSSSSSSSSSSSSSSSS 195
           SR +G + R K   K  S   S S S+ RSK   +K+R R+RS S   +      S S S
Sbjct: 236 SRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRS 295

Query: 196 SSSSSSSD-----GRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 235
            S S S+        K R      +R   + R + + K + ++ +
Sbjct: 296 RSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSRS 340


>gi|52426743 cisplatin resistance-associated overexpressed protein
           [Homo sapiens]
          Length = 432

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)

Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
           R++ R+R R R + S  R + S + + R CS S   +RS+ + RRR+RS     S S   
Sbjct: 279 REKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDR 338

Query: 190 SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQW 249
           S              RK R + +D+RR K + RK  K + K +   Q             
Sbjct: 339 SE-------------RKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQD------------ 373

Query: 250 HRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGE 307
            +S  +E+ G   +D++KS +++     + E    +S      +   G +  IK +G+
Sbjct: 374 RKSKEKEKRG---SDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTSEDIKSEGD 428



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 67  RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
           RARD     R +   +   SR +SR + R  + S      ++R         R R + +H
Sbjct: 283 RARD-----RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRR-SRSH 336

Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQER-SKQKARRRTRSSSSSSSS 185
             S ++ RSRSR R R S+ R +KS K  S+  S    Q+R SK+K +R +    SS  S
Sbjct: 337 DRSERKHRSRSRDR-RRSKSRDRKSYKHRSK--SRDREQDRKSKEKEKRGSDDKKSSVKS 393

Query: 186 SSSSSSSSSSSSSSSSSDGRKK 207
            S    S  +++ S  SD + +
Sbjct: 394 GSREKQSEDTNTESKESDTKNE 415



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSR---------KDTSRNCSASTSQERSKQKARRRTRSS 179
           SR R R RS+SR R S K + KSR         +   R      S  +S  + ++   ++
Sbjct: 345 SRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTN 404

Query: 180 SSSSSSSSSSSSSSSSSSSSSSSD 203
           + S  S + +  + +S    S  D
Sbjct: 405 TESKESDTKNEVNGTSEDIKSEGD 428


>gi|19923485 cisplatin resistance-associated overexpressed protein
           [Homo sapiens]
          Length = 432

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)

Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
           R++ R+R R R + S  R + S + + R CS S   +RS+ + RRR+RS     S S   
Sbjct: 279 REKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDR 338

Query: 190 SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQW 249
           S              RK R + +D+RR K + RK  K + K +   Q             
Sbjct: 339 SE-------------RKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQD------------ 373

Query: 250 HRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGE 307
            +S  +E+ G   +D++KS +++     + E    +S      +   G +  IK +G+
Sbjct: 374 RKSKEKEKRG---SDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTSEDIKSEGD 428



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 67  RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
           RARD     R +   +   SR +SR + R  + S      ++R         R R + +H
Sbjct: 283 RARD-----RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRR-SRSH 336

Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQER-SKQKARRRTRSSSSSSSS 185
             S ++ RSRSR R R S+ R +KS K  S+  S    Q+R SK+K +R +    SS  S
Sbjct: 337 DRSERKHRSRSRDR-RRSKSRDRKSYKHRSK--SRDREQDRKSKEKEKRGSDDKKSSVKS 393

Query: 186 SSSSSSSSSSSSSSSSSDGRKK 207
            S    S  +++ S  SD + +
Sbjct: 394 GSREKQSEDTNTESKESDTKNE 415



 Score = 33.1 bits (74), Expect = 0.37
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSR---------KDTSRNCSASTSQERSKQKARRRTRSS 179
           SR R R RS+SR R S K + KSR         +   R      S  +S  + ++   ++
Sbjct: 345 SRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTN 404

Query: 180 SSSSSSSSSSSSSSSSSSSSSSSD 203
           + S  S + +  + +S    S  D
Sbjct: 405 TESKESDTKNEVNGTSEDIKSEGD 428


>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
          Length = 248

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
           GS+  +    +      ++ +K   K  S N S+S  +ER K++ ++  RSSSSS     
Sbjct: 54  GSKALAEFEEKMNENWKKELEKSREKLLSGNESSSKKRERKKKRKKKSCRSSSSS----- 108

Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLD 247
             SSS SSSSSS S D  KK+GK   +R+KKK +  K  +    ++E++  E++      
Sbjct: 109 --SSSDSSSSSSDSEDEEKKQGK---RRKKKKNRSYKSSQSSTHESESESKESVKKKKKS 163

Query: 248 QWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKE 279
           +      +E+D   L+ ++K      KP++ E
Sbjct: 164 K--DETEKEKDVRSLSKKRKKSYPDDKPLSSE 193



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S + S   S S  + S K+KKKS+ +T +         RS  K R+++       SS SS
Sbjct: 141 SSQSSTHESESESKESVKKKKKSKDETEKE-----KDVRSLSKKRKKSYPDDKPLSSESS 195

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
           S S       +      ++R + K+K +KKKKK+ K   K K+K
Sbjct: 196 SESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKK 239



 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 24/133 (18%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S   S S    + +G  ++KKK+R   S   S   S+  SK+  +++ +S   +      
Sbjct: 114 SSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEKDV 173

Query: 189 SSSSSS-----------SSSSSSSSD------GRKKR-------GKYKDKRRKKKKKRKK 224
            S S             SS SSS SD       +KKR        K K K++KKK+ +K 
Sbjct: 174 RSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKH 233

Query: 225 LKKKGKEKAEAQQ 237
            KKK K+   + +
Sbjct: 234 SKKKKKKSGSSHK 246


>gi|168229156 NFKB activating protein [Homo sapiens]
          Length = 415

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 25/181 (13%)

Query: 134 RSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSS 193
           +  + S     E++KKKS          S S+ERSK+  RR+ +SS       S  S S 
Sbjct: 169 KKSTTSASTSEEEKKKKS----------SRSKERSKK--RRKKKSSKRKHKKYSEDSDSD 216

Query: 194 SSSSSSSSSDGRKKRGKYKDKRRKKKKKR-KKLKKKGKEKAEAQQVEALPGPSLDQWHRS 252
           S S + SS +  K+R K   K+ KKKK R KK KKK  +K+  +  +            S
Sbjct: 217 SDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSD------------S 264

Query: 253 AGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEI 312
           + +E     L +  K R +A +P      +A +++  +   P      L+ G+G  + E 
Sbjct: 265 SSKESQEEFLENPWKDRTKAEEPSDLIGPEAPKTLTSQDDKPLNYGHALLPGEGAAMAEY 324

Query: 313 V 313
           V
Sbjct: 325 V 325



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 57/207 (27%), Positives = 86/207 (41%), Gaps = 27/207 (13%)

Query: 80  SGAALPSRPASRAAPRPEASSP-PLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
           SG+  P R AS +  R  +SS  P P + AR     P+G R+R           S S SR
Sbjct: 5   SGSRSPDREASGSGGRRRSSSKSPKPSKSARS----PRGRRSR-----------SHSCSR 49

Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSS 198
           S  R     +       SRN S      RS+ ++R R R S+      +S+SSS    S 
Sbjct: 50  SGDRNGLTHQLGGLSQGSRNQSY-----RSRSRSRSRERPSAPRGIPFASASSSVYYGSY 104

Query: 199 SSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGK-EKAEAQQVEAL----PGPSLDQWHRSA 253
           S      K      DK R++  ++K+L ++ +  +  A +V  L    P P  D+ H   
Sbjct: 105 SRPYGSDKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDE-HTPV 163

Query: 254 GEEEDGPVLTDEQKSRIQAMKPMTKEE 280
            +EE     T    S  +  K  ++ +
Sbjct: 164 EDEEPKKSTTSASTSEEEKKKKSSRSK 190



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 31/132 (23%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
           S+KR + +S      S+++ KK  +D                         S S S S +
Sbjct: 193 SKKRRKKKS------SKRKHKKYSED-------------------------SDSDSDSET 221

Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 248
            SS   +   +  +  ++K+ K++ K+ KKK+ +K  K+     ++  Q E L  P  D+
Sbjct: 222 DSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKESQEEFLENPWKDR 281

Query: 249 WHRSAGEEEDGP 260
                  +  GP
Sbjct: 282 TKAEEPSDLIGP 293


>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
          Length = 237

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 32/173 (18%)

Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
           +K S++ +    + +E  KK+  K   +  S S S  + +Q+ ++  + S   SSSSSSS
Sbjct: 42  KKGSKALAEFEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSS 101

Query: 190 SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRK-----------------KLKKKGKEK 232
           S SSSSSS S   D  KK+G    KRRKKKK R                   LKKK K K
Sbjct: 102 SDSSSSSSDSEDED--KKQG----KRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSK 155

Query: 233 AEAQQVEALPGPSLDQWHRSAGEEEDGPVLTD-----EQKSRIQAMKPMTKEE 280
              ++ + + G S  +   S    ED P+ ++     E    ++A K  + EE
Sbjct: 156 DGTEKEKDIKGLSKKRKMYS----EDKPLSSESLSESEYIEEVRAKKKKSSEE 204



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 20/132 (15%)

Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS---- 184
           S   S S    + +G  ++KKK+R   S   S S ++  SK   +++ +S   +      
Sbjct: 105 SSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDI 164

Query: 185 ----------SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK------KKKKRKKLKKK 228
                     S     SS S S S    + R K+ K  ++R K      KKKK KK  KK
Sbjct: 165 KGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSKK 224

Query: 229 GKEKAEAQQVEA 240
            K+KA +   ++
Sbjct: 225 KKKKAASSSPDS 236


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.307    0.123    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,643,614
Number of Sequences: 37866
Number of extensions: 816677
Number of successful extensions: 36349
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 1178
Number of HSP's that attempted gapping in prelim test: 12378
Number of HSP's gapped (non-prelim): 10952
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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